Synbiota/GENtle2 issues and pull requests

#255 - Create LICENSE

Pull Request - State: open - Opened by c0nn0r over 5 years ago

#254 - Take feature name from label field

Pull Request - State: closed - Opened by shramov almost 9 years ago

#253 - Jumping annotations

Issue - State: open - Opened by KeithR350 almost 9 years ago

#252 - Anchor and Cap selections wont change

Issue - State: open - Opened by KeithR350 almost 9 years ago

#251 - Spacing button doesnt work

Issue - State: open - Opened by KeithR350 almost 9 years ago

#250 - BLAST show button doesn't do anything

Issue - State: open - Opened by KeithR350 almost 9 years ago

#249 - nonEnumerableFields causes model to fail validation.

Issue - State: closed - Opened by AJamesPhillips almost 9 years ago - 2 comments
Labels: Bug

#248 - PcrProductSequence instance serialisation does not include forwardPrimer or reversePrimer

Issue - State: closed - Opened by AJamesPhillips almost 9 years ago
Labels: Bug

#247 - sequenceModel instantiation should validate stickyEnds (and sequence) if present

Issue - State: open - Opened by AJamesPhillips almost 9 years ago
Labels: Improvement

#246 - Feature/new rdp part onboarding help

Pull Request - State: closed - Opened by OkayDave almost 9 years ago

#245 - chromatograph: vertical scroll bar display issues

Issue - State: open - Opened by DesireeSy almost 9 years ago
Labels: Bug, Deathcon 1

#244 - Refactor sequence.getSubSeq so that `to` is exclusive

Issue - State: open - Opened by AJamesPhillips almost 9 years ago
Labels: Improvement

#243 - Ghost tooltip (Designer: remove single part)

Issue - State: open - Opened by DesireeSy almost 9 years ago
Labels: Bug, Deathcon 3

#242 - Feature/remove part from available list

Pull Request - State: closed - Opened by OkayDave almost 9 years ago

#241 - Feature/remove part from available list

Pull Request - State: closed - Opened by OkayDave almost 9 years ago

#240 - Designer returns wrong sticky end at the start of the sequence

Issue - State: closed - Opened by alexandremeunier almost 9 years ago
Labels: Bug

#239 - Feature/new rdp part ui

Pull Request - State: closed - Opened by OkayDave almost 9 years ago

#238 - Universal primer tag in Gentle

Issue - State: open - Opened by KeithR350 almost 9 years ago
Labels: Bug

#237 - Order features vertically in sequence canvas to display in groups

Issue - State: open - Opened by AJamesPhillips almost 9 years ago
Labels: Improvement

#236 - Add a test for `validateAssociations`

Issue - State: open - Opened by AJamesPhillips almost 9 years ago
Labels: Improvement

#235 - Allow associations to be validated quietly

Issue - State: open - Opened by AJamesPhillips almost 9 years ago
Labels: Bug

#234 - Instantiating a valid WipRdpAbstractSequence model logs an error

Issue - State: closed - Opened by AJamesPhillips almost 9 years ago
Labels: Bug

#233 - Feature/require rdp part

Pull Request - State: closed - Opened by OkayDave almost 9 years ago - 6 comments

#232 - Refactor library/rdp and plugins/pcr

Issue - State: open - Opened by AJamesPhillips almost 9 years ago
Labels: Refactor

#231 - Invalid sequence attributes stored in localStorage should not prevent GENtle from loading.

Issue - State: closed - Opened by AJamesPhillips almost 9 years ago

#230 - Feature/cds with stop

Pull Request - State: closed - Opened by AJamesPhillips almost 9 years ago

#219 - Feature/default rdp reading frame

Pull Request - State: closed - Opened by MasonEdwards almost 9 years ago

#218 - Feature/designer refactor 2 spr013 ut01 ut02

Pull Request - State: closed - Opened by OkayDave almost 9 years ago

#217 - Search NCBI: Unable to scroll search results list

Issue - State: closed - Opened by heathermmm almost 9 years ago - 1 comment
Labels: Bug, Nightly

