Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / SynBioDex/pySBOL2 issues and pull requests

#439 - Java Validation error when creating an interaction and adding it to a document with pySBOL2

Issue - State: closed - Opened by manulera 6 months ago - 4 comments
Labels: question

#438 - Remove functionalComponents property from Interaction

Issue - State: open - Opened by manulera 6 months ago - 2 comments
Labels: bug

#437 - Adding Interaction to ComponentDefinition

Issue - State: open - Opened by manulera 6 months ago - 1 comment
Labels: question

#436 - closes #430

Pull Request - State: open - Opened by manulera 6 months ago - 1 comment

#435 - fix style

Pull Request - State: closed - Opened by manulera 6 months ago - 1 comment

#434 - Improve style

Pull Request - State: closed - Opened by jakebeal 6 months ago

#433 - Add github action that runs unittest and linter

Issue - State: open - Opened by manulera 6 months ago - 1 comment
Labels: enhancement

#432 - update contributing with submodule test folder info

Pull Request - State: closed - Opened by manulera 6 months ago - 1 comment

#431 - closes #430

Pull Request - State: closed - Opened by manulera 6 months ago - 1 comment

#430 - Bug in ReferencedObject::__init__

Issue - State: open - Opened by manulera 6 months ago - 2 comments

#429 - Activity.endedAtTime appears to note recognize datetime objects

Issue - State: open - Opened by jakebeal 12 months ago
Labels: bug

#428 - Activity.types has wrong cardinality

Issue - State: open - Opened by jakebeal 12 months ago
Labels: bug

#427 - Use `Graph.parse` instead of `Graph.load`

Pull Request - State: closed - Opened by tcmitchell about 2 years ago

#426 - pySBOL2 unit tests are not compatible with RDFlib 6.2

Issue - State: closed - Opened by tcmitchell about 2 years ago - 1 comment

#425 - Increase python version coverage

Pull Request - State: closed - Opened by tcmitchell over 2 years ago

#424 - Update python-package.yml

Pull Request - State: closed - Opened by jakebeal over 2 years ago

#423 - Functional Components

Issue - State: closed - Opened by JMante1 over 2 years ago - 8 comments
Labels: bug

#422 - Modules

Issue - State: closed - Opened by JMante1 over 2 years ago - 2 comments

#421 - Bump version to 1.5

Pull Request - State: closed - Opened by tcmitchell over 2 years ago

#420 - Prep release 1.4.1

Pull Request - State: closed - Opened by tcmitchell over 2 years ago

#419 - Change JAVA path to update pysbol2 conda package

Issue - State: closed - Opened by kenza12 over 2 years ago

#418 - Change JAVA path to update pysbol2 conda package

Pull Request - State: closed - Opened by kenza12 over 2 years ago - 3 comments

#417 - Update pysbol2 conda package

Issue - State: closed - Opened by kenza12 over 2 years ago - 6 comments

#416 - Bump version for development

Pull Request - State: closed - Opened by jakebeal over 2 years ago

#415 - Update offline converter JAR

Pull Request - State: closed - Opened by jakebeal over 2 years ago

#414 - Offline validation conversion

Pull Request - State: closed - Opened by jakebeal over 2 years ago

#413 - Copy function doesn't remap namespaces as expected, breaks links

Issue - State: open - Opened by jakebeal over 2 years ago
Labels: bug

#412 - Combinatorial Derivations Have some issues

Issue - State: open - Opened by JMante1 almost 3 years ago - 1 comment

#411 - Solving override issue

Pull Request - State: closed - Opened by JMante1 almost 3 years ago - 3 comments

#410 - Experimental Data is owned object?

Issue - State: closed - Opened by JMante1 almost 3 years ago - 1 comment

#409 - old pysbol repo: add tag to the latest commit

Issue - State: closed - Opened by kenza12 almost 3 years ago - 10 comments

#408 - Debug messages yield TypeErrors

Issue - State: open - Opened by tcmitchell about 3 years ago - 1 comment

#407 - Bump version to 1.4

Pull Request - State: closed - Opened by tcmitchell about 3 years ago

#406 - Prevent failing build jobs from canceling other jobs

Pull Request - State: closed - Opened by tcmitchell about 3 years ago

#405 - Stop writing a temp file

Pull Request - State: closed - Opened by tcmitchell about 3 years ago

#404 - Switch to GitHub Actions

Pull Request - State: closed - Opened by tcmitchell about 3 years ago

#403 - Fix interpretation of format conversion results

Pull Request - State: closed - Opened by tcmitchell about 3 years ago

#402 - Don't create genbank2sbol.json file in working directory

Issue - State: closed - Opened by jakebeal about 3 years ago
Labels: bug

#401 - Validator errors on empty document

Issue - State: closed - Opened by jakebeal about 3 years ago - 2 comments

#400 - SBOL Output as XML

Issue - State: closed - Opened by JMante1 over 3 years ago - 6 comments

#399 - Retain referenced objects on copy

Pull Request - State: closed - Opened by tcmitchell over 3 years ago

#398 - Copy Function Changes Namespace for Sub-Component Definition

Issue - State: open - Opened by nroehner over 3 years ago - 1 comment

#397 - Copy Function Drops Definition for Sub-Component

Issue - State: closed - Opened by nroehner over 3 years ago - 1 comment

#396 - release of pySBOL2 as a conda package?

