TESTgroup-BNL/spectratrait issues and pull requests

#101 - Added NEON LMA example vignette

Pull Request - State: closed - Opened by serbinsh over 1 year ago

#100 - Replace deprecated qplot in Vignettes

Issue - State: open - Opened by serbinsh over 1 year ago
Labels: maintenance

#99 - Update vignette examples to always plot X axis as wavelength

Issue - State: open - Opened by serbinsh about 2 years ago
Labels: bug

#98 - Deprecate use of reshape2

Issue - State: open - Opened by serbinsh over 2 years ago
Labels: maintenance

#97 - Updating GH actions

Pull Request - State: closed - Opened by serbinsh over 2 years ago

#96 - Trying to fix kicking off autobuild/checks

Pull Request - State: closed - Opened by serbinsh over 2 years ago - 3 comments

#95 - Adding github actions

Pull Request - State: closed - Opened by serbinsh over 2 years ago - 1 comment

#94 - Minor updates

Pull Request - State: closed - Opened by serbinsh almost 3 years ago

#93 - Adding in functionality for using stratified sampling in pls_permutation and component selection

Pull Request - State: closed - Opened by serbinsh almost 3 years ago
Labels: enhancement

#92 - Adding group stratifying in nComps selection

Pull Request - State: closed - Opened by asierrl almost 3 years ago - 2 comments
Labels: enhancement

#91 - Small updates to run tests successfully using devtools::test()

Pull Request - State: closed - Opened by serbinsh almost 3 years ago - 1 comment

#90 - Adding group stratification to pls_permutation and selection of the number of components

Issue - State: closed - Opened by asierrl almost 3 years ago - 4 comments
Labels: enhancement

#89 - Data split fix

Pull Request - State: closed - Opened by serbinsh almost 3 years ago

#88 - baseR create_data_split tweaks

Issue - State: open - Opened by serbinsh almost 3 years ago
Labels: enhancement

#87 - Possible bug in create_data_split when working with groups

Issue - State: closed - Opened by asierrl almost 3 years ago - 10 comments
Labels: bug

#86 - nComp selection seems not to work properly

Issue - State: closed - Opened by asierrl almost 3 years ago - 7 comments

#85 - Replace old repo name in install example

Issue - State: closed - Opened by serbinsh about 3 years ago - 1 comment

#84 - another ref update

Pull Request - State: closed - Opened by regnans about 3 years ago

#83 - Updated JXB ref

Pull Request - State: closed - Opened by regnans about 3 years ago

#82 - Minor bugfix to address R2 error in the examples

Pull Request - State: closed - Opened by serbinsh over 3 years ago - 1 comment

#81 - R2 reporting bug

Issue - State: closed - Opened by serbinsh over 3 years ago - 4 comments
Labels: bug

#80 - Create new apply function that applies PLSR models to new data

Issue - State: open - Opened by serbinsh over 3 years ago - 1 comment
Labels: enhancement

#79 - Fixes addressing #78. A WIP

Pull Request - State: closed - Opened by serbinsh over 3 years ago

#78 - Fix %RMSEP in the code - should be over the range not the mean

Issue - State: closed - Opened by serbinsh over 3 years ago - 1 comment
Labels: bug

#77 - rename repo?

Issue - State: closed - Opened by serbinsh over 3 years ago - 3 comments
Labels: question

#76 - Adding figure captions

Pull Request - State: closed - Opened by serbinsh over 3 years ago

#75 - Use GitHub actions for CI

Issue - State: closed - Opened by serbinsh over 3 years ago - 4 comments
Labels: enhancement

#74 - initial cleaning up

Pull Request - State: closed - Opened by serbinsh almost 4 years ago

#73 - Update package requirements and install instructions - remove from scipts

Issue - State: closed - Opened by serbinsh almost 4 years ago - 1 comment

#72 - Package load syntax is wrong - need to fix I think

Issue - State: closed - Opened by serbinsh almost 4 years ago - 1 comment

#71 - Building a canopy example and updating DESCRIPTION

Pull Request - State: closed - Opened by serbinsh almost 4 years ago
Labels: enhancement

