Ecosyste.ms: Issues

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GitHub / StatBiomed/SpatialDM issues and pull requests

#34 - Dev jacky

Pull Request - State: closed - Opened by jackywangtj66 about 1 month ago

#33 - planning for upgrading in the next 10 days

Issue - State: open - Opened by huangyh09 4 months ago - 1 comment

#32 - Memory limit during sdm.spatialdm_local

Issue - State: open - Opened by Jiayi-Zheng 6 months ago - 1 comment

#31 - Question about global permutation test

Issue - State: open - Opened by sealx017 6 months ago

#30 - InvalidIndexError when running sdm.extract_lr(adata, 'human', min_cell=3)

Issue - State: open - Opened by Smilenone 11 months ago - 2 comments

#27 - Load 10xgenomics Visium data using scanpy

Issue - State: closed - Opened by maiskovich over 1 year ago

#26 - Load 10xgenomics Visium data using scanpy

Issue - State: closed - Opened by maiskovich over 1 year ago

#25 - Bugs discovery for single-cell level spatialDM

Issue - State: open - Opened by HelloWorldLTY over 1 year ago - 5 comments

#24 - time consuming about permutation!

Issue - State: closed - Opened by EddieLv over 1 year ago

#23 - reading in h5ad file

Issue - State: open - Opened by anamaria-uofg over 1 year ago - 1 comment

#22 - Help with the simulations from the paper

Issue - State: open - Opened by hiraksarkar over 1 year ago - 2 comments

#21 - Avoid 'np.float' Deprecation Error for numpy>=1.20

Pull Request - State: open - Opened by yuifu over 1 year ago

#20 - Code Update Request: Avoid 'np.float' Deprecation Error in melanoma.ipynb

Issue - State: open - Opened by yuifu over 1 year ago - 6 comments

#19 - api dataset

Pull Request - State: closed - Opened by leeyoyohku over 1 year ago

#18 - api dataset

Pull Request - State: closed - Opened by leeyoyohku over 1 year ago

#17 - Dev yoyo

Pull Request - State: closed - Opened by leeyoyohku over 1 year ago

#16 - api dataset

Pull Request - State: closed - Opened by leeyoyohku over 1 year ago

#15 - Dev yoyo

Pull Request - State: closed - Opened by leeyoyohku over 1 year ago

#14 - api dataset

Pull Request - State: closed - Opened by leeyoyohku over 1 year ago

#13 - api dataset

Pull Request - State: closed - Opened by leeyoyohku over 1 year ago

#12 - api dataset

Pull Request - State: closed - Opened by leeyoyohku over 1 year ago

#11 - api dataset

Pull Request - State: closed - Opened by leeyoyohku over 1 year ago

#10 - Dev yoyo

Pull Request - State: closed - Opened by leeyoyohku almost 2 years ago

#9 - Support sparse X and weights

Pull Request - State: closed - Opened by huangyh09 almost 2 years ago

#8 - Support sparse X and weights

Pull Request - State: closed - Opened by huangyh09 almost 2 years ago

#7 - Update dev_yh branch from main

Pull Request - State: closed - Opened by huangyh09 almost 2 years ago

#5 - weight_matrix with n_nearest_neighbors and n_neighbors

Issue - State: open - Opened by wyq977 about 2 years ago - 1 comment

#4 - positive mask commented out + other questions

Issue - State: closed - Opened by dbdimitrov about 2 years ago - 3 comments

#3 - Supp Note 1 and Example

Issue - State: closed - Opened by wyq977 over 2 years ago - 1 comment

#2 - fix readthedocs badge

Pull Request - State: closed - Opened by wyq977 over 2 years ago

#1 - support matrix-based global I

Pull Request - State: closed - Opened by huangyh09 over 2 years ago