Tchanders/NetworkInference.jl issues and pull requests

#39 - PIDC method error and not generating any outputs [ERROR: LoadError: MethodError: no method matching setindex_shape_check(::Int64, ::Int64)]

Issue - State: open - Opened by elhaam over 1 year ago

#38 - Error when a gene is always zero-expressed

Issue - State: open - Opened by YazdanZ about 2 years ago

#37 - Question about the edge weight

Issue - State: closed - Opened by dongyuanwu over 3 years ago - 4 comments

#36 - Ensure positive PUC scores

Pull Request - State: closed - Opened by anncfs over 3 years ago - 1 comment

#35 - Feature request: select target genes to create network around

Issue - State: open - Opened by ljschumacher over 3 years ago

#34 - Add Project.toml and update required version of InformationMeasures

Pull Request - State: closed - Opened by Tchanders almost 4 years ago

#33 - Add a section about improving performance to README

Pull Request - State: closed - Opened by Tchanders almost 4 years ago

#32 - Can I run in parallel?

Issue - State: closed - Opened by BW15061999 almost 4 years ago - 1 comment

#31 - get_nodes needs broadcasting `.=` in setindex!

Issue - State: open - Opened by shf43 almost 4 years ago - 1 comment

#30 - How to get the weight matrix?

Issue - State: open - Opened by Vivianstats almost 5 years ago - 3 comments

#29 - MethodError: no method matching setindex_shape_check(::Int64, ::Int64)

Issue - State: open - Opened by ChelseaCHENX almost 5 years ago - 2 comments

#28 - signal (7): Bus error on 5000+ genes

Issue - State: open - Opened by jlaw9 about 5 years ago - 2 comments

#27 - Update for Julia 1.0

Pull Request - State: closed - Opened by Tchanders over 5 years ago

#26 - Update REQUIRE to add upper limit on Julia version

Pull Request - State: closed - Opened by Tchanders over 5 years ago

#25 - using NetworkInference error

Issue - State: closed - Opened by WenduoGu over 5 years ago - 4 comments

#24 - Fix tests

Pull Request - State: closed - Opened by Tchanders over 6 years ago

#23 - Update readme

Pull Request - State: closed - Opened by Tchanders almost 7 years ago

#22 - Empirical Bayes now removes all edges that are in the unwanted tail + w0 is a parameter

Pull Request - State: closed - Opened by ananth-pallaseni almost 7 years ago

#21 - Add option to specify null distribution form

Pull Request - State: closed - Opened by Tchanders almost 7 years ago

#20 - Fix to make_priors

Pull Request - State: closed - Opened by ananth-pallaseni almost 7 years ago

#19 - Add more empirical Bayes options

Pull Request - State: closed - Opened by Tchanders almost 7 years ago

#18 - Added read_network_file

Pull Request - State: closed - Opened by ananth-pallaseni almost 7 years ago

#17 - Added no-priors empirical_bayes function + tests

Pull Request - State: closed - Opened by ananth-pallaseni almost 7 years ago

#16 - Empirical Bayes Hooks

Pull Request - State: closed - Opened by ananth-pallaseni almost 7 years ago

#15 - Set patch coverage to false

Pull Request - State: closed - Opened by Tchanders almost 7 years ago

#14 - Default to 1-tailed test in EB

Issue - State: closed - Opened by Tchanders almost 7 years ago

#13 - Allow multiple files and weights to be specified in EB hook

Issue - State: closed - Opened by Tchanders almost 7 years ago