Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / StochSS/SpatialPy issues and pull requests

#359 - Mdip-cleanup

Pull Request - State: open - Opened by mdip226 about 1 year ago

#358 - Possible import issue

Issue - State: open - Opened by mdip226 about 1 year ago - 1 comment

#357 - broken docs link

Pull Request - State: open - Opened by mdip226 about 1 year ago

#356 - Fixed imports.

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago

#355 - System testing

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago
Labels: enhancement

#354 - Make test to run a single model once - need to check compiler

Issue - State: open - Opened by briandrawert over 1 year ago
Labels: enhancement

#353 - v1.2.2 Release

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago

#352 - Implement Tension Instability

Issue - State: open - Opened by BryanRumsey over 1 year ago
Labels: enhancement

#351 - Implement Solid

Issue - State: open - Opened by BryanRumsey over 1 year ago
Labels: enhancement

#350 - Implement Sheer modulus

Issue - State: open - Opened by BryanRumsey over 1 year ago
Labels: enhancement

#349 - Fix result object multitrajectory

Pull Request - State: closed - Opened by briandrawert over 1 year ago
Labels: bug

#348 - Plotting functions fail for multi trajectory results

Issue - State: closed - Opened by BryanRumsey over 1 year ago
Labels: bug

#347 - Enable simulation timeouts

Pull Request - State: closed - Opened by briandrawert over 1 year ago
Labels: bug

#346 - Copyright Updates

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago
Labels: enhancement

#345 - Release 1.2.1

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago

#344 - HOTFIX: Remove Actions

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago

#343 - HOTFIX: Lattice Numerical Error

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago

#342 - HOTFIX: Plotly Plotting

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago

#341 - Notebook plotting display using plotly fails

Issue - State: closed - Opened by BryanRumsey over 1 year ago
Labels: bug, ✔️​

#340 - Remove vestigial profiling code

Issue - State: open - Opened by briandrawert over 1 year ago
Labels: cleanup

#339 - Investigate bounce sensitivity in the gravity example

Issue - State: open - Opened by BryanRumsey over 1 year ago
Labels: question

#338 - HOTFIX: File Lattice Type_IDs

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago

#337 - HOTFIX: Auto-Update Docs

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago

#336 - Release v1.2.0

Pull Request - State: closed - Opened by BryanRumsey over 1 year ago

#335 - Finish converting C files to C++

Pull Request - State: closed - Opened by jtcooper10 almost 2 years ago

#334 - HOTFIX: Remove Action

Pull Request - State: closed - Opened by BryanRumsey almost 2 years ago

#333 - HOTFIX: Lattice Divide By Zero Error

Pull Request - State: closed - Opened by BryanRumsey almost 2 years ago

#332 - Pylint Github Action

Pull Request - State: closed - Opened by BryanRumsey almost 2 years ago
Labels: enhancement

#331 - Testing auto deploy docs

Pull Request - State: closed - Opened by briandrawert almost 2 years ago

#330 - Replace Makefile build back end with SConstruct

Pull Request - State: closed - Opened by jtcooper10 almost 2 years ago - 1 comment

#329 - HOTFIX: Homo-Dimer Reaction Propensities

Pull Request - State: closed - Opened by BryanRumsey almost 2 years ago

#328 - Homo-dimer reaction propensities are incorrect

Issue - State: closed - Opened by BryanRumsey almost 2 years ago
Labels: bug, ✔️​

#327 - Release v1.1.2

Pull Request - State: closed - Opened by BryanRumsey almost 2 years ago

#326 - Fix 325

Pull Request - State: closed - Opened by briandrawert almost 2 years ago
Labels: bug

#325 - Problematic results for a simple reversible autocatalytic reaction

Issue - State: closed - Opened by BryanRumsey almost 2 years ago - 1 comment
Labels: bug

#324 - Investigate loading times for plotting simulation results

Issue - State: open - Opened by BryanRumsey about 2 years ago
Labels: question

#323 - Need to support specific case when generating csv files

Issue - State: open - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#322 - Need to add property results to csv files

Issue - State: open - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#321 - Initial MinGW compatibility updates

Pull Request - State: closed - Opened by jtcooper10 about 2 years ago

#320 - Bug: Compilation of README model fails

Issue - State: closed - Opened by WarddeRidder about 2 years ago - 2 comments
Labels: ✔️​, Response Requested

#319 - Release v1.1.1

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago

#318 - Release v1.1.0

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago

#317 - Review changes

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#316 - Pre v1.1 staging

Pull Request - State: closed - Opened by briandrawert about 2 years ago

#315 - Update docs for v1.1

Pull Request - State: closed - Opened by briandrawert about 2 years ago

#314 - Fixes #313 - broken stochastic diffusion

Pull Request - State: closed - Opened by briandrawert about 2 years ago
Labels: bug

#313 - Stochastic diffusion not working correctly in v1.0.4

Issue - State: closed - Opened by briandrawert about 2 years ago
Labels: bug

#312 - Scaling Transformations

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#311 - Reflection Transformation

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#310 - Need transformation for scaling

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement, ✔️​

#309 - Need transformation for reflection

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement, ✔️​

#308 - Examples with actions

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#307 - Update documentation

Issue - State: closed - Opened by BryanRumsey about 2 years ago

#306 - Update examples to use new actions

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement, ✔️​

#305 - Domain Actions

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#304 - Transformations Module

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#303 - Lattice Module

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#302 - Stage Release v1.1.0

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago

#301 - Combinatory Geometry

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement

#300 - HOTFIX: `Domain.add_point` defaults

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago

#299 - Defaults for `vol` and `mass` in `Domain.add_point` are incorrect

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: bug, ✔️​

#298 - Refactor the class methods to use actions

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: refactor, ✔️​

#297 - Need a preview functions for actions.

