TileDB-Inc/TileDB-BioImaging issues and pull requests

#43 - TileDBOpenSlide context manager

Pull Request - State: closed - Opened by gsakkis almost 2 years ago

#42 - Add test for OMETiffConverter.to_tiledb() supporting fileobj source

Pull Request - State: closed - Opened by gsakkis almost 2 years ago - 2 comments

#41 - Allow adding missing image levels to an existing TileDB group

Pull Request - State: closed - Opened by gsakkis almost 2 years ago - 1 comment

#40 - Refactor ImageConverter

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#39 - Drop ImageConverter

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#38 - General 2D-5D axes support

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#37 - Declare dependency on the PyPI tifffile instead of the TileDB fork

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#36 - Hotfix PYPI publish repository tag

Pull Request - State: closed - Opened by ktsitsi about 2 years ago

#35 - Support for vendor specific format `.isyntax`

Pull Request - State: open - Opened by ktsitsi about 2 years ago - 1 comment

#34 - PYPI release preparation

Pull Request - State: closed - Opened by ktsitsi about 2 years ago - 1 comment

#33 - TileDB to OME-TIFF

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#32 - BioImaging API DOCS

Pull Request - State: closed - Opened by ktsitsi about 2 years ago - 1 comment

#31 - Refactor ImageWriter/ImageConverter.from_tiledb

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#30 - Drop ImageReader.convert_images

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#29 - Misc. converter and test updates

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#28 - NGFF-OME-ZARR roundtrip

Pull Request - State: closed - Opened by ktsitsi about 2 years ago - 1 comment

#27 - Support general axes transpositions

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#26 - Change dimension order from XYC to CYX

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#25 - Metadata tweaks

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#24 - Multi-resolution Array Group Format Specification

Pull Request - State: closed - Opened by georgeSkoumas about 2 years ago - 1 comment

#23 - OMETiffReader fix: 'levels' should be TiffPageSeries, not TiffPage instances

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#22 - Support TileDB-Cloud group member add

Pull Request - State: closed - Opened by Shelnutt2 about 2 years ago

#21 - Add missing license file

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#20 - Ingest OME-TIFF metadata

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#19 - Determine dtype dynamically

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#18 - Support multi-channel images

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#17 - README Update

Pull Request - State: closed - Opened by georgeSkoumas about 2 years ago

#16 - Job id and export statistics

Pull Request - State: closed - Opened by ktsitsi about 2 years ago

#15 - Change level_downsamples from stored attribute to computed property

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#14 - Adding and refactoring Unit tests for OME Tiff, OME Zarr, Open Slide Unit Tests

Pull Request - State: closed - Opened by ktsitsi about 2 years ago - 1 comment

#13 - Refactor tiledbimg.open_slide

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#12 - Update example notebooks and run them on CI

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#11 - Kt/add format spec

Pull Request - State: closed - Opened by kiiimia about 2 years ago

#10 - Converter refactoring

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#9 - Create README.md

Pull Request - State: closed - Opened by kiiimia about 2 years ago - 1 comment

#8 - Add mypy pre-commit hook CI step

Pull Request - State: closed - Opened by ktsitsi about 2 years ago - 1 comment

#7 - Add continuous integration for bioimaging

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#6 - Making tiledbimg locally installable

Pull Request - State: closed - Opened by ktsitsi about 2 years ago - 1 comment

#5 - Pre-commit hooks & initial CI

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#4 - Implemented OME-Zarr importer and test

Pull Request - State: closed - Opened by kiiimia about 2 years ago

#3 - OMETIFF-TileDB Conversion Test

Pull Request - State: closed - Opened by kiiimia over 2 years ago

#2 - Added documentation to codes

Pull Request - State: closed - Opened by kiiimia over 2 years ago - 1 comment

#1 - Add OMETiffConverter

Pull Request - State: closed - Opened by ihnorton over 2 years ago

GitHub / TileDB-Inc/TileDB-BioImaging issues and pull requests