Ecosyste.ms: Issues

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GitHub / SyneRBI/SIRF issues and pull requests

#1291 - Prior value now returned as double

Pull Request - State: closed - Opened by evgueni-ovtchinnikov about 1 month ago - 3 comments

#1290 - Prior::get_value() is still `float`

Issue - State: closed - Opened by KrisThielemans about 1 month ago - 3 comments

#1289 - STIR.ImageData.move_to_scanner_centre is too simple

Issue - State: open - Opened by KrisThielemans about 1 month ago

#1287 - support pathlib objects for filenames in Python

Issue - State: open - Opened by KrisThielemans about 1 month ago
Labels: enhancement

#1285 - Zoom image from template method for ImageData

Pull Request - State: open - Opened by samdporter about 1 month ago

#1282 - Undefined reference to `stir::RelativeDifferencePrior`.

Issue - State: closed - Opened by evgueni-ovtchinnikov 2 months ago - 2 comments

#1280 - expose mask functions for PET scatter estimation

Pull Request - State: open - Opened by KrisThielemans 3 months ago - 1 comment
Labels: enhancement

#1279 - do not run CUDA tests if GPU not available

Pull Request - State: closed - Opened by paskino 3 months ago

#1278 - Need to disable CUDA test on GHA (also for the SuperBuild)

Issue - State: closed - Opened by KrisThielemans 3 months ago - 1 comment

#1277 - add STIR's new CudaRelativeDifferencePrior

Pull Request - State: closed - Opened by KrisThielemans 3 months ago - 1 comment
Labels: enhancement

#1276 - Fix pSTIR python tests

Pull Request - State: closed - Opened by KrisThielemans 3 months ago - 1 comment

#1275 - ctest does not run Python tests properly

Issue - State: closed - Opened by KrisThielemans 3 months ago - 2 comments
Labels: bug

#1274 - sirf.STIR.ObjectiveFunction has no numerical operations

Issue - State: open - Opened by KrisThielemans 3 months ago
Labels: enhancement

#1273 - Preparation branch for version 3.8.0

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 3 months ago - 1 comment

#1272 - SIRF 3.8.0 Release Checklist

Issue - State: open - Opened by evgueni-ovtchinnikov 3 months ago - 1 comment

#1271 - STIR min/max-scale-factor in ScatterEstimation exposed.

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 3 months ago
Labels: enhancement, request

#1270 - Expose the STIR min/max-scale-factor in ScatterEstimation.

Issue - State: closed - Opened by evgueni-ovtchinnikov 3 months ago
Labels: request

#1269 - outdated find_package(CUDA)

Issue - State: open - Opened by KrisThielemans 3 months ago

#1268 - CMake] add STIR_REGISTRIES to Reg executables

Pull Request - State: closed - Opened by KrisThielemans 4 months ago

#1267 - GitHub Actions fail on MR tests

Issue - State: closed - Opened by KrisThielemans 4 months ago - 7 comments
Labels: bug

#1266 - Continue working on moving Challenge data preparation utilities to SIRF.

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 4 months ago - 2 comments

#1265 - use more STIR container operations

Pull Request - State: closed - Opened by KrisThielemans 4 months ago
Labels: enhancement

#1263 - Revert "Moving SyneRBI-Challenge nema-data utilities to SIRF (#1241)"

Pull Request - State: closed - Opened by KrisThielemans 4 months ago - 1 comment

#1262 - Update ch2sirf with SIRF master

Pull Request - State: closed - Opened by paskino 4 months ago - 1 comment

#1259 - use STIR's sum(), find_max(), operator+= etc

Issue - State: open - Opened by KrisThielemans 4 months ago - 1 comment

#1258 - V3.7.0 prep

Pull Request - State: closed - Opened by KrisThielemans 5 months ago - 1 comment

#1257 - SIRF 3.7.0 Release Checklist

Issue - State: closed - Opened by evgueni-ovtchinnikov 5 months ago - 5 comments

#1256 - Updated data submodule

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 5 months ago

#1254 - sapyb to return even if out is not None

Pull Request - State: closed - Opened by paskino 5 months ago

#1253 - Computing Hessian products with image data objects and related stuff

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 5 months ago - 37 comments

#1251 - list-mode obj_fun.get_subset_sensitivity(0) returns None

Issue - State: closed - Opened by KrisThielemans 5 months ago - 9 comments
Labels: bug

#1249 - time frame handling in listmode reconstruction

Issue - State: closed - Opened by KrisThielemans 5 months ago - 3 comments

#1248 - cSTIR_PLSPriorGradient has confusing name

Issue - State: closed - Opened by KrisThielemans 5 months ago - 3 comments

#1247 - PET stir.ExamInfo lost in reconstruction

Issue - State: open - Opened by KrisThielemans 5 months ago

#1246 - Added optional argument out in all gradient-computing methods

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 5 months ago - 9 comments
Labels: SIRF/CIL integration

#1244 - add accumulate_Hessian_times_input to STIR objective function and prior

Issue - State: closed - Opened by KrisThielemans 5 months ago - 11 comments
Labels: enhancement

#1243 - Caching mechanism for `AcquisitionModel` norm

Issue - State: open - Opened by paskino 5 months ago - 5 comments
Labels: enhancement

#1242 - CIL algorithms with SIRF Objective and Priors

Issue - State: closed - Opened by epapoutsellis 6 months ago - 3 comments

#1241 - Moving SyneRBI-Challenge nema-data utilities to SIRF

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 6 months ago - 10 comments

#1240 - Lmrecontest2

Pull Request - State: closed - Opened by KrisThielemans 6 months ago - 1 comment

#1239 - Lmrecontest

Pull Request - State: closed - Opened by KrisThielemans 6 months ago

#1238 - examples scatter_simulation.py fails with STIR 6.0

Issue - State: closed - Opened by KrisThielemans 6 months ago
Labels: bug

#1237 - MR SIRF-exercise fails with "non-empty container" after preprocessing

Issue - State: closed - Opened by KrisThielemans 7 months ago - 13 comments
Labels: bug

