Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / TheoreticalEcology/s-jSDM issues and pull requests

#149 - Unable to scale negative R squareds

Issue - State: open - Opened by 1circle about 1 month ago - 1 comment

#148 - Helpupdates2024

Pull Request - State: closed - Opened by MaximilianPi 2 months ago

#145 - Exact VP definition

Issue - State: open - Opened by florianhartig 4 months ago - 1 comment

#144 - importance

Issue - State: closed - Opened by florianhartig 4 months ago

#142 - Readme Files

Issue - State: closed - Opened by florianhartig 4 months ago

#142 - Readme Files

Issue - State: open - Opened by florianhartig 4 months ago

#141 - Failing to run models on GPU

Issue - State: open - Opened by edstowe 4 months ago

#141 - Failing to run models on GPU

Issue - State: open - Opened by edstowe 4 months ago

#140 - Installation error

Issue - State: closed - Opened by ManuelSpinola 4 months ago - 5 comments

#139 - sjSDM - memory issues of anova()

Issue - State: open - Opened by florianhartig 6 months ago - 6 comments

#138 - sjSDM on a remote server

Issue - State: open - Opened by Loic-sanchez 6 months ago - 3 comments

#137 - vp codist

Issue - State: open - Opened by MaximilianPi 7 months ago

#136 - ValueError: Expected value argument

Issue - State: open - Opened by Sarahbouclette 7 months ago - 3 comments

#135 - Random factors

Issue - State: open - Opened by fetafretka 8 months ago - 19 comments

#134 - ValueError: Expected parameter rate

Issue - State: closed - Opened by fetafretka 8 months ago - 4 comments

#132 - PyTorch not installed

Issue - State: closed - Opened by yang963469904 about 1 year ago - 13 comments

#131 - Error in sjSDM_cv

Issue - State: open - Opened by YJ781 about 1 year ago - 8 comments

#130 - Problem with installation

Issue - State: open - Opened by niming2 about 1 year ago - 1 comment

#129 - VENN diagram Anova

Issue - State: closed - Opened by agnes-duhamet about 1 year ago - 1 comment

#128 - CRAN Issue

Issue - State: open - Opened by MaximilianPi about 1 year ago

#127 - Question about bioticStruct() and generating Single Species SDMs from sjSDM

Issue - State: open - Opened by dansmi-hub about 1 year ago - 4 comments

#126 - Negative Binomial Throws an error in tuning

Issue - State: open - Opened by metagenAu about 1 year ago - 1 comment

#125 - Installation on hpc

Issue - State: closed - Opened by YJ781 about 1 year ago - 6 comments

#124 - Species-level predictors?

Issue - State: open - Opened by fbkarsdorp over 1 year ago - 4 comments

#123 - plotInternalStructure error

Issue - State: closed - Opened by agnes-duhamet over 1 year ago - 4 comments

#122 - offset

Issue - State: open - Opened by MaximilianPi over 1 year ago
Labels: enhancement

#120 - Shared contributions in ANOVA

Issue - State: open - Opened by wevertonbio over 1 year ago - 4 comments

#119 - Error : torch._C._LinAlgError

Issue - State: open - Opened by agnes-duhamet over 1 year ago - 3 comments

#118 - plotInternalStructure: there is no package called ‘ggplodt2’

Issue - State: closed - Opened by wevertonbio over 1 year ago - 1 comment

#117 - Scale of predicted results and questions about tuning

Issue - State: open - Opened by YJ781 over 1 year ago - 3 comments

#116 - Error: object 'torch' not found in the example Pichler and Hartig- 2020

Issue - State: closed - Opened by YJ781 over 1 year ago - 2 comments

#115 - Bug: plot.sjSDM doesnt work for species with whitespace

Issue - State: closed - Opened by dansmi-hub over 1 year ago - 1 comment

#114 - Easy Model Residuals

Issue - State: open - Opened by dansmi-hub over 1 year ago - 1 comment

#113 - Different R2 produced for Model and Anova

Issue - State: closed - Opened by AndrewCSlater over 1 year ago - 1 comment

#110 - generateSpatialEV improve documentation

Issue - State: closed - Opened by MaximilianPi almost 2 years ago - 1 comment

#109 - Adding spatial component reduces R2 of model

Issue - State: closed - Opened by AndrewCSlater almost 2 years ago - 3 comments

#108 - Time as "spatial" variable

Issue - State: open - Opened by Zurapiti almost 2 years ago - 14 comments
Labels: enhancement

#107 - PyTorch not loading

Issue - State: closed - Opened by AndrewCSlater almost 2 years ago - 6 comments

#106 - Co-occurrence matrix based on residual associations

Issue - State: closed - Opened by wevertonbio about 2 years ago - 1 comment

#105 - #104

Pull Request - State: closed - Opened by MaximilianPi about 2 years ago

#104 - incorrect mean evaluation metrics in short_summary from sjSDM_cv.R ?

