Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / TIO-IKIM/CellViT issues and pull requests

#81 - Averaging Strategy for bPQ

Issue - State: closed - Opened by yazeedalrubyli 29 days ago - 2 comments

#80 - Training on MoNuSeg

Issue - State: closed - Opened by Hydroxide6 about 1 month ago - 1 comment

#78 - Postprocessing memory issue

Issue - State: open - Opened by OliS1311 about 2 months ago - 3 comments

#77 - Query Regarding CellViT Weight Compatibility for PanNuke and MoNuSeg Patches

Issue - State: open - Opened by MarkonH about 2 months ago - 2 comments

#76 - can I use CellViT to process tif files without metadata?

Issue - State: open - Opened by xyz202310 2 months ago - 2 comments

#75 - Issue with VIT-SAM-H weights during inference on fold1

Issue - State: closed - Opened by CYYJL 3 months ago - 1 comment

#74 - Question regarding the batch size

Issue - State: open - Opened by won5830 3 months ago - 1 comment

#72 - IncompatibleKeys warning when replicating PanNuke experiment

Issue - State: closed - Opened by schoonhovenrichard 3 months ago - 2 comments

#71 - Data preprocessing error

Issue - State: closed - Opened by niuhulu-rui 3 months ago - 1 comment

#70 - Cannot use cucim for patch extraction with ndpi files

Issue - State: closed - Opened by OliS1311 3 months ago - 1 comment

#68 - cell_count.csv & types.csv

Issue - State: open - Opened by happywt 4 months ago - 1 comment

#66 - Data output clarification

Issue - State: closed - Opened by linatakemaru 4 months ago

#64 - Pip failed when using environment.yml

Issue - State: closed - Opened by linatakemaru 4 months ago - 4 comments

#63 - prepare_pannuke doesn't make types.csv

Issue - State: closed - Opened by donniekramer8 5 months ago - 1 comment

#62 - UMAP of CellViT

Issue - State: closed - Opened by Liruieat 5 months ago - 1 comment

#61 - pydantic validation errors

Issue - State: closed - Opened by Lxltxpku 5 months ago - 1 comment

#59 - Results of Inference

Issue - State: closed - Opened by mdsatria 5 months ago - 1 comment

#58 - Generate cell contours for the three folds of the Pannuke dataset

Issue - State: closed - Opened by CCSSMP 5 months ago - 1 comment

#57 - Dockerfile may be of use

Issue - State: closed - Opened by PingjunChen 6 months ago - 1 comment

#56 - edge_information["edge_patches"] can be None in cell_detection.py

Issue - State: open - Opened by PingjunChen 6 months ago - 1 comment

#55 - 20x Scale Bugs

Issue - State: open - Opened by KompressorSC 6 months ago - 6 comments

#54 - Cell type label

Issue - State: closed - Opened by JiawenChenn 6 months ago - 1 comment

#53 - Do you find the training unstable for ViT-S based encoders?

Issue - State: closed - Opened by swarajnanda2021 6 months ago - 2 comments

#52 - ROI Support

Issue - State: closed - Opened by KompressorSC 6 months ago - 3 comments

#51 - three-fold cross-validation

Issue - State: closed - Opened by CYYJL 6 months ago - 1 comment

#50 - Train with one nuclei type

Issue - State: closed - Opened by Vadori 7 months ago - 5 comments

#49 - Error report for cellvit_cpp_net.py

Issue - State: closed - Opened by won5830 8 months ago - 2 comments

#48 - Comparison to PLUTO paper?

Issue - State: closed - Opened by cgebbe 8 months ago - 1 comment

#47 - Issue with downsampling

Issue - State: closed - Opened by pkeller00 8 months ago - 3 comments

#46 - About nuclear localization

Issue - State: closed - Opened by CYYJL 9 months ago

#45 - cell_detection_mp looking for files that don't exist

Issue - State: closed - Opened by bendmartin 9 months ago - 1 comment

#44 - XML annotations support

Issue - State: open - Opened by thaomaidang 9 months ago

#43 - cannot location any cell

Issue - State: closed - Opened by RNA429 9 months ago - 6 comments

#42 - Distributed training in CellViT

Issue - State: closed - Opened by CYYJL 10 months ago - 1 comment

#41 - MuNoSeg data set execution code

Issue - State: closed - Opened by CYYJL 10 months ago - 6 comments

#40 - Run Inference on CPU

Issue - State: closed - Opened by mzhoufulai 11 months ago - 1 comment

#39 - Application to non-contiguous patches

Issue - State: closed - Opened by florianbuettner 11 months ago - 1 comment

#38 - Adding final logs, fixing small bugs

Pull Request - State: closed - Opened by FabianHoerst 12 months ago - 1 comment

#37 - How to get model prediction for a single pannuke image?

