SynBioHub/synbiohub issues and pull requests

#101 - Better error reporting on URI not found

Issue - State: closed - Opened by cjmyers over 7 years ago - 2 comments
Labels: bug

#100 - Add a redirect for "igem" in namespace in place of groupId

Issue - State: closed - Opened by cjmyers over 7 years ago - 2 comments
Labels: Priority

#99 - Add citation to ACS SBOL Stack paper on the website

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#98 - Add link to the bug tracker on the SynBioHub website

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#97 - Should make SBOL objects dereference to pages that describe them

Issue - State: closed - Opened by cjmyers over 7 years ago - 3 comments
Labels: enhancement

#96 - Need to fetch collection annotations

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: enhancement

#95 - Need to improve authentication procedure for remoteSubmit

Issue - State: closed - Opened by cjmyers over 7 years ago - 3 comments
Labels: Priority, security

#94 - If starts are equal, then sort by ends

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#93 - Making submissions public for large submissions does not work

Issue - State: closed - Opened by goksel over 7 years ago - 4 comments
Labels: enhancement

#92 - Find better ontology terms for the submit optional properties

Issue - State: closed - Opened by cjmyers over 7 years ago - 7 comments
Labels: Priority

#91 - Display uploadBy on views

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#90 - Add ability to Overwrite or Update a Submission

Issue - State: closed - Opened by cjmyers over 7 years ago - 4 comments
Labels: Priority, URI_Maintenance

#89 - Change Clone to Copy

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#88 - Tooltip support for Visualizations

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#87 - Discontinued rendering

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#86 - Render igem:dominant only if true

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#85 - Missing sequences drop the URI

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#84 - Swap user email for a hash in private designs

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: security

#83 - Validator no longer needs extra get request

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment

#82 - Get rid of sbolmeta

Issue - State: closed - Opened by jamesamcl over 7 years ago - 2 comments
Labels: needs testing, Priority, Refactor

#81 - Should be able to display pages stuff even if references missing entities

Issue - State: closed - Opened by jamesamcl over 7 years ago - 3 comments
Labels: bug, Priority

#80 - Update docs on sbolstack.org with new synbiohub.org URL and utah URL

Issue - State: closed - Opened by jamesamcl over 7 years ago

#79 - Search links on synbiohub.org not working correctly

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#78 - SBOL hub logo still SBOL hub and not SynBioHub

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#77 - Migrate login/submit/makePublic/clone/remove/etc to SBOLStack

Issue - State: closed - Opened by cjmyers over 7 years ago - 3 comments

#76 - Update favicon

Issue - State: closed - Opened by jamesamcl over 7 years ago

#75 - Get rid of jade

Issue - State: closed - Opened by jamesamcl over 7 years ago - 1 comment

#74 - Improve page metadata

Issue - State: closed - Opened by jamesamcl over 7 years ago - 1 comment

#73 - Data exchange with the iGEM registry

Issue - State: closed - Opened by cjmyers over 7 years ago
Labels: enhancement

#72 - Link iGEM registry SBOL Format link to SynBioHub page for part

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#70 - Need ability to allow groups to have edit on parts

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: security

#69 - Add a clone button to the manage page

Issue - State: closed - Opened by cjmyers over 7 years ago - 2 comments
Labels: Priority

#68 - Add link to LabGenius

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: enhancement

#67 - Need to visualize circular parts

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: visual

#66 - Need to carefully consider how to represent SA with Roles

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: visual

#65 - Add additional glyphs for all iGEM part / feature types

Issue - State: closed - Opened by cjmyers over 7 years ago - 10 comments
Labels: Priority

#64 - Add "download visualisation" button

Issue - State: closed - Opened by goksel over 7 years ago - 2 comments
Labels: Priority

#63 - Indenting when visualising genetic circuits

Issue - State: closed - Opened by goksel over 7 years ago - 1 comment

#62 - Label issues on viewing a component

Issue - State: closed - Opened by goksel over 7 years ago - 8 comments
Labels: Priority

#61 - Show sequence on CD page when there's only one sequence

Issue - State: closed - Opened by jamesamcl over 7 years ago - 1 comment
Labels: wontfix

#60 - Change submission id or version when making public

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#59 - Submit post request should provide URI back

Issue - State: closed - Opened by cjmyers over 7 years ago - 2 comments
Labels: enhancement

#58 - Submit should check that submission id/version is unique in the public store

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#57 - Better error messages when object not found

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#56 - Allow users to search for parts in the same way that Google allows searches

Issue - State: closed - Opened by hsauro over 7 years ago - 3 comments
Labels: enhancement

#55 - Allow users to do subsearches

Issue - State: closed - Opened by hsauro over 7 years ago - 1 comment
Labels: Priority

