Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / TheJacksonLaboratory/hpo-toolkit issues and pull requests

#67 - Use default `ssl` context when fetching from `https`

Pull Request - State: closed - Opened by ielis 8 months ago

#66 - Update the way we test the library

Pull Request - State: closed - Opened by ielis 8 months ago

#65 - Support providing custom stream to the logger

Pull Request - State: closed - Opened by ielis 8 months ago

#64 - Release v0.5.0

Pull Request - State: closed - Opened by ielis 9 months ago

#63 - Add definition cross-references

Pull Request - State: closed - Opened by ielis 9 months ago - 1 comment

#62 - Add `OntologyStore` API

Pull Request - State: closed - Opened by ielis 9 months ago - 1 comment

#61 - definition

Issue - State: closed - Opened by pnrobinson 9 months ago - 1 comment

#60 - Setup benchmarking of graph traversals

Pull Request - State: closed - Opened by ielis 10 months ago

#59 - Release v0.4.3

Pull Request - State: closed - Opened by ielis 10 months ago

#58 - Fix bug in `IndexedOntologyGraph.is_leaf`.

Pull Request - State: closed - Opened by ielis 10 months ago

#57 - Release v0.4.2

Pull Request - State: closed - Opened by ielis 10 months ago

#56 - Release `v0.4.1`

Pull Request - State: closed - Opened by ielis 10 months ago

#55 - Speed up the boolean ontology graph queries

Pull Request - State: closed - Opened by ielis 10 months ago

#54 - Release `v0.4.0`

Pull Request - State: closed - Opened by ielis 10 months ago

#53 - Add `IndexedOntologyGraph`

Pull Request - State: closed - Opened by ielis 10 months ago

#52 - Implement hierarchical distance term id sorting

Pull Request - State: closed - Opened by ielis 12 months ago

#51 - Implement edge distance on `OntologyGraph`.

Pull Request - State: closed - Opened by ielis 12 months ago

#50 - Update the user guide

Pull Request - State: closed - Opened by ielis 12 months ago

#49 - Release v0.3.1post1

Pull Request - State: closed - Opened by ielis 12 months ago

#48 - Enhance the documentation

Pull Request - State: closed - Opened by ielis 12 months ago

#46 - Release v0.3.1

Pull Request - State: closed - Opened by ielis about 1 year ago

#45 - Improve documentation

Pull Request - State: closed - Opened by ielis about 1 year ago

#44 - Remove simple data classes from `hpotk.annotations`

Issue - State: open - Opened by ielis about 1 year ago

#43 - Add convenience method for getting term name

Pull Request - State: closed - Opened by ielis about 1 year ago

#42 - Release 0.3.0

Pull Request - State: closed - Opened by ielis about 1 year ago

#41 - Fix `OntologyGraph` type annotations - breaking change

Pull Request - State: closed - Opened by ielis about 1 year ago

#40 - Minor fixes

Pull Request - State: closed - Opened by ielis about 1 year ago

#39 - Add `TermIdSorting`

Pull Request - State: closed - Opened by ielis about 1 year ago

#38 - Validate input parameters, improve documentation

Pull Request - State: closed - Opened by ielis over 1 year ago

#37 - Add type checks to terms, and ontology

Pull Request - State: closed - Opened by ielis over 1 year ago

#36 - Setup the documentation.

Pull Request - State: closed - Opened by ielis over 1 year ago

#34 - Release v0.2.0

Pull Request - State: closed - Opened by ielis over 1 year ago

#33 - Cache the hash of the `TermId`

Pull Request - State: closed - Opened by ielis over 1 year ago

#32 - Graph traversals fail if the query node does not exist in the graph

Pull Request - State: closed - Opened by ielis over 1 year ago

#31 - Implement observation status for annotations

Pull Request - State: closed - Opened by ielis over 1 year ago

#30 - Graph methods can work with `Identified`.

Pull Request - State: closed - Opened by ielis over 1 year ago

#28 - Improve IC calculation and graph traversals

Pull Request - State: closed - Opened by ielis over 1 year ago

#27 - The `OntologyGraph` allows testing if the node is a leaf

Pull Request - State: closed - Opened by ielis over 1 year ago

#26 - Release v0.1.5

Pull Request - State: closed - Opened by ielis over 1 year ago

#25 - Accept `Identified` and `TermId`s in `RuleValidator`

Pull Request - State: closed - Opened by ielis over 1 year ago

#24 - Update classifiers to indicate the supported Python versions

Pull Request - State: closed - Opened by ielis over 1 year ago

#23 - Test running tests on python 3.6

Pull Request - State: closed - Opened by ielis over 1 year ago

#21 - Release v0.1.4

Pull Request - State: closed - Opened by ielis over 1 year ago

#20 - Add synonyms and cross-references to `Term`, support novel HPO annotations

Pull Request - State: closed - Opened by ielis over 1 year ago

#19 - Get Term Synonyms

Issue - State: closed - Opened by bcoleman96 over 1 year ago - 2 comments

#18 - Export `validate` module.

Pull Request - State: closed - Opened by ielis over 1 year ago

#17 - Release v0.1.3

Pull Request - State: closed - Opened by ielis over 1 year ago

#16 - Add support for working with HPO annotations

Pull Request - State: closed - Opened by ielis over 1 year ago

#15 - Release v0.1.2

Pull Request - State: closed - Opened by ielis over 1 year ago

#14 - Support Python 3.6

Pull Request - State: closed - Opened by ielis over 1 year ago

#13 - Release v0.1.1

Pull Request - State: closed - Opened by ielis over 1 year ago

#12 - Improve the documentation

Pull Request - State: closed - Opened by ielis over 1 year ago

#11 - Fix conda issues

Pull Request - State: closed - Opened by ielis over 1 year ago

#10 - Parse ontology version.

Pull Request - State: closed - Opened by ielis over 1 year ago

#9 - Support validation rules

Pull Request - State: closed - Opened by ielis over 1 year ago

#8 - Remove `networkx`

Pull Request - State: closed - Opened by ielis over 1 year ago

#7 - loading hpo

Issue - State: closed - Opened by pnrobinson almost 2 years ago - 1 comment

#6 - Contribute to PyHPO

Issue - State: closed - Opened by anergictcell almost 2 years ago - 6 comments

#5 - Release v0.1.0

Pull Request - State: closed - Opened by ielis almost 2 years ago

#4 - Implement ontology graph backed by a custom CSR connectivity matrix

Pull Request - State: closed - Opened by ielis almost 2 years ago

#3 - Various enhancement

Pull Request - State: closed - Opened by ielis almost 2 years ago

#2 - Add CI

Pull Request - State: closed - Opened by ielis almost 2 years ago

#1 - Feature/conda recipe

Pull Request - State: closed - Opened by iimpulse almost 2 years ago - 2 comments