Sung-Huan/ANNOgesic issues and pull requests

#40 - sRNA target prediction error

Issue - State: closed - Opened by cmetadea 11 months ago - 5 comments

#39 - annogesic from nanopore transcriptomic output

Issue - State: closed - Opened by cmetadea 11 months ago - 2 comments

#38 - annogesic tss_ps: understanding the "--condition_names" error

Issue - State: closed - Opened by kmuench 12 months ago - 1 comment

#37 - Use normalized or raw coverage files for ANNOgesic?

Issue - State: closed - Opened by kmuench 12 months ago - 1 comment

#36 - annogesic: error: unrecognized arguments: --tsspredator_jar TSSpredator-1.1beta.jar

Issue - State: closed - Opened by KMS-Rock over 1 year ago - 3 comments

#35 - TSSpredator-1.06.jar not found during Docker build

Issue - State: closed - Opened by vdejager almost 2 years ago - 1 comment

#34 - tex_notex_libs formatting

Issue - State: closed - Opened by gcabebe about 2 years ago - 4 comments

#33 - TAP-only (no TEX) dRNA-seq datasets

Issue - State: closed - Opened by simone-pignotti about 2 years ago - 2 comments

#32 - TSSpredator error

Issue - State: closed - Opened by Rexomania1 over 2 years ago - 6 comments

#31 - Read-only file system

Issue - State: closed - Opened by sternp over 2 years ago - 1 comment

#30 - --tex_notex_libs was assinged incorrectly

Issue - State: closed - Opened by sternp over 2 years ago - 6 comments

#29 - Installation directory

Issue - State: closed - Opened by sternp over 2 years ago

#28 - optimize_tss_ps error:TypeError: int() argument must be a string, a bytes-like object or a number, not 'NoneType'

Issue - State: closed - Opened by Blehri over 2 years ago - 6 comments

#27 - Update tutorial.rst

Pull Request - State: closed - Opened by RabeaMue almost 3 years ago

#26 - Path to instal sgemehl in get_package_database.sh is old

Issue - State: closed - Opened by g1o almost 3 years ago - 1 comment

#25 - optimization of TSS error

Issue - State: closed - Opened by HaoyuZhiShiJiee almost 3 years ago - 8 comments

#24 - Merging results srna_target, wrong column names

Issue - State: closed - Opened by gprezza over 3 years ago - 2 comments

#23 - Predicted sRNAs seem too long

Issue - State: closed - Opened by StephenLi55 over 3 years ago - 1 comment

#22 - Transcript detection error

Issue - State: closed - Opened by gjh34 almost 4 years ago - 7 comments

#21 - sRNA prediction error

Issue - State: closed - Opened by Rexomania1 about 4 years ago - 14 comments

#20 - too many warnings in target prediction

Issue - State: closed - Opened by elhossary about 4 years ago - 6 comments

#19 - Multiple data set

Issue - State: closed - Opened by Rexomania1 about 4 years ago - 2 comments

#18 - Promoter detection ,problem with FASTA file

Issue - State: closed - Opened by IgnatiusPang over 4 years ago - 5 comments

#17 - UTR detection error, do not know how to resolve.

Issue - State: closed - Opened by IgnatiusPang over 4 years ago - 7 comments

#16 - gff3 error

Issue - State: closed - Opened by Rexomania1 over 4 years ago - 11 comments

#15 - Transcript command, Comparison step, division by zero error

Issue - State: closed - Opened by IgnatiusPang over 4 years ago - 3 comments

#14 - Error in sRNA_target prediction

Issue - State: closed - Opened by elhossary over 4 years ago - 1 comment

#13 - Error in annotation transfer subcommand

Issue - State: closed - Opened by elhossary over 4 years ago - 3 comments

#12 - TSSpredator parameter defaults

Issue - State: closed - Opened by apredeus over 4 years ago - 4 comments

#11 - Transcript detection

Issue - State: closed - Opened by StephenLi55 over 4 years ago - 32 comments

#10 - The use of paramters produced by optimize TSS/PS feature

Issue - State: closed - Opened by elhossary over 4 years ago - 7 comments

#9 - sRNA prediction from RNA-seq data

Issue - State: closed - Opened by StephenLi55 almost 5 years ago - 1 comment

#8 - ERROR: int is not iterable, in promoter prediction subcommand

Issue - State: closed - Opened by elhossary over 5 years ago - 2 comments

#7 - Missing file error where it is generated temprory by the pipeline in sRNA detection subcommand

Issue - State: closed - Opened by elhossary over 5 years ago - 2 comments

#6 - TSS prediction fails with some cases where the gff files has more than one accession numbers

Issue - State: closed - Opened by elhossary over 5 years ago - 2 comments

#5 - Manually annotated GFF

Issue - State: closed - Opened by apredeus almost 6 years ago - 5 comments

#4 - Wig file creation and normalization

Issue - State: closed - Opened by apredeus almost 6 years ago - 7 comments

#3 - Conda recipe?

Issue - State: closed - Opened by apredeus almost 6 years ago - 2 comments

#2 - Improve error messages

Pull Request - State: closed - Opened by konrad almost 8 years ago

#1 - Minor rearrangements and cleaning up

Pull Request - State: closed - Opened by konrad over 8 years ago

GitHub / Sung-Huan/ANNOgesic issues and pull requests