Ecosyste.ms: Issues

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GitHub / SysBioInra/RBApy issues and pull requests

#40 - Update test_cli.py

Pull Request - State: closed - Opened by obodeit almost 2 years ago

#39 - Added sample_input_small directory with B.subtilis information

Pull Request - State: closed - Opened by AnneGoelzer almost 2 years ago

#38 - Merge branch Verbose test in master

Pull Request - State: closed - Opened by AnneGoelzer almost 2 years ago

#37 - test issue

Issue - State: open - Opened by obodeit almost 2 years ago

#36 - Add Swiglpk solver

Pull Request - State: closed - Opened by AnneGoelzer about 2 years ago

#35 - Fix uniprot import

Pull Request - State: closed - Opened by AnneGoelzer about 2 years ago - 1 comment

#34 - Please add some sample files

Issue - State: open - Opened by cilamitour about 2 years ago

#33 - change indents in sbml_data.py from tabs to spaces

Pull Request - State: closed - Opened by obodeit almost 3 years ago

#32 - Add unit tests

Issue - State: open - Opened by jonrkarr about 3 years ago

#30 - Various improvements

Pull Request - State: closed - Opened by jonrkarr about 3 years ago - 1 comment

#29 - Handle exceptions more conventionally

Issue - State: closed - Opened by jonrkarr about 3 years ago

#28 - Handle warnings more conventionally

Issue - State: closed - Opened by jonrkarr about 3 years ago

#27 - Fix typos on capitalization of UniProt

Issue - State: closed - Opened by jonrkarr about 3 years ago

#26 - Add options to control verbosity

Issue - State: closed - Opened by jonrkarr about 3 years ago

#24 - Unit tests appear to be outdated

Issue - State: open - Opened by jonrkarr about 3 years ago

#23 - Add missing NumPy requirement to `setup.py`

Issue - State: closed - Opened by jonrkarr about 3 years ago

#22 - Provide inline documentation for command-line programs

Issue - State: closed - Opened by jonrkarr about 3 years ago

#21 - Add a version attribute to the `rba` module

Issue - State: closed - Opened by jonrkarr about 3 years ago

#20 - Align the version tags in GitHub and `setup.py`

Issue - State: open - Opened by jonrkarr about 3 years ago

#18 - Improve compatibility of `setup.py` with PyPI

Issue - State: closed - Opened by jonrkarr about 3 years ago

#17 - Distribute through PyPI

Issue - State: closed - Opened by jonrkarr about 3 years ago

#16 - Update requirement to recent version of SciPy

Issue - State: closed - Opened by jonrkarr about 3 years ago

#15 - Medium definition seems to be ignored

Issue - State: open - Opened by Midnighter over 3 years ago

#14 - Problems with gene product associations

Issue - State: open - Opened by Midnighter over 3 years ago

#13 - refactor: modify messages, add reaction ID

Pull Request - State: closed - Opened by Midnighter over 3 years ago

#12 - Small fixes necessary

Issue - State: open - Opened by liebermeister almost 4 years ago

#11 - Error when trying to install RBApy for python3

Issue - State: open - Opened by liebermeister almost 4 years ago - 1 comment

#10 - Error when running generate_rba_model.py on example model

Issue - State: closed - Opened by liebermeister almost 4 years ago - 4 comments

#9 - How to add proteins for new processes

Issue - State: closed - Opened by m-jahn over 4 years ago - 3 comments

#8 - parsing of enzyme subunits from SBML model does not work

Issue - State: closed - Opened by m-jahn over 4 years ago - 1 comment

#7 - functions in rba/estim seem outdated

Issue - State: open - Opened by m-jahn over 4 years ago - 3 comments

#6 - fixes 1 bug with import of SBML level 3 models, and adds tsv to write_fluxes()

Pull Request - State: closed - Opened by m-jahn over 4 years ago - 1 comment

#5 - gene names from SBML don't match uniprot because of prefix

Issue - State: closed - Opened by m-jahn over 4 years ago - 8 comments

#4 - Update setup.py

Pull Request - State: closed - Opened by AlexMart1 over 4 years ago

#3 - Indexing bug still persists

Issue - State: closed - Opened by AlexMart1 over 4 years ago - 1 comment

#2 - Instructions to install cplex discontinued in website

Issue - State: closed - Opened by AlexMart1 over 4 years ago - 2 comments

#1 - List dependencies in Readme/manual

Issue - State: open - Opened by m-jahn over 4 years ago