#70 - Update README to help new R users install and run package

Issue - State: closed - Opened by serbinsh almost 4 years ago - 2 comments
Labels: documentation

#69 - Testing from the POV of unskilled user

Issue - State: closed - Opened by regnans almost 4 years ago - 12 comments

#68 - Drop wavelengths function: For canopy examples of data with wavelengths that have poor SNR

Issue - State: open - Opened by serbinsh almost 4 years ago
Labels: enhancement

#67 - Create side by side RMSE, R2 plot function to replace hard-coded example in scripts

Issue - State: open - Opened by serbinsh almost 4 years ago
Labels: enhancement

#66 - Update f.plot.coef() to allow for selecting which quantiles to plot

Issue - State: open - Opened by serbinsh almost 4 years ago
Labels: enhancement

#65 - Add internal example script using Ely et al internal sample dataset

Issue - State: closed - Opened by serbinsh almost 4 years ago - 2 comments

#64 - Manuscript resubmission checklist

Issue - State: closed - Opened by serbinsh almost 4 years ago
Labels: documentation, enhancement, help wanted

#63 - add internal example dataset

Issue - State: closed - Opened by serbinsh almost 4 years ago - 2 comments
Labels: enhancement

#62 - Build manual

Issue - State: closed - Opened by serbinsh almost 4 years ago - 1 comment

#61 - Unit tests

Issue - State: closed - Opened by serbinsh almost 4 years ago - 3 comments
Labels: enhancement

#60 - Scales package - do we use it?

Issue - State: closed - Opened by serbinsh almost 4 years ago - 7 comments

#59 - Novel datasets for trait synthesis

Issue - State: open - Opened by serbinsh almost 4 years ago
Labels: enhancement

#58 - Canopy example?

Issue - State: closed - Opened by serbinsh almost 4 years ago - 1 comment
Labels: enhancement

#57 - Initial move to a proper R package

Pull Request - State: closed - Opened by serbinsh almost 4 years ago
Labels: enhancement

#56 - Added updated permutation analysis much more like Serbin et al 2019

Pull Request - State: closed - Opened by serbinsh almost 4 years ago - 3 comments
Labels: enhancement

#55 - Fix the sourcing of functions - GitHub making life hard again

Issue - State: closed - Opened by serbinsh almost 4 years ago - 2 comments
Labels: bug

#54 - Add new permutation analysis similar to that used in Serbin et al 2019

Issue - State: closed - Opened by serbinsh almost 4 years ago - 5 comments
Labels: enhancement

#53 - Add github_document versions of the Vignettes

Issue - State: closed - Opened by serbinsh almost 4 years ago - 1 comment
Labels: documentation, enhancement

#52 - Adding in github_documents in the vignettes

Pull Request - State: closed - Opened by serbinsh almost 4 years ago - 4 comments
Labels: documentation, enhancement