#216 - "Could not parse the sequence" error when loading multiple files to gentle-beta

Issue - State: closed - Opened by wujpatrick almost 9 years ago - 2 comments
Labels: Bug, Beta

#214 - New RDP Circuit: Unable to make a part with an dAn-AmpR-z and z-Ori.2-dTn anchor and cap

Issue - State: closed - Opened by heathermmm almost 9 years ago - 1 comment
Labels: Bug, Nightly

#213 - Cannot copy&paste on Windows

Issue - State: closed - Opened by alexandremeunier almost 9 years ago - 1 comment
Labels: Bug

#212 - Deletion of last codon in PCR primer when converting an RDP CDS part without a stop codon

Issue - State: closed - Opened by wujpatrick almost 9 years ago - 8 comments
Labels: Bug

#210 - Encoding error for en-dashes on primer screens

Issue - State: closed - Opened by DesireeSy about 9 years ago - 3 comments
Labels: Bug

#166 - Add a PCR plugin

Issue - State: closed - Opened by alexandremeunier almost 10 years ago

#165 - Add a search plugin

Issue - State: closed - Opened by alexandremeunier almost 10 years ago
Labels: Feature, Refactor

#164 - Display feature details when hovering

Issue - State: open - Opened by alexandremeunier almost 10 years ago

#163 - Tracking mouse events in `Artist`

Issue - State: open - Opened by alexandremeunier almost 10 years ago
Labels: Feature, Refactor

#162 - When selection is made and copied through context menu the selection disappears.

Issue - State: open - Opened by ghost almost 10 years ago
Labels: Bug

#161 - When selection is made and hotkeys are used without shift key the selection disappears but the context menu remains.

Issue - State: open - Opened by ghost almost 10 years ago
Labels: Bug

#160 - When creating a new Sequence using the textarea, CPU usage jumps to 100% and the browser hangs

Issue - State: closed - Opened by alexandremeunier almost 10 years ago
Labels: Bug, URGENT!, Refactor

#159 - Tracking shapes in `Artist`

Issue - State: open - Opened by alexandremeunier almost 10 years ago - 6 comments
Labels: Feature, Refactor

#158 - Creating a feature clears the plasmid map but does not redraw it

Issue - State: open - Opened by alexandremeunier almost 10 years ago
Labels: Bug, Refactor

#157 - When a selection is made and then clicked outside sequence-canvas, the selection remains.

Issue - State: closed - Opened by ghost almost 10 years ago
Labels: Bug, Refactor

#156 - While selecting caret moves by one base for some use cases.

Issue - State: open - Opened by ghost almost 10 years ago
Labels: Bug, Refactor

#155 - GENtle3 - Closing a sequence tab opens Creates a New Sequence

Issue - State: closed - Opened by heathermmm almost 10 years ago - 6 comments
Labels: Bug, Refactor

#154 - Plasmid map title overflows for long sequence names.

Issue - State: open - Opened by ghost almost 10 years ago - 1 comment
Labels: Refactor, Optimization

#153 - Make text always be readable in plasmid map

Issue - State: closed - Opened by alexandremeunier almost 10 years ago
Labels: Refactor, Optimization

#152 - Enable Artist#text to draw text upside down, respecting alignment

Issue - State: closed - Opened by alexandremeunier almost 10 years ago
Labels: Feature, Refactor

#151 - Move secondary view dropdown to right of the status bar(under the maps).

Issue - State: closed - Opened by ghost almost 10 years ago
Labels: Refactor

#150 - Annotation edit button malfunctioning for some use cases.

