Ecosyste.ms: Issues

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GitHub / SyneRBI/SIRF issues and pull requests

#1192 - unused condition

Issue - State: closed - Opened by maddin200 almost 2 years ago

#1191 - unused variable

Issue - State: closed - Opened by maddin200 almost 2 years ago - 1 comment

#1189 - Expose use of different cost functions of NiftyReg's f3d

Issue - State: open - Opened by KrisThielemans almost 2 years ago
Labels: enhancement

#1188 - IterativeReconstructor needs get_objective_function method

Issue - State: closed - Opened by samdporter almost 2 years ago - 1 comment

#1186 - Resampler norm

Pull Request - State: closed - Opened by evgueni-ovtchinnikov almost 2 years ago - 2 comments

#1184 - NiftyImageData.allocate('random') should check type

Issue - State: closed - Opened by KrisThielemans almost 2 years ago - 1 comment

#1183 - Set rad traj

Pull Request - State: closed - Opened by ckolbPTB almost 2 years ago - 1 comment

#1182 - Add norm function for NiftyResampler

Issue - State: closed - Opened by Letizia97 almost 2 years ago - 1 comment

#1181 - Create a geometry attribute for ImageData

Issue - State: open - Opened by Letizia97 almost 2 years ago
Labels: SIRF/CIL integration

#1180 - removes ubuntu 20.04 from GHA

Pull Request - State: closed - Opened by paskino almost 2 years ago

#1179 - GHA: add step to use a docker image to run Gadgetron

Issue - State: closed - Opened by paskino almost 2 years ago - 1 comment

#1178 - GHA: Disable Ubuntu 20.04 builds

Issue - State: closed - Opened by paskino almost 2 years ago

#1177 - GHA: "go" failures on Ubuntu 20.04

Issue - State: closed - Opened by KrisThielemans almost 2 years ago - 2 comments

#1176 - Re-implementing Python DataContainer methods in C++

Pull Request - State: closed - Opened by evgueni-ovtchinnikov almost 2 years ago - 5 comments
Labels: enhancement, SIRF/CIL integration

#1175 - Gadgetron NUFFT producing a lot of output in stdout.

Issue - State: open - Opened by johannesmayer about 2 years ago - 3 comments

#1174 - Handling "irregular" MR acquisitions

Pull Request - State: closed - Opened by evgueni-ovtchinnikov about 2 years ago - 3 comments

#1173 - Implement comparison operators in SIRF DataContainer

Issue - State: open - Opened by paskino about 2 years ago - 3 comments

#1171 - PET example data leads to warnings

Issue - State: open - Opened by KrisThielemans about 2 years ago - 2 comments

#1170 - Integer valued sirf.ObjectiveFunction.value

Issue - State: open - Opened by Imraj-Singh about 2 years ago - 8 comments

#1168 - Sorted out various issues with PET demos

Pull Request - State: closed - Opened by evgueni-ovtchinnikov about 2 years ago - 3 comments

#1167 - minor changes to the 3.4 release notes

Pull Request - State: closed - Opened by KrisThielemans about 2 years ago

#1166 - Provide C++ tools for accessing examples data

Pull Request - State: closed - Opened by evgueni-ovtchinnikov about 2 years ago - 8 comments

#1165 - adding an extra test on the kernelise_image function

Pull Request - State: closed - Opened by danieldeidda about 2 years ago

#1164 - Syner kernel

Pull Request - State: closed - Opened by danieldeidda about 2 years ago

#1163 - expose stir::get_STIR_examples_dir() etc

Issue - State: closed - Opened by KrisThielemans about 2 years ago

#1162 - [GHA] fix gcc8 test

Pull Request - State: closed - Opened by KrisThielemans about 2 years ago - 2 comments

#1161 - Fix mrdata dimensions

Pull Request - State: closed - Opened by johannesmayer about 2 years ago - 1 comment

#1160 - AcquisitionData.dimensions() does not catch errors

Issue - State: closed - Opened by johannesmayer about 2 years ago

#1159 - Add acquisition hdr setters

Pull Request - State: closed - Opened by johannesmayer about 2 years ago - 4 comments