Issue - State: open - Opened by tduigou over 3 years ago - 10 comments

#395 - PythonicInterface class is missing

Issue - State: closed - Opened by tcmitchell over 3 years ago - 1 comment

#394 - PartShop.submit fails when document.displayId has no value

Issue - State: open - Opened by tramyn almost 4 years ago
Labels: bug

#393 - Request: Explain OwnedObject in docs

Issue - State: open - Opened by rpgoldman almost 4 years ago

#392 - Support PartShop.exists() in library

Issue - State: open - Opened by tramyn almost 4 years ago
Labels: enhancement

#391 - Remove Utah user/pass

Pull Request - State: closed - Opened by tcmitchell almost 4 years ago

#390 - Remove dependence on Utah SynBioHub servers

Issue - State: closed - Opened by tcmitchell almost 4 years ago

#389 - Bump version to 1.3

Pull Request - State: closed - Opened by tcmitchell almost 4 years ago

#388 - Add variable component unit testing

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#387 - Fix variable component

Pull Request - State: closed - Opened by HM00 about 4 years ago - 1 comment

#386 - Typo in default repeat value of VariableComponent class constructor

Issue - State: closed - Opened by ImperialiGEM2020 about 4 years ago - 1 comment

#385 - VariableComponent objects not created

Issue - State: closed - Opened by ImperialiGEM2020 about 4 years ago - 2 comments

#384 - Adding components to collections

Issue - State: closed - Opened by IsabelMarleen about 4 years ago - 4 comments

#383 - Sequence Ontology resolution

Issue - State: closed - Opened by dr3y about 4 years ago - 3 comments

#382 - Milliseconds are dropped from dateTime

Issue - State: open - Opened by tcmitchell about 4 years ago - 1 comment

#381 - Data types are not being written on serialization

Issue - State: open - Opened by tcmitchell about 4 years ago - 4 comments

#380 - creating an SBOL design with backwards parts

Issue - State: closed - Opened by dr3y about 4 years ago - 6 comments

#379 - Bump version to 1.2

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#378 - Composite Part Assembly with no defined assembly method

Issue - State: closed - Opened by IsabelMarleen about 4 years ago - 19 comments

#377 - Implement downloadAttachment

Pull Request - State: closed - Opened by bbartley about 4 years ago

#376 - Update to latest SBOLTestSuite

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#375 - Add a better recursive comparison test

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#374 - Add Document.importFromFormat

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#373 - Control how Document.append merges and/or overwrites

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#372 - PartShop.pullCollection

Issue - State: closed - Opened by JoshuaUrrutia about 4 years ago - 4 comments

#371 - Make Document.readString() clear the Document

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#370 - Add part shop login example

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#369 - Update extensions documentation

Pull Request - State: closed - Opened by bbartley about 4 years ago - 1 comment

#368 - Extension ownership relationships are not restored properly

Issue - State: open - Opened by tcmitchell about 4 years ago - 2 comments

#367 - Mark Config.register_extension_class as a @staticmethod

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#366 - Clear out the document in append

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#365 - Travis build improvements

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#364 - Implement PartShop.downloadAttachment

Issue - State: closed - Opened by JoshuaUrrutia about 4 years ago - 3 comments

#363 - Add login example to docs

Issue - State: closed - Opened by JoshuaUrrutia about 4 years ago

#362 - Merging of Documents with `append` is broken

Issue - State: closed - Opened by bbartley about 4 years ago - 1 comment

#361 - Bump version to 1.1

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#360 - Allow use of Raptor

Issue - State: open - Opened by jakebeal about 4 years ago

#359 - Write unit test for `append`

Issue - State: closed - Opened by bbartley about 4 years ago - 1 comment

#358 - Round-trip is not idempotent

Issue - State: closed - Opened by bbartley about 4 years ago - 4 comments

#357 - Document how to use PyPy with pySBOL2

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#356 - Improve installation instructions

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#355 - Allow math.inf for property upper bound

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#354 - Properties do not accept math.inf as an upper bound

Issue - State: closed - Opened by tcmitchell about 4 years ago

#353 - 350 register ownership predicates

Pull Request - State: closed - Opened by bbartley about 4 years ago - 1 comment

#352 - Fix SBOLError calling order

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#351 - Add docs for SBOL extensions

Pull Request - State: closed - Opened by bbartley about 4 years ago

#350 - Parent-child extensions are not serialized properly

Issue - State: closed - Opened by bbartley about 4 years ago - 1 comment

#349 - Migrate more to synbiohub.org for testing

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#348 - Bump version to 1.0

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#347 - Allow integer bounds on properties

Pull Request - State: closed - Opened by tcmitchell about 4 years ago

#345 - Error in OwnedObject.set: object is not iterable

Issue - State: closed - Opened by bbartley about 4 years ago - 2 comments

#338 - 320 register extension class

Pull Request - State: closed - Opened by bbartley about 4 years ago

#329 - Implement Document.importFromFormat

Issue - State: closed - Opened by tcmitchell over 4 years ago

#310 - Implement Analysis, Build, Design

Issue - State: open - Opened by tcmitchell over 4 years ago

#279 - Investigate using PyPy

Issue - State: closed - Opened by tcmitchell over 4 years ago - 2 comments