Ecosyste.ms: Issues
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GitHub / StatBiomed/SpatialDM issues and pull requests
#32 - Memory limit during sdm.spatialdm_local
Issue -
State: open - Opened by Jiayi-Zheng 25 days ago
- 1 comment
#31 - Question about global permutation test
Issue -
State: open - Opened by sealx017 about 1 month ago
#30 - InvalidIndexError when running sdm.extract_lr(adata, 'human', min_cell=3)
Issue -
State: open - Opened by Smilenone 6 months ago
- 2 comments
#29 - The process of 'Spatial Clustering of Local Spots' using SpatialDE is taking an excessive amount of time. Could I have overlooked some parameters?
Issue -
State: open - Opened by ABU-TO 9 months ago
- 2 comments
#28 - I keep getting error when running spatialdm_local AttributeError: 'NoneType' object has no attribute 'to_adata'
Issue -
State: open - Opened by smk5g5 9 months ago
- 6 comments
#27 - Load 10xgenomics Visium data using scanpy
Issue -
State: closed - Opened by maiskovich 11 months ago
#26 - Load 10xgenomics Visium data using scanpy
Issue -
State: closed - Opened by maiskovich 11 months ago
#25 - Bugs discovery for single-cell level spatialDM
Issue -
State: open - Opened by HelloWorldLTY 11 months ago
- 5 comments
#24 - time consuming about permutation!
Issue -
State: closed - Opened by EddieLv about 1 year ago
#23 - reading in h5ad file
Issue -
State: open - Opened by anamaria-uofg about 1 year ago
- 1 comment
#22 - Help with the simulations from the paper
Issue -
State: open - Opened by hiraksarkar about 1 year ago
- 2 comments
#21 - Avoid 'np.float' Deprecation Error for numpy>=1.20
Pull Request -
State: open - Opened by yuifu about 1 year ago
#20 - Code Update Request: Avoid 'np.float' Deprecation Error in melanoma.ipynb
Issue -
State: open - Opened by yuifu about 1 year ago
- 6 comments
#19 - api dataset
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#18 - api dataset
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#17 - Dev yoyo
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#16 - api dataset
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#15 - Dev yoyo
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#14 - api dataset
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#13 - api dataset
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#12 - api dataset
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#11 - api dataset
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#10 - Dev yoyo
Pull Request -
State: closed - Opened by leeyoyohku over 1 year ago
#9 - Support sparse X and weights
Pull Request -
State: closed - Opened by huangyh09 over 1 year ago
#8 - Support sparse X and weights
Pull Request -
State: closed - Opened by huangyh09 over 1 year ago
#7 - Update dev_yh branch from main
Pull Request -
State: closed - Opened by huangyh09 over 1 year ago
#6 - spatialdm_global does not work with a list of specified index, pair_selection_matrix would change adata
Issue -
State: open - Opened by wyq977 over 1 year ago
- 1 comment
#5 - weight_matrix with n_nearest_neighbors and n_neighbors
Issue -
State: open - Opened by wyq977 over 1 year ago
- 1 comment
#4 - positive mask commented out + other questions
Issue -
State: closed - Opened by dbdimitrov almost 2 years ago
- 3 comments
#3 - Supp Note 1 and Example
Issue -
State: closed - Opened by wyq977 almost 2 years ago
- 1 comment
#2 - fix readthedocs badge
Pull Request -
State: closed - Opened by wyq977 almost 2 years ago
#1 - support matrix-based global I
Pull Request -
State: closed - Opened by huangyh09 about 2 years ago