Issue - State: closed - Opened by neoyinzhanghan 12 months ago - 3 comments

#36 - Can't reproduce the results of your paper

Issue - State: closed - Opened by ziwei-cui about 1 year ago - 10 comments

#34 - Predicting on 40x slides using 20x model

Issue - State: open - Opened by bgginley about 1 year ago - 5 comments

#33 - I have sent an email to you, please check it.

Issue - State: closed - Opened by windygoo about 1 year ago

#32 - eval_every must equal to 1

Issue - State: closed - Opened by windygoo about 1 year ago - 1 comment

#31 - How to calculate the STD metrics shown in Table 3 of your paper?

Issue - State: closed - Opened by windygoo about 1 year ago - 4 comments

#30 - Tiled prediction does not return proper results for all tiles

Issue - State: closed - Opened by JLrumberger about 1 year ago - 25 comments

#29 - Docker Image progress

Issue - State: closed - Opened by tomvars over 1 year ago - 2 comments

#28 - CoNSeP embedding analysis code

Issue - State: open - Opened by EmanuelSoda over 1 year ago - 1 comment

#27 - The results dir is lost.

Issue - State: closed - Opened by windygoo over 1 year ago - 1 comment

#26 - How about the segmentation performance of CellViT-SAM-H with CPP-Net decoder?

Issue - State: closed - Opened by windygoo over 1 year ago - 1 comment

#25 - Question about the bPQ metric.

Issue - State: closed - Opened by windygoo over 1 year ago - 3 comments

#24 - How about the segmentation performance on other benchmarks like CoNSeP, CPM-17?

Issue - State: closed - Opened by windygooo over 1 year ago - 4 comments

#23 - How about the performance using ImageNet pre-tranied ViT?

Issue - State: closed - Opened by windygooo over 1 year ago - 1 comment

#22 - Binary weight factors?

Issue - State: closed - Opened by GlastonburyC over 1 year ago - 1 comment

#21 - Train a data set with only one tissue type

Issue - State: closed - Opened by Transformer-man over 1 year ago - 3 comments

#20 - Inference speed improved by x100 for postprocessing,But there are still serious time-consuming

Issue - State: closed - Opened by 464hee over 1 year ago - 5 comments
Labels: enhancement

#19 - Big svs Prediction

Issue - State: open - Opened by Transformer-man over 1 year ago - 7 comments
Labels: bug

#18 - Error reported in execution example

Issue - State: closed - Opened by cowrturn over 1 year ago

#17 - The official Panuke datset split?

Issue - State: closed - Opened by JackgreyL over 1 year ago - 3 comments

#16 - Training is currently broken

Issue - State: closed - Opened by FabianHoerst over 1 year ago
Labels: bug

#15 - Loss not decrease on Lizard dataset

Issue - State: closed - Opened by Lewislou over 1 year ago - 3 comments

#13 - Training and inference transformations not found

Issue - State: closed - Opened by huangzhii over 1 year ago - 2 comments

#11 - Running on multiple gpus

Issue - State: closed - Opened by Xujingkk over 1 year ago - 1 comment

#10 - Applicability to other imaging modalities

Issue - State: closed - Opened by SJayYang over 1 year ago - 3 comments

#7 - There is a problem with cell segmentation when predicting large images

Issue - State: closed - Opened by Transformer-man over 1 year ago - 14 comments

#6 - How to use on other datasets?

Issue - State: closed - Opened by clissa over 1 year ago - 9 comments

#5 - Inference speedup

Pull Request - State: closed - Opened by FabianHoerst over 1 year ago

#4 - sweep init failed for training

Issue - State: closed - Opened by randy-tsukemen over 1 year ago - 1 comment

#2 - python ./preprocessing/patch_extraction/main_extraction.py

Issue - State: closed - Opened by Transformer-man over 1 year ago - 19 comments

#1 - can use in cytopathology？

Issue - State: closed - Opened by TingsongYu over 1 year ago - 1 comment