#51 - big fix and cleanup

Pull Request - State: closed - Opened by neo0351 about 4 years ago

#50 - General mop up

Pull Request - State: closed - Opened by neo0351 about 4 years ago

#49 - readme mop up

Pull Request - State: closed - Opened by neo0351 about 4 years ago

#48 - readme update

Pull Request - State: closed - Opened by neo0351 about 4 years ago

#47 - Add inVar in the parameters of the function f.coef.valid

Issue - State: closed - Opened by JulienLamour about 4 years ago - 2 comments

#46 - Correct the x axis of some plots

Issue - State: closed - Opened by JulienLamour about 4 years ago - 4 comments

#45 - Added Step and Figure numbers to output for main example

Pull Request - State: closed - Opened by serbinsh about 4 years ago

#44 - Updating script2

Pull Request - State: closed - Opened by serbinsh about 4 years ago - 4 comments

#43 - More updates - never ending

Pull Request - State: closed - Opened by serbinsh about 4 years ago

#42 - Edits suggested by Angie 9/23

Issue - State: closed - Opened by angieburnett about 4 years ago - 2 comments

#41 - Small change to preserve plot history

Pull Request - State: closed - Opened by neo0351 about 4 years ago

#40 - Updated R_Scripts

Pull Request - State: closed - Opened by serbinsh about 4 years ago - 7 comments

#39 - Implement parallel version of pls_permutation

Issue - State: open - Opened by serbinsh about 4 years ago
Labels: enhancement

#38 - Additional pre-submission updates

Pull Request - State: closed - Opened by serbinsh about 4 years ago - 6 comments

#37 - Readme edits

Pull Request - State: closed - Opened by neo0351 about 4 years ago - 4 comments
Labels: documentation

#36 - Data Cleaning edits

Pull Request - State: closed - Opened by neo0351 about 4 years ago

#35 - Check package versions

Issue - State: closed - Opened by neo0351 about 4 years ago - 5 comments
Labels: documentation

#34 - Added lowestPRESS component selection approach based on issue #28

Pull Request - State: closed - Opened by serbinsh about 4 years ago

#33 - Create v1 release

Issue - State: closed - Opened by serbinsh about 4 years ago - 1 comment

#32 - Cleanup and complete README document

Issue - State: closed - Opened by serbinsh about 4 years ago - 9 comments
Labels: documentation

#31 - Added/updated 'messy' KIT example

Pull Request - State: closed - Opened by serbinsh about 4 years ago

#30 - Split data bug bombed

Pull Request - State: closed - Opened by neo0351 about 4 years ago - 1 comment

#29 - Create a new "plsr_companion" R package to contain custom TEST group functions/approaches?

Issue - State: closed - Opened by serbinsh about 4 years ago - 1 comment

#28 - Refine model component selection

Issue - State: closed - Opened by serbinsh about 4 years ago - 30 comments
Labels: enhancement

#27 - Bug: need to generalize assumptions in base R data split

Issue - State: closed - Opened by serbinsh about 4 years ago - 10 comments

#26 - Bug: dplyr data split approach assumptions

Issue - State: closed - Opened by serbinsh about 4 years ago - 2 comments

#25 - Updated vignettes/expanded_lma_spectra-trait_plsr_example.Rmd

Pull Request - State: closed - Opened by serbinsh about 4 years ago - 4 comments

#24 - Updating vignette

Pull Request - State: closed - Opened by serbinsh about 4 years ago

#23 - Updating script to create a new single unified version - WIP

Pull Request - State: closed - Opened by serbinsh about 4 years ago

#22 - Expanded plsr jl

Pull Request - State: closed - Opened by JulienLamour about 4 years ago

#21 - Make plotting unit/variable agnostic

Issue - State: closed - Opened by serbinsh about 4 years ago - 3 comments

#20 - Expanded plsr JL

Pull Request - State: closed - Opened by JulienLamour about 4 years ago - 7 comments

#19 - Expanded plsr ja

Pull Request - State: closed - Opened by neo0351 about 4 years ago

#18 - Ecosis cannot download data

Issue - State: closed - Opened by neo0351 over 4 years ago - 4 comments

#17 - Issues Found by Ken 20200814 expanded_spectra-trait_plsr_example.R

Issue - State: closed - Opened by DavidsonKen over 4 years ago - 9 comments

#16 - Using the Jacnife method to determine NoC

Issue - State: closed - Opened by JulienLamour over 4 years ago - 5 comments

#15 - Cleanup: Confirm R script and vignette scripts match

Issue - State: closed - Opened by serbinsh over 4 years ago - 2 comments

#14 - Required: GitHub repo name/title change

Issue - State: closed - Opened by serbinsh over 4 years ago - 3 comments

#13 - Possible bugs detected by Angie #1

Issue - State: closed - Opened by serbinsh over 4 years ago