SynBioDex/libSBOL issues and pull requests

#223 - Bump junit from 3.8.1 to 4.13.1 in /tutorial

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#222 - _libsol not found python 3.8.3 Windows 10

Issue - State: open - Opened by ms03831 over 4 years ago

#221 - Fix certificate errors

Pull Request - State: closed - Opened by bbartley almost 5 years ago

#220 - Annotations

Pull Request - State: closed - Opened by bbartley almost 5 years ago

#219 - Partshop submit monkey patch

Pull Request - State: closed - Opened by bbartley about 5 years ago

#218 - Revert "Partshop submit monkey patch"

Pull Request - State: closed - Opened by bbartley about 5 years ago

#217 - Partshop submit monkey patch

Pull Request - State: closed - Opened by bbartley about 5 years ago

#216 - Add insertion to pySBOL

Pull Request - State: closed - Opened by tcmitchell about 5 years ago

#215 - Missing measurement.h

Issue - State: closed - Opened by igas over 5 years ago - 1 comment

#214 - Develop

Pull Request - State: closed - Opened by bbartley over 5 years ago

#213 - .NET Standard support

Issue - State: open - Opened by hez2010 almost 6 years ago

#212 - Validate resource URLs

Issue - State: closed - Opened by bbartley almost 6 years ago - 1 comment

#211 - Develop

Pull Request - State: closed - Opened by bbartley about 6 years ago

#210 - Implement PartShop::createCollection and PartShop::addToCollection for parity with libSBOLj

Issue - State: open - Opened by bbartley about 6 years ago

#209 - TopLevel.copy method segfaults if the object does not already belong to a Document

Issue - State: closed - Opened by bbartley about 6 years ago

#208 - Support the 'in' idiom for Python

Issue - State: closed - Opened by bbartley about 6 years ago - 1 comment

#207 - Optimizeread

Pull Request - State: closed - Opened by dsumorok-raytheon about 6 years ago

#206 - Optimizeread

Pull Request - State: closed - Opened by dsumorok-raytheon over 6 years ago

#205 - Provide option for non-recursive fetch from SynBioHub

Issue - State: closed - Opened by bbartley over 6 years ago - 1 comment

#204 - Implementation::built property is wrong type of property

Issue - State: open - Opened by bbartley over 6 years ago

#203 - pysbol: Segmentation fault after PartShop pull on Linux

Issue - State: open - Opened by tim-tx over 6 years ago

#202 - SSL issue with pip pysbol package on Linux

Issue - State: open - Opened by tim-tx over 6 years ago - 7 comments

#201 - Version argument of Identified.copy doesn't get added to identity URI

Issue - State: closed - Opened by nroehner over 6 years ago

#200 - Copying objects results in circular wasDerivedFrom

Issue - State: closed - Opened by bbartley over 6 years ago

#199 - Improve OwnedObject::clear methods

Issue - State: closed - Opened by bbartley over 6 years ago
Labels: Bug

#198 - Document that Extension Classes need to define a default constructor

Issue - State: open - Opened by bbartley over 6 years ago
Labels: Documentation

#197 - Re-enable roundtrip tests on travis

Issue - State: open - Opened by kirichoi over 6 years ago
Labels: Bug

#196 - Support remove methods for SynBioHub Collection and Parts

Issue - State: open - Opened by tramyn almost 7 years ago

#195 - pySBOL - New Roles/Types Cannot Be Appended to a ComponentDefinition

Issue - State: closed - Opened by nroehner almost 7 years ago - 3 comments
Labels: Bug

#194 - pySBOL - Reading Document with Custom Nested Object Causes Kernel Death

Issue - State: closed - Opened by nroehner almost 7 years ago - 1 comment
Labels: Bug

#193 - Unit test error with python 3

Issue - State: closed - Opened by tcmitchell almost 7 years ago - 1 comment

#192 - Wiki should have instructions for generating Inno setup scripts

Issue - State: closed - Opened by bbartley almost 7 years ago - 1 comment

#191 - Error building 32 bit Python binding for Windows

Issue - State: closed - Opened by kirichoi almost 7 years ago - 4 comments
Labels: Bug, Priority