#1158 - Dropped TO_BE_IGNORED in MRAcquisitionData::read

Pull Request - State: closed - Opened by evgueni-ovtchinnikov about 2 years ago - 15 comments

#1157 - Wrap gadgets for better CINE reconstruction images

Pull Request - State: closed - Opened by johannesmayer about 2 years ago - 9 comments

#1156 - SIRF Reading & Writing and gadgetron_ismrmrd_client collide

Issue - State: closed - Opened by johannesmayer about 2 years ago - 5 comments

#1155 - GHA Ubuntu 22.04 broken with libunwind-dev

Issue - State: closed - Opened by KrisThielemans about 2 years ago

#1154 - Implement PinholeSPECT functionality from STIR

Pull Request - State: closed - Opened by mastergari about 2 years ago - 1 comment

#1153 - MR_TESTS_PYTHON fails on VM with SIRF 3.3.0

Issue - State: closed - Opened by evgueni-ovtchinnikov about 2 years ago - 1 comment

#1152 - Release 3.4.0 checklist

Issue - State: closed - Opened by evgueni-ovtchinnikov about 2 years ago - 1 comment

#1151 - CMake gadgetron fixes

Pull Request - State: closed - Opened by KrisThielemans about 2 years ago - 1 comment
Labels: enhancement

#1150 - coverage reports 0% coverage

Issue - State: open - Opened by KrisThielemans about 2 years ago

#1149 - replace nose with pytest

Pull Request - State: closed - Opened by KrisThielemans about 2 years ago - 9 comments

#1148 - Nose is unmaintained and no longer works with Python 3.10

Issue - State: closed - Opened by KrisThielemans about 3 years ago - 8 comments

#1147 - expose more STIR shapes

Issue - State: open - Opened by KrisThielemans about 2 years ago - 2 comments

#1146 - Change prefix from PETAcquisitionData to STIRAcquisitionData.

Pull Request - State: closed - Opened by evgueni-ovtchinnikov about 2 years ago - 4 comments

#1145 - Synthetic TOF data

Issue - State: closed - Opened by Enza-994 about 2 years ago - 1 comment

#1142 - [GHA] test with gcc 8 and 9

Pull Request - State: closed - Opened by KrisThielemans over 2 years ago - 3 comments

#1141 - Quick fix for dicom output failure #1128

Pull Request - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 1 comment

#1140 - GitHub actions are failing due to missing gcc8

Issue - State: closed - Opened by KrisThielemans over 2 years ago

#1139 - [CMake] remove use of cmake_path

Pull Request - State: closed - Opened by KrisThielemans over 2 years ago

#1137 - Trying to fix #1136

Pull Request - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 2 comments

#1135 - Update examples documentation

Pull Request - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 1 comment
Labels: enhancement

#1134 - update examples documentation

Issue - State: closed - Opened by KrisThielemans over 2 years ago

#1133 - GUI backend for matplotlib needs to be installed.

Issue - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 1 comment

#1132 - Trying to fix matplotlib backend issue

Pull Request - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 3 comments

#1131 - install fails on python files even if Python is disabled

Issue - State: closed - Opened by KrisThielemans over 2 years ago - 1 comment

#1130 - Set C++ version to 17 if using Gadgetron (#1130)

Pull Request - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 4 comments

#1129 - Cannot set compiler flag -std=gnu++14 for g++-8 on VM

Issue - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 5 comments
Labels: help wanted

#1128 - MR Dicom writer fails

Issue - State: closed - Opened by johannesmayer over 2 years ago - 7 comments

#1127 - Windows: CMake inserts extra lines in SIRF.sln

Issue - State: open - Opened by KrisThielemans over 2 years ago - 1 comment

#1126 - Change prefix from PET to STIR for DataContainer

Issue - State: closed - Opened by KrisThielemans over 2 years ago

#1125 - Trying to fix dicom output for undersampled data.