#54 - Remove should not remove all versions

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: bug, Priority

#53 - Add Find Uses support for all objects

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#52 - Need a GenericTopLevel view

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#51 - ModuleDefinition view should list Models

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#50 - ModuleDefinition view should show Modules/Interactions

Issue - State: closed - Opened by cjmyers over 7 years ago - 2 comments
Labels: visual

#49 - Show ModuleDefinition Roles

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#48 - Support submission of non-RDF files, such as model files

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: enhancement, Priority

#47 - Indicate MapsTos for Components/FunctionalComponents/Modules

Issue - State: closed - Opened by cjmyers over 7 years ago - 4 comments
Labels: visual

#46 - ComponentDefinition view should link to the Sequence view

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#45 - ComponentDefinition view should show sequence constraints and annotations

Issue - State: closed - Opened by cjmyers over 7 years ago - 4 comments

#44 - Add encoding to sequence view

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#43 - Annotation view

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#42 - Need a Model View

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#41 - New Sequence view

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: Priority

#40 - Need ModuleDefinition view

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment

#39 - Cycle of sequenceConstraints could cause infinite loop

Issue - State: closed - Opened by cjmyers almost 8 years ago - 2 comments
Labels: bug, Priority, visual

#38 - GenericLocations lose their attributes

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: bug, Priority

#37 - Next does not work with advanced search

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment

#36 - Bug with multiple level visBOL diagrams

Issue - State: closed - Opened by cjmyers almost 8 years ago - 2 comments
Labels: visual

#35 - getDisplayList should consider SequenceConstraints

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#34 - Need a means to edit records

Issue - State: closed - Opened by cjmyers almost 8 years ago - 3 comments
Labels: enhancement, Priority

#33 - Need a way to remove private submissions

Issue - State: closed - Opened by cjmyers almost 8 years ago - 2 comments
Labels: Priority

#32 - Perform validation on submission and report errors

Issue - State: closed - Opened by cjmyers almost 8 years ago - 2 comments
Labels: Priority

#31 - Search should be able to examine id/name/desc for ModuleDefinitions and Collections

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#30 - Search missing next and page number buttons

Issue - State: closed - Opened by cjmyers almost 8 years ago - 2 comments
Labels: Priority

#29 - Glyphs in the image should be clickable

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#28 - Revise all the URLs in app.js files

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#27 - Upload GenBank

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#26 - Need to be able to search by type and roles

Issue - State: closed - Opened by cjmyers almost 8 years ago - 3 comments
Labels: Priority

#25 - Collection page should display members better

Issue - State: closed - Opened by cjmyers almost 8 years ago - 3 comments
Labels: Priority

#24 - Add Id field to the submission form

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#23 - Change upload text

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#22 - Collection links do not work

Issue - State: closed - Opened by cjmyers almost 8 years ago - 2 comments
Labels: Priority

#21 - Add a download GenBank button

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#20 - Visualization of general component should be on the backbone

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment

#19 - URIs should resolve to SynBioHub pages

Issue - State: closed - Opened by cjmyers almost 8 years ago - 2 comments
Labels: Priority

#18 - Change URI when made public

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#17 - Upload for SBOL1 files

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#16 - Multiple collections missing newlines

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#15 - Search not working

Issue - State: closed - Opened by cjmyers almost 8 years ago - 5 comments
Labels: Priority

#14 - Sequence on Safari

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment

#13 - Problem downloading FASTA

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#12 - Problem downloading SBOL

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment
Labels: Priority

#11 - Problem clicking on collections

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment

#10 - Make URIs for iGEM parts resolvable in SynBioHub

Issue - State: closed - Opened by cjmyers almost 8 years ago - 1 comment

#9 - Can't retrieve FASTA

Issue - State: closed - Opened by jamesamcl almost 8 years ago - 1 comment

#8 - Labels overlap in visualizations

Issue - State: closed - Opened by jamesamcl almost 8 years ago - 1 comment
Labels: visual

#7 - wasDerivedFrom URI should be shown in part summary

Issue - State: closed - Opened by jamesamcl almost 8 years ago - 1 comment
Labels: Priority

#6 - Search doesn't work for small substrings

Issue - State: closed - Opened by jamesamcl almost 8 years ago - 1 comment

#5 - Implement filtering options in browse entries

Issue - State: closed - Opened by jamesamcl almost 8 years ago - 3 comments
Labels: enhancement

#4 - Forgotten password link doesn't work

Issue - State: closed - Opened by jamesamcl almost 8 years ago - 5 comments
Labels: security

GitHub / SynBioHub/synbiohub issues and pull requests