#190 - v2.3.0.0

Pull Request - State: closed - Opened by bbartley almost 7 years ago

#189 - Prepare release version 2.3.0

Pull Request - State: closed - Opened by kirichoi almost 7 years ago

#188 - Replaced last occurrence of obj_id with sbol_obj.identity.get() to avoid using obj_id be…

Pull Request - State: closed - Opened by nroehner almost 7 years ago - 1 comment

#187 - Test suite failure

Issue - State: closed - Opened by kirichoi about 7 years ago - 11 comments
Labels: Question, Priority

#186 - Double check and update the document

Issue - State: open - Opened by kirichoi about 7 years ago

#185 - Issue with building on Visual Studio

Issue - State: closed - Opened by kirichoi about 7 years ago - 4 comments
Labels: Bug, Priority

#184 - CmakeList

Pull Request - State: closed - Opened by kirichoi about 7 years ago

#183 - Add a property store in SBOLObject specifically for ReferencedObject properties

Issue - State: open - Opened by bbartley about 7 years ago

#182 - Integrate round-trip test suite as a git submodule

Issue - State: closed - Opened by bbartley over 7 years ago - 3 comments

#181 - Add example documentation for defining an extension class

Issue - State: open - Opened by bbartley over 7 years ago
Labels: Documentation

#180 - Support additional languages via swig

Issue - State: open - Opened by udp over 7 years ago - 1 comment
Labels: Enhancement

#179 - copy method should be renamed to export because that's a more accurate description of how it behaves

Issue - State: closed - Opened by bbartley over 7 years ago

#178 - Refactor regex

Issue - State: closed - Opened by kirichoi over 7 years ago - 1 comment
Labels: Enhancement, Priority

#177 - SBOL_TEST requires linking to Python libraries

Issue - State: open - Opened by kirichoi over 7 years ago - 8 comments
Labels: Bug, Priority

#176 - Documentation for new developers

Issue - State: open - Opened by bbartley over 7 years ago - 1 comment
Labels: Documentation

#175 - warning: dynamic_cast can never succeed

Issue - State: open - Opened by kirichoi over 7 years ago - 2 comments

#174 - Clean up deprecated JsonCpp functions

Issue - State: open - Opened by kirichoi over 7 years ago
Labels: Enhancement

#173 - Include static dependencies on Linux with PIC support

Issue - State: closed - Opened by kirichoi over 7 years ago - 1 comment
Labels: Enhancement, Priority

#172 - Linux build with python3 wrapper error: `set_target_properties Can not find target to add properties to: _libsbol`

Issue - State: closed - Opened by IanLondon over 7 years ago - 7 comments

#171 - pySBOL remove() method causes Python to crash

Issue - State: open - Opened by kirichoi over 7 years ago - 3 comments
Labels: Bug

#170 - Develop

Pull Request - State: closed - Opened by bbartley over 7 years ago

#169 - Getting an object with displayID vs full URI

Issue - State: closed - Opened by bbartley over 7 years ago

#168 - Proc master

Pull Request - State: closed - Opened by kirichoi over 7 years ago

#167 - Minor bug fixes and Travis Support

Pull Request - State: closed - Opened by kirichoi over 7 years ago

#166 - Travis support

Pull Request - State: closed - Opened by kirichoi over 7 years ago

#165 - Add Travis support

Pull Request - State: closed - Opened by kirichoi over 7 years ago

#164 - Implement SEP 14

Issue - State: open - Opened by bbartley over 7 years ago - 2 comments
Labels: Enhancement

#163 - Implement ComponentDerivation

Issue - State: closed - Opened by bbartley over 7 years ago
Labels: Enhancement

#162 - Complete Provenance classes

Issue - State: closed - Opened by bbartley over 7 years ago

#161 - Update docs/Fix #153

Pull Request - State: closed - Opened by kirichoi over 7 years ago

#160 - Version 2.2.0

Pull Request - State: closed - Opened by kirichoi over 7 years ago

#159 - Implement Sequence::compile as an alias for Sequence::assemble

Issue - State: closed - Opened by bbartley over 7 years ago - 1 comment
Labels: Enhancement

#158 - Document constructor should accept a file argument

Issue - State: closed - Opened by bbartley over 7 years ago - 1 comment
Labels: Enhancement

#157 - setOption should accept boolean arguments

Issue - State: closed - Opened by bbartley over 7 years ago
Labels: Enhancement

#156 - libSBOL fails to build on VS

Issue - State: closed - Opened by kirichoi over 7 years ago - 2 comments
Labels: Bug, Priority