Pull Request - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 6 comments

#1122 - MRImageData.write not working for dicoms

Issue - State: closed - Opened by johannesmayer over 2 years ago

#1121 - Interface compute_kernelised_image into SIRF

Pull Request - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 6 comments
Labels: enhancement

#1117 - Improving HKEM coding from SIRF

Issue - State: closed - Opened by danieldeidda over 2 years ago - 9 comments

#1116 - Missing min attribute

Issue - State: closed - Opened by epapoutsellis over 2 years ago - 1 comment

#1115 - Typo error

Issue - State: closed - Opened by epapoutsellis over 2 years ago - 3 comments

#1112 - Release 3.3.0 checklist

Issue - State: closed - Opened by evgueni-ovtchinnikov over 2 years ago - 4 comments

#1103 - Enabling PET reconstruction from list mode data

Pull Request - State: closed - Opened by evgueni-ovtchinnikov almost 3 years ago - 24 comments

#1098 - Trajectory Setter for MRAcquisitionData

Pull Request - State: closed - Opened by johannesmayer almost 3 years ago - 4 comments

#1097 - Support setting a trajectory for spiral reconstruction

Issue - State: closed - Opened by johannesmayer almost 3 years ago

#1096 - require STIR 5.1

Issue - State: closed - Opened by KrisThielemans almost 3 years ago - 4 comments

#1090 - DICOM Image writer for MR

Issue - State: open - Opened by ckolbPTB almost 3 years ago - 8 comments

#1089 - STIR: Adding Relative Difference and LogCosh Priors and spatially varying strength (kappa) option to Quadratic

Pull Request - State: closed - Opened by Imraj-Singh almost 3 years ago - 16 comments
Labels: enhancement

#1087 - Exposing more STIR priors in SIRF

Issue - State: closed - Opened by Imraj-Singh almost 3 years ago - 2 comments

#1083 - install fails when Python not enabled/found

Issue - State: closed - Opened by KrisThielemans almost 3 years ago - 1 comment

#1082 - TOF sinogram-division leads to an error

Issue - State: closed - Opened by NicoleJurjew almost 3 years ago - 14 comments

#1065 - CoilSensitivityData.fill() sets wrong coilmaps

Issue - State: open - Opened by johannesmayer almost 3 years ago - 2 comments

#1064 - allow specifying TOF mashing for STIR

Pull Request - State: closed - Opened by KrisThielemans almost 3 years ago - 2 comments

#1056 - allow setting TOF mashing factor

Issue - State: closed - Opened by KrisThielemans almost 3 years ago
Labels: STIR, external-fix-required

#1044 - MR image data representation as NiftiImages

Issue - State: open - Opened by johannesmayer about 3 years ago - 9 comments

#1037 - libReg.a fails to link to Boost in Ubuntu 20.04

Issue - State: closed - Opened by paskino about 3 years ago - 6 comments

#1028 - Subset object in SIRF

Pull Request - State: closed - Opened by evgueni-ovtchinnikov about 3 years ago - 7 comments

#1027 - Trying to accelerate PET algebra tests for larger data

Pull Request - State: open - Opened by evgueni-ovtchinnikov about 3 years ago - 4 comments
Labels: enhancement, SIRF/CIL integration

#943 - Add reg_f3d2 support

Pull Request - State: open - Opened by ALEXJAZZ008008 over 3 years ago - 5 comments
Labels: in-progress

#919 - move examples_data_path code to C++

Issue - State: closed - Opened by KrisThielemans almost 4 years ago - 1 comment
Labels: enhancement

#904 - Find SIRF_PATH based on py install dir [ci skip]

Pull Request - State: closed - Opened by ashgillman almost 4 years ago - 5 comments

#828 - Documentation of GeometricalInfo

Issue - State: open - Opened by DANAJK about 4 years ago - 4 comments

#759 - image gradient wrt transformation

Pull Request - State: open - Opened by rijobro over 4 years ago - 2 comments

#748 - New signature for axpby in Python

Issue - State: closed - Opened by paskino over 4 years ago - 3 comments

#726 - convert a PET sinogram to nifti image

Pull Request - State: closed - Opened by rijobro over 4 years ago - 2 comments

#709 - coverage and codecov

Issue - State: closed - Opened by KrisThielemans over 4 years ago - 4 comments
Labels: enhancement

#696 - add other signature for stir.zoom_image

Issue - State: open - Opened by KrisThielemans over 4 years ago
Labels: enhancement