Issue - State: closed - Opened by ghost almost 10 years ago
Labels: Bug, Refactor

#147 - Display features

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Feature, Refactor

#145 - Display position marks

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Feature, Refactor

#144 - Changing SequenceEditionView's SecondaryView

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Refactor, Optimization

#142 - Reposition features in available sequences when resizing (or opening sidebar)

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Bug, Refactor

#140 - Prevent available sequences' feature titles to overflow

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Refactor, Optimization

#139 - Add draggable "Entire sequence" button to designer available sequences

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Feature, Refactor

#138 - Make chunks in designed sequence trashabble

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Feature, Refactor

#137 - Make chunks in designed sequence draggable

Issue - State: closed - Opened by alexandremeunier about 10 years ago - 1 comment
Labels: Feature, Refactor

#136 - Click above the sequence in the canvas creates weird scrolling effect

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Bug, Refactor

#132 - Replace non-allowed characters by placeholder when importing Genebank

Issue - State: open - Opened by alexandremeunier about 10 years ago - 1 comment
Labels: Backlog, Refactor, Optimization

#131 - Searching NCBI sometimes wrongly detects user is entering an ID

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Bug, Refactor

#130 - Bug with selection using up arrow

Issue - State: open - Opened by alexandremeunier about 10 years ago
Labels: Bug, Refactor

#129 - Move SequenceCanvas#ContextMenu into SequenceCanvas#$scrollingChild

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Refactor, Optimization

#127 - Automatically refresh the features list in sidebar when editing the sequence

Issue - State: open - Opened by alexandremeunier about 10 years ago
Labels: Bug, Refactor

#126 - Only redraw current row when selecting in a sequence

Issue - State: open - Opened by alexandremeunier about 10 years ago
Labels: Refactor, Optimization

#125 - Ensure yOffset is updated when opening/closing the sidebar

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Bug, Refactor

#123 - Display current position in sequence above Caret

Issue - State: open - Opened by alexandremeunier about 10 years ago - 1 comment
Labels: Feature, Backlog, Refactor

#121 - Refactor ContextMenu location in sequence view

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Refactor

#114 - Editing Sequence title/description in sidebar

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Feature, Refactor

#113 - Record history related to changes in features

Issue - State: closed - Opened by alexandremeunier about 10 years ago
Labels: Feature, Refactor

#110 - Drag and drop file into the browser

Issue - State: open - Opened by alexandremeunier about 10 years ago
Labels: Backlog, Refactor

#107 - Sequence tag spacing issue

Issue - State: closed - Opened by kingjacob over 10 years ago - 2 comments

#100 - Multiple Ranges in Annotation

Issue - State: closed - Opened by algrant almost 11 years ago - 1 comment
Labels: Bug

#98 - [test] base pair count only updates when sequence is saved to synbiota, or reloaded

Issue - State: closed - Opened by bkevinchen almost 11 years ago - 1 comment
Labels: Bug

#96 - [test] Saved Date Not Updating

Issue - State: closed - Opened by bkevinchen almost 11 years ago - 1 comment
Labels: Bug

#87 - Plasmid Map Small Annotation Labels

Issue - State: closed - Opened by bkevinchen about 11 years ago - 1 comment
Labels: Bug

#85 - Navbar overlaps sequence_canvas when windowsize too small.

Issue - State: closed - Opened by algrant about 11 years ago - 1 comment

#71 - Amazon outage preparations/plans.

Issue - State: closed - Opened by c0nn0r about 12 years ago

#68 - Link to plugins.js is broken

Issue - State: closed - Opened by c0nn0r about 12 years ago - 1 comment

#63 - bugs of Synbiota web app on iOS devices

Issue - State: closed - Opened by Leukippos about 12 years ago - 3 comments

#60 - Beautify the context box

Issue - State: closed - Opened by jpahara about 12 years ago - 1 comment
Labels: feature request, Bug

#56 - Name of sequence on Browser tab

Issue - State: closed - Opened by jpahara about 12 years ago - 1 comment
Labels: feature request

#53 - Google Analytics

Issue - State: closed - Opened by c0nn0r about 12 years ago - 9 comments

#51 - Getting ready to go LIVE and Open Source

Issue - State: closed - Opened by c0nn0r about 12 years ago

#50 - Warning to Save un-saved sequences

Issue - State: closed - Opened by jpahara about 12 years ago - 1 comment
Labels: feature request, For Testers!!!!

#48 - Saving Versions of .SYBIL files rather than writing new ones (beginnig of versioning!)

Issue - State: closed - Opened by jpahara about 12 years ago - 11 comments
Labels: feature request, Bug, For Testers!!!!