#155 - Implement getitem method for SearchQuery object

Issue - State: closed - Opened by bbartley over 7 years ago - 1 comment

#154 - Implement searchCount

Issue - State: closed - Opened by bbartley over 7 years ago - 1 comment

#153 - Some SWIG extension code in C++ source needs to be conditionally compiled with #IFDEF .. #ENDIF

Issue - State: closed - Opened by bbartley over 7 years ago

#152 - Build path for Python wrappers on Windows is not correct

Issue - State: closed - Opened by bbartley over 7 years ago - 2 comments

#151 - Installing on BioLinux

Issue - State: closed - Opened by kirichoi almost 8 years ago - 2 comments
Labels: Priority

#150 - Datetime

Pull Request - State: closed - Opened by bbartley almost 8 years ago

#149 - Implement advanced search options in SynBioHub API

Issue - State: closed - Opened by bbartley almost 8 years ago

#148 - Get total count of objects in a Document

Issue - State: closed - Opened by bbartley almost 8 years ago

#147 - improve addToDocument method for better usability of SBOL extension classes in pySBOL

Issue - State: closed - Opened by bbartley almost 8 years ago

#146 - Rest API feature

Pull Request - State: closed - Opened by bbartley almost 8 years ago

#145 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi almost 8 years ago

#144 - Python 2 bindings not generated on Debian

Issue - State: closed - Opened by stationarysalesman almost 8 years ago - 9 comments
Labels: Bug, Urgent, Priority

#143 - Upload tutorial examples

Issue - State: open - Opened by tramyn almost 8 years ago

#142 - Upload videos of compiling examples on different IDE tool

Issue - State: open - Opened by tramyn almost 8 years ago
Labels: Enhancement

#141 - Destructor for SBOLObject class should be recursive

Issue - State: closed - Opened by bbartley almost 8 years ago

#140 - Memory management for Python bindings

Issue - State: open - Opened by bbartley almost 8 years ago

#139 - Create sourceforge page for binaries

Issue - State: closed - Opened by kirichoi almost 8 years ago - 2 comments
Labels: Enhancement

#138 - Add sentence and link to release pages telling people how to install Mac and Linux

Issue - State: open - Opened by hsauro almost 8 years ago
Labels: Priority, Documentation

#137 - Needs a method for applying a callback function to every node in the ComponentDefinition / ModuleDefinition hierarchies

Issue - State: closed - Opened by bbartley about 8 years ago

#136 - pull to HEAD

Pull Request - State: closed - Opened by kirichoi about 8 years ago

#135 - Develop

Pull Request - State: closed - Opened by bbartley about 8 years ago

#134 - Change extension object constructor from protected to public

Issue - State: open - Opened by bbartley about 8 years ago
Labels: Enhancement

#133 - Clean up the code to remove exporting STL class

Issue - State: open - Opened by kirichoi about 8 years ago - 2 comments
Labels: Enhancement

#132 - Update validation options

Issue - State: closed - Opened by bbartley about 8 years ago
Labels: Urgent, Priority

#131 - Deprecate specialized methods for setting library configuration options. Use getOption and setOption instead

Issue - State: open - Opened by bbartley about 8 years ago
Labels: Enhancement

#124 - Namespace is not required for URIs

Issue - State: open - Opened by cjmyers about 8 years ago - 1 comment
Labels: Priority

#122 - Empty strings should be preserved

Issue - State: open - Opened by cjmyers about 8 years ago - 2 comments
Labels: Priority

#115 - No DLLs are distributed with the Windows binaries

Issue - State: open - Opened by hsauro about 8 years ago - 6 comments
Labels: Enhancement, Priority

#96 - Create video on how to compile libSBOL

Issue - State: open - Opened by hsauro about 8 years ago
Labels: Documentation

#91 - Block setters for identity, persistentIdentity, and version properties

Issue - State: open - Opened by bbartley about 8 years ago
Labels: Priority

#85 - Implement validation rules

Issue - State: open - Opened by bbartley about 8 years ago

#50 - Implement continuous integration

Issue - State: closed - Opened by kirichoi over 8 years ago - 1 comment
Labels: Enhancement

GitHub / SynBioDex/libSBOL issues and pull requests