Issue - State: closed - Opened by Cdevenish about 2 years ago - 1 comment
Labels: bug

#103 - Categorical enviornmental variables

Issue - State: closed - Opened by LuziaThea about 2 years ago - 2 comments

#102 - Cannot reference package in RStudio on Ubuntu 22.04

Issue - State: open - Opened by kjmtaylor22 over 2 years ago - 9 comments

#101 - Question: importance() x anova()

Issue - State: open - Opened by wevertonbio over 2 years ago - 4 comments
Labels: enhancement

#100 - sjsdm_cv Gpu not enabled

Issue - State: closed - Opened by CaiWang0503 over 2 years ago - 4 comments

#99 - new feature gradient plots

Issue - State: open - Opened by MaximilianPi over 2 years ago - 5 comments
Labels: enhancement

#98 - fix plot bug

Pull Request - State: closed - Opened by MaximilianPi over 2 years ago

#97 - plot bug

Issue - State: closed - Opened by MaximilianPi over 2 years ago
Labels: bug

#96 - licence

Issue - State: closed - Opened by dougwyu over 2 years ago - 2 comments

#95 - posterior probabilities

Issue - State: closed - Opened by mdayii over 2 years ago - 1 comment

#93 - Devel branch intercept argument not found

Issue - State: closed - Opened by MaximilianPi over 2 years ago - 1 comment

#92 - installation on M1 Pro Mac

Issue - State: closed - Opened by dougwyu over 2 years ago - 4 comments

#91 - CRAN 1.0.1

Issue - State: closed - Opened by MaximilianPi over 2 years ago

#90 - Rsquared()

Issue - State: closed - Opened by mtva0001 over 2 years ago - 11 comments

#89 - v1.0.1

Pull Request - State: closed - Opened by MaximilianPi over 2 years ago

#88 - error in function sjSDM.tune

Issue - State: closed - Opened by mtva0001 over 2 years ago - 3 comments
Labels: bug

#87 - Revised documentation and global variables

Pull Request - State: closed - Opened by MaximilianPi over 2 years ago

#86 - V1.0.0

Pull Request - State: closed - Opened by MaximilianPi over 2 years ago

#85 - installation / sLVM is deprecated / improved stability

Pull Request - State: closed - Opened by MaximilianPi almost 3 years ago

#84 - Improve memory efficiency of hyper-parameter sampling

Issue - State: closed - Opened by florianhartig almost 3 years ago - 4 comments
Labels: enhancement

#83 - Regularization - parameter selection

Issue - State: open - Opened by mtva0001 almost 3 years ago - 6 comments
Labels: question

#82 - Output for species-species correlation matrix

Issue - State: closed - Opened by Zinco-Li almost 3 years ago

#81 - Dependencies not found for windows

Issue - State: closed - Opened by Zinco-Li almost 3 years ago - 1 comment
Labels: bug

#80 - Arguments for call are not valid. (torch.tensordot)

Issue - State: closed - Opened by benjamindeneu almost 3 years ago - 2 comments

#79 - Error: PyTorch not installed

Issue - State: closed - Opened by lucaz88 almost 3 years ago - 2 comments
Labels: question

#78 - installation error in macOS

Issue - State: closed - Opened by dougwyu about 3 years ago - 10 comments

#77 - RuntimeError

Issue - State: closed - Opened by drhammed about 3 years ago - 4 comments

#75 - Citation update?

Issue - State: closed - Opened by florianhartig about 3 years ago - 1 comment

#74 - How to improve GPU utilisation - how to parallelise over GPUs

Issue - State: open - Opened by MaximilianPi about 3 years ago
Labels: question

#73 - Importance, R^2 and p-values for single env predictors.

Issue - State: closed - Opened by JulFrey about 3 years ago - 3 comments
Labels: enhancement

#72 - Migrating sjSDM code to AWS

Issue - State: closed - Opened by adrian-v-m over 3 years ago - 29 comments
Labels: bug, enhancement, installation help

#71 - dependency installation issue in 0.1.8 - missing madgrad

Issue - State: closed - Opened by kjmtaylor22 over 3 years ago - 4 comments
Labels: installation help

#70 - use einsum instead of tensordot

Pull Request - State: closed - Opened by MaximilianPi over 3 years ago

#69 - test can't run in 0.1.8

Issue - State: closed - Opened by CaiWang0503 over 3 years ago - 2 comments
Labels: bug

#68 - add plotsjSDMcoef

Pull Request - State: closed - Opened by CaiWang0503 over 3 years ago - 4 comments

#67 - CPU dtype="float64" error

Issue - State: closed - Opened by MaximilianPi over 3 years ago - 1 comment
Labels: bug

#66 - CPU dtype=

Issue - State: closed - Opened by MaximilianPi over 3 years ago

#65 - importance and other new features

Pull Request - State: closed - Opened by MaximilianPi over 3 years ago

#64 - Memory problems for importance() with large covariances

Issue - State: closed - Opened by florianhartig over 3 years ago - 2 comments

#63 - multiple gpu when running 'sjSDM'

Issue - State: closed - Opened by chnpenny over 3 years ago - 1 comment

#62 - install to google colab / kaggle

Issue - State: open - Opened by chnpenny over 3 years ago - 4 comments
Labels: question

#61 - linear() doesn't accept formula as object

Issue - State: closed - Opened by Cdevenish over 3 years ago - 2 comments
Labels: bug

#60 - fix: macos installation

Pull Request - State: closed - Opened by MaximilianPi over 3 years ago

#59 - :rocket: Adding bias to DNN module

Pull Request - State: closed - Opened by MaximilianPi over 3 years ago

#58 - Phylogeny

Issue - State: open - Opened by MaximilianPi almost 4 years ago - 3 comments
Labels: enhancement, future

#57 - nn.Sequential to DNN()

Issue - State: closed - Opened by MaximilianPi almost 4 years ago
Labels: enhancement, future

#56 - dropout and clean up

Pull Request - State: closed - Opened by MaximilianPi almost 4 years ago

#55 - New version:

Pull Request - State: closed - Opened by MaximilianPi almost 4 years ago

#54 - Different families

Pull Request - State: closed - Opened by MaximilianPi about 4 years ago

#53 - summary how to display the covariance/correlation matrix

Issue - State: closed - Opened by MaximilianPi about 4 years ago - 4 comments
Labels: enhancement

#52 - Regularization

Pull Request - State: closed - Opened by MaximilianPi about 4 years ago