#1236 - CMake improvements when coping with old Gadgetron

Pull Request - State: closed - Opened by KrisThielemans 7 months ago

#1235 - remove need for SIRF_PATH and SIRF_INSTALL_PATH env variables

Issue - State: open - Opened by KrisThielemans 7 months ago
Labels: enhancement

#1233 - Implement min() for SIRF DataContainer

Issue - State: closed - Opened by KrisThielemans 8 months ago
Labels: enhancement

#1232 - extra lines in PET example

Pull Request - State: closed - Opened by KrisThielemans 8 months ago

#1231 - Release 3.6.0 checklist

Issue - State: open - Opened by evgueni-ovtchinnikov 9 months ago - 1 comment

#1230 - fix STIR HDF5

Pull Request - State: closed - Opened by KrisThielemans 9 months ago - 1 comment

#1229 - compatibility with STIR 6.0.0

Pull Request - State: closed - Opened by KrisThielemans 9 months ago

#1228 - updates for STIR 6.0 compatibility

Pull Request - State: closed - Opened by KrisThielemans 9 months ago

#1227 - Making read-all default for reading MR acquisitions from file.

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 10 months ago - 7 comments

#1226 - Fixes a bug in NiftiImageData.cpp causing segfault

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 10 months ago - 2 comments

#1225 - NiftyResampler norm crashes on MR data with multiple repetitions

Issue - State: closed - Opened by paskino 11 months ago - 4 comments
Labels: bug

#1223 - Add set get functions for OSEM reconstructor - ScatterEstimator

Pull Request - State: closed - Opened by rmapree 11 months ago - 3 comments

#1222 - Sorted out allocate methods (CIL/SIRF compatibility)

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 11 months ago
Labels: SIRF/CIL integration

#1221 - Mask in Csm calculation leads to signal loss

Issue - State: closed - Opened by ckolbPTB 11 months ago - 6 comments

#1220 - MR AcquisitionData dimensions can be undefined

Issue - State: closed - Opened by ckolbPTB 11 months ago

#1219 - Update README.md with binary download information

Pull Request - State: closed - Opened by paskino 11 months ago

#1218 - Main README missing information on how SIRF can be installed

Issue - State: open - Opened by paskino 11 months ago - 1 comment

#1216 - remaining warning on deprecated STIR norm

Issue - State: closed - Opened by KrisThielemans 12 months ago

#1215 - Avoid using `import *` in Python MR and PET demo scripts

Pull Request - State: closed - Opened by evgueni-ovtchinnikov 12 months ago - 1 comment

#1214 - SIRF 3.5.1 Release checklist

Issue - State: closed - Opened by evgueni-ovtchinnikov 12 months ago - 1 comment

#1212 - ImageData.allocate() does not support kw None for Gadgetron.and Reg

Issue - State: closed - Opened by KrisThielemans about 1 year ago - 3 comments
Labels: bug, SIRF/CIL integration

#1211 - CIL and docker

Issue - State: open - Opened by PaulClegg about 1 year ago - 1 comment

#1210 - Safer C++ DataContainer data type handling updated

Pull Request - State: open - Opened by evgueni-ovtchinnikov about 1 year ago

#1208 - fixes STIR TOF AcquisitionData algebra

Pull Request - State: closed - Opened by KrisThielemans about 1 year ago - 6 comments

#1207 - A more flexible alternative to TO_BE_IGNORED macro

Pull Request - State: closed - Opened by evgueni-ovtchinnikov about 1 year ago - 16 comments
Labels: enhancement

#1206 - [CMAKE] default DISABLE_MATLAB to ON

Pull Request - State: closed - Opened by KrisThielemans about 1 year ago

#1204 - add OSSPS set_relaxation_gamma

Pull Request - State: closed - Opened by KrisThielemans about 1 year ago - 2 comments

#1201 - replace use of getenv(SIRF_PATH) with examples_data_path()

Issue - State: closed - Opened by KrisThielemans over 1 year ago - 1 comment

#1200 - Reading in MR data with _all=True

Issue - State: closed - Opened by ckolbPTB over 1 year ago - 13 comments
Labels: bug, design

#1199 - GHA: paths-ignore doesn't work

Issue - State: open - Opened by KrisThielemans over 1 year ago

#1198 - Release 3.5.0 checklist

Issue - State: closed - Opened by evgueni-ovtchinnikov over 1 year ago - 2 comments

#1197 - Allow STIR output file format par files with/out spaces

Pull Request - State: closed - Opened by KrisThielemans over 1 year ago

#1196 - sirf.STIR.ImageData.write_par() parameter file issue

Issue - State: closed - Opened by varzakis over 1 year ago - 2 comments

#1195 - Implemented safer C++ DataContainer data type handling, fixes #1193

Pull Request - State: closed - Opened by evgueni-ovtchinnikov over 1 year ago - 1 comment
Labels: enhancement

#1194 - Synergistic IO dependency fix

Pull Request - State: open - Opened by KrisThielemans over 1 year ago - 6 comments

#1193 - Longer term solutions to DataContainer data type issue needed.

Issue - State: open - Opened by evgueni-ovtchinnikov over 1 year ago - 2 comments

#1192 - unused condition

Issue - State: closed - Opened by maddin200 over 1 year ago

#1191 - unused variable

Issue - State: closed - Opened by maddin200 over 1 year ago - 1 comment