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement, ✔️​

#296 - Implement domain actions (fill, set, remove)

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement, refactor, ✔️​

#295 - Need to create apply functions for actions.

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement, ✔️​

#294 - Need to create a Transformation class and subclasses

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement, ✔️​

#293 - Need to create a Lattice classes

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement, ✔️​

#292 - Need to create a Geometry subclass for geometric combinations

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: enhancement, ✔️​

#291 - Geometry/Domain refactor

Issue - State: closed - Opened by briandrawert about 2 years ago
Labels: enhancement, ✔️​

#290 - Closes #289

Pull Request - State: closed - Opened by briandrawert about 2 years ago

#289 - Old NRM folder should be removed

Issue - State: closed - Opened by briandrawert about 2 years ago
Labels: refactor, ✔️​

#288 - Staging

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago

#285 - HOTFIX: Plotting Empty Domain

Pull Request - State: closed - Opened by BryanRumsey about 2 years ago

#284 - Plot types fails when the domain contains no particles

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: bug, ✔️​

#283 - Total volume is calculated incorrectly when building 2D and 3D domains

Issue - State: closed - Opened by BryanRumsey about 2 years ago
Labels: bug, ✔️​

#278 - Need to add a basic example to the main README.md

Issue - State: closed - Opened by BryanRumsey over 2 years ago
Labels: enhancement, ✔️​

#277 - Need a README.md file for examples

Issue - State: closed - Opened by BryanRumsey over 2 years ago
Labels: enhancement, ✔️​

#276 - Refactor timespan to only include output steps

Issue - State: open - Opened by BryanRumsey over 2 years ago
Labels: enhancement

#275 - timestep_size should be renamed tau_step, moved to Solver

Issue - State: open - Opened by briandrawert over 2 years ago
Labels: enhancement

#265 - Run coverage

Pull Request - State: closed - Opened by BryanRumsey over 2 years ago
Labels: enhancement

#253 - Simulation error is raised when user provides a timeout

Issue - State: closed - Opened by BryanRumsey over 2 years ago
Labels: bug

#246 - Visualization Module

Pull Request - State: closed - Opened by BryanRumsey over 2 years ago
Labels: enhancement

#245 - Enhance Visualization

Issue - State: open - Opened by briandrawert over 2 years ago
Labels: enhancement

#244 - Need to release SpatialPy via CondaForge

Issue - State: open - Opened by briandrawert over 2 years ago
Labels: question

#226 - Auto Build Docs

Pull Request - State: closed - Opened by BryanRumsey over 2 years ago
Labels: enhancement

#216 - Implement export to VTK

Issue - State: open - Opened by BryanRumsey over 2 years ago
Labels: enhancement

#215 - enable pde

Issue - State: open - Opened by BryanRumsey over 2 years ago
Labels: enhancement

#212 - implement InitialConditionFromResult

Issue - State: open - Opened by BryanRumsey over 2 years ago
Labels: enhancement

#201 - Microfluidics Flow past a Yeast Cell

Pull Request - State: open - Opened by BryanRumsey almost 3 years ago
Labels: enhancement

#198 - Make example "Microfludics flow past yeast cell"

Issue - State: open - Opened by briandrawert almost 3 years ago
Labels: enhancement

#196 - adding test to check all notebooks.

Pull Request - State: open - Opened by seanebum almost 3 years ago
Labels: enhancement

#195 - Create "Sploosh" model!

Issue - State: open - Opened by briandrawert almost 3 years ago
Labels: enhancement

#190 - Yeast cell mating projection growth example

Pull Request - State: open - Opened by BryanRumsey almost 3 years ago
Labels: enhancement

#181 - Run Example notebooks as a unit test

Issue - State: open - Opened by briandrawert almost 3 years ago - 1 comment

#171 - MinCDE and Hes1 models give (slightly) incorrect results

Issue - State: open - Opened by briandrawert almost 3 years ago - 1 comment
Labels: bug

#167 - Stop using VTK files for result files

Issue - State: open - Opened by briandrawert about 3 years ago
Labels: enhancement

#166 - Fluid Structure Interaction Example

Pull Request - State: open - Opened by BryanRumsey about 3 years ago

#155 - Add "yeast cell mating projection growth" example

Issue - State: open - Opened by briandrawert about 3 years ago
Labels: enhancement

#154 - Add "fluid-structure interaction" example

Issue - State: open - Opened by briandrawert about 3 years ago
Labels: enhancement