Ecosyste.ms: Issues

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GitHub / Teichlab/celltypist issues and pull requests

#45 - Genes driving the prediction

Issue - State: closed - Opened by cdiaz45 about 2 years ago - 2 comments

#44 - predictions = celltypist.annotate "ValueError:"

Issue - State: closed - Opened by DRSEI about 2 years ago - 2 comments

#43 - Can celltypist handle doublets and low quality cells?

Issue - State: closed - Opened by rgranit about 2 years ago - 2 comments

#42 - 'Naive' cell type in 'Adult_Mouse_Gut' model

Issue - State: closed - Opened by rgranit about 2 years ago - 2 comments

#41 - undetermined cells

Issue - State: closed - Opened by pranithavangala over 2 years ago - 7 comments

#40 - Guidance for using Nanostring CosMx RNA input

Issue - State: closed - Opened by markdane over 2 years ago - 2 comments

#39 - raw training dataset

Issue - State: closed - Opened by mjstrumillo over 2 years ago - 14 comments

#38 - Can we extract the performance metrics from a customized model?

Issue - State: closed - Opened by lxhuang7 over 2 years ago - 2 comments

#37 - Details to be added about the available model

Issue - State: closed - Opened by saeedfc over 2 years ago - 3 comments

#36 - Error with model download

Issue - State: closed - Opened by akk01 over 2 years ago - 6 comments

#34 - Can't run cell typist with a my own model

Issue - State: closed - Opened by anemartinezlarrinaga2898 over 2 years ago - 6 comments

#32 - How to update the model

Issue - State: closed - Opened by hxpGit512 over 2 years ago - 3 comments

#31 - CellTypist with batch correction

Issue - State: closed - Opened by LeonHafner over 2 years ago - 1 comment

#30 - Create CITATION.cff

Pull Request - State: closed - Opened by prete over 2 years ago

#29 - RAM usage by converting from sparse to dense

Issue - State: closed - Opened by chbeltz over 2 years ago - 8 comments

#28 - model download - requests not working

Issue - State: closed - Opened by wallet-maker over 2 years ago - 1 comment

#27 - Add container section to README

Pull Request - State: closed - Opened by prete over 2 years ago

#26 - Gene names VS gene IDs in precomputed models

Issue - State: closed - Opened by emdann over 2 years ago - 3 comments

#25 - Add Dockerfile

Pull Request - State: closed - Opened by prete over 2 years ago
Labels: enhancement

#24 - Predition error

Issue - State: closed - Opened by Yuxin-Cui over 2 years ago - 2 comments

#22 - error while plotting predictions: cannot find keys

Issue - State: closed - Opened by ersgupta over 2 years ago - 5 comments

#21 - T compartment without exhausted T cells?

Issue - State: closed - Opened by Zifeng-L over 2 years ago - 2 comments

#20 - Subsetting celltypist model by cell type

Issue - State: closed - Opened by MarcusLCC over 2 years ago - 1 comment

#19 - Using integrated data

Issue - State: closed - Opened by miltargid almost 3 years ago - 1 comment

#18 - Fix np.AxisError caused by binary cell type decisions

Pull Request - State: closed - Opened by chbeltz almost 3 years ago

#17 - Binary cell type decisions lead to np.AxisError in predict_labels_and_prob

Issue - State: closed - Opened by chbeltz almost 3 years ago - 6 comments

#16 - Error : sparse matrix length is ambiguous; use getnnz() or shape[0]

Issue - State: closed - Opened by aditya-sarkar441 almost 3 years ago - 4 comments

#15 - 0 features used for prediction

Issue - State: closed - Opened by bbimber almost 3 years ago - 1 comment

#14 - Celltypist showing invalid expression matrix

Issue - State: closed - Opened by aditya-sarkar441 almost 3 years ago - 7 comments

#13 - Add environment variable support

Pull Request - State: closed - Opened by ChuanXu1 almost 3 years ago

#12 - sequencing protocol requirements?

Issue - State: closed - Opened by nrosed almost 3 years ago - 2 comments

#11 - Support custom .celltypist dir?

Issue - State: closed - Opened by bbimber about 3 years ago - 2 comments

#10 - Deterministic results?

Issue - State: closed - Opened by bbimber about 3 years ago - 2 comments

#9 - Wording on message

Issue - State: closed - Opened by bbimber about 3 years ago - 1 comment

#8 - Use "python -m" to run celltypist?

Issue - State: closed - Opened by bbimber about 3 years ago - 6 comments

#7 - Filtering labels in celltypist.dotplot

Issue - State: closed - Opened by emdann about 3 years ago - 2 comments

#6 - Add `model_list` argument to download models by name

Pull Request - State: closed - Opened by prete over 3 years ago

#5 - Add a ``celltypist.download_model(force_update=True)`` API

Issue - State: closed - Opened by watiss over 3 years ago - 1 comment

#4 - Add goolge colab badges

Pull Request - State: closed - Opened by prete over 3 years ago

#2 - Failed to install with conda

Issue - State: closed - Opened by f6v over 3 years ago - 2 comments

#1 - Bioconda recipe

Issue - State: closed - Opened by mjsteinbaugh over 3 years ago - 2 comments