SpikeInterface/spikesorters issues and pull requests

#226 - update readme

Pull Request - State: closed - Opened by samuelgarcia about 3 years ago

#225 - New version updates

Pull Request - State: closed - Opened by alejoe91 over 3 years ago

#223 - Run sorters in docker through hither

Pull Request - State: open - Opened by alejoe91 over 3 years ago

#222 - Expose tInc param in HS

Pull Request - State: closed - Opened by alejoe91 over 3 years ago

#221 - Expose tInc arg HS

Pull Request - State: closed - Opened by alejoe91 over 3 years ago

#219 - combinato for multichannel recordings

Pull Request - State: closed - Opened by ferchaure over 3 years ago - 2 comments

#218 - remove space

Pull Request - State: closed - Opened by timsainb over 3 years ago

#215 - Change ml_ms4alg to mountainsort4

Pull Request - State: open - Opened by khl02007 over 3 years ago - 6 comments

#213 - DOC: Update docstrings

Pull Request - State: closed - Opened by TomDonoghue over 3 years ago

#210 - changed default noise threshold to 3.0 x SD

Pull Request - State: closed - Opened by catubc over 3 years ago - 2 comments

#208 - yass; set phy file flag to off

Pull Request - State: closed - Opened by catubc over 3 years ago - 2 comments

#207 - Propagate raise_error to get_results

Pull Request - State: closed - Opened by alejoe91 over 3 years ago - 13 comments

#203 - Copy epochs timestamps

Pull Request - State: closed - Opened by alejoe91 over 3 years ago

#202 - Prepare for new release

Pull Request - State: closed - Opened by alejoe91 almost 4 years ago

#201 - Set sorter paths as Path or str type

Pull Request - State: closed - Opened by alejoe91 almost 4 years ago

#196 - Move HDSort writing to spikesorters

Pull Request - State: closed - Opened by alejoe91 almost 4 years ago

#195 - fix ks3 path

Pull Request - State: closed - Opened by gmaggi almost 4 years ago - 1 comment

#193 - Add kilosort3 sorter

Pull Request - State: closed - Opened by m-col almost 4 years ago - 3 comments

#191 - Update MANIFEST for KS2.5

Pull Request - State: closed - Opened by alejoe91 almost 4 years ago

#189 - Added n_jobs_bin and chunk_mb to IC, fixed params description in KS2 …

Pull Request - State: closed - Opened by alejoe91 almost 4 years ago

#187 - Updates for new release

Pull Request - State: closed - Opened by alejoe91 almost 4 years ago

#186 - added Yass

Pull Request - State: closed - Opened by catubc almost 4 years ago - 17 comments

#184 - Add write binary args and unified file creation/deletion

Pull Request - State: closed - Opened by alejoe91 about 4 years ago - 1 comment

#183 - Change default detect_threshold in Kilosort 2 and 2.5

Pull Request - State: closed - Opened by alowet about 4 years ago - 1 comment

#182 - fixes output_folder in other disk [Windows]

Pull Request - State: closed - Opened by ferchaure about 4 years ago - 1 comment

#180 - Add support for Kilosort2.5

Pull Request - State: closed - Opened by alowet about 4 years ago - 4 comments

#179 - adds combinato sorter

Pull Request - State: closed - Opened by ferchaure about 4 years ago - 18 comments

#176 - fix renamed installed method on wc

Pull Request - State: closed - Opened by ferchaure over 4 years ago - 5 comments

#175 - fix typo in KS

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#174 - Check installed sorter list is now dynamic with functions.

Pull Request - State: closed - Opened by samuelgarcia over 4 years ago - 1 comment

#173 - fix parameters issues in wc

Pull Request - State: closed - Opened by ferchaure over 4 years ago - 1 comment

#171 - Re-insert SC tests

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 5 comments

#170 - sorter using a new feature of waveclus

Pull Request - State: closed - Opened by ferchaure over 4 years ago - 4 comments

#161 - Added params and sorter descriptions for all sorters

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 2 comments

#158 - Change spikesorters_log.txt to sortername.log

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#157 - Use HDSortSortingExtractor for HDsort

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#156 - ShellScript output is now redirected to Jupyter Notebook as well as a log file

Pull Request - State: closed - Opened by manimoh over 4 years ago - 22 comments

#155 - New waveclus spikesorter, remove argument for Matlab on windows

Pull Request - State: closed - Opened by ferchaure over 4 years ago - 4 comments

#148 - Use joblib instead of threading for parallel spike sorting

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 3 comments

#146 - Disable parallel thread for tridesclous, moutainsort4 and herdingspikes

Pull Request - State: closed - Opened by samuelgarcia over 4 years ago - 3 comments

#145 - HS2 updates and KS2 fix

Pull Request - State: closed - Opened by mhhennig over 4 years ago

#144 - not working, added four letters

Pull Request - State: closed - Opened by mhhennig over 4 years ago - 5 comments

#143 - Set absolute path for matlab sorters

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#139 - KS2 keep_good_only parameter

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#138 - Add run_ to sorter scripts

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 2 comments

#136 - Prepare tridesclous 1.6 release.

Pull Request - State: closed - Opened by samuelgarcia over 4 years ago

#134 - Check if recording is filtered and print warning if filter is true

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#133 - Fix dummy location creation

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#132 - Change tmp to output in output_folder name

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 1 comment

#130 - Proof of concept of dask client for run_sorters

Pull Request - State: closed - Opened by samuelgarcia over 4 years ago - 15 comments

#129 - control in run_sorters(...) if raise_error when sorter.run()

Pull Request - State: closed - Opened by samuelgarcia over 4 years ago

#128 - To disable the automatic filters on waveclus

Pull Request - State: closed - Opened by ferchaure over 4 years ago

#127 - Incr version

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#126 - removed gui params

Pull Request - State: closed - Opened by colehurwitz over 4 years ago

#125 - Raise error can be passed as an arg to run_sorter

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#124 - KS2 another typo

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#123 - typo in ks2

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#122 - Standardize calls to bash scripts

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 3 comments

#121 - Expose extra KS1, KS2, and HDsort params

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 1 comment

#119 - Added HDSort and fixed platform on mac

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#117 - Update for 0.9.6

Pull Request - State: closed - Opened by yger over 4 years ago - 1 comment

#116 - Release 0.9.5 improving running times

Pull Request - State: closed - Opened by yger over 4 years ago - 3 comments

#115 - Small tweaks

Pull Request - State: closed - Opened by mhhennig over 4 years ago

#114 - Faster numpy data structure

Pull Request - State: closed - Opened by yger over 4 years ago - 11 comments

#113 - ironclust v5.9.7

Pull Request - State: closed - Opened by jamesjun over 4 years ago - 1 comment

#111 - Fix grouping property in basesorter

Pull Request - State: closed - Opened by alejoe91 almost 5 years ago - 1 comment

#110 - Fix grouping property

Pull Request - State: closed - Opened by alejoe91 almost 5 years ago - 2 comments

#109 - Put warning only when several groups.

Pull Request - State: closed - Opened by samuelgarcia almost 5 years ago - 1 comment

#108 - bad joke.

Pull Request - State: closed - Opened by samuelgarcia almost 5 years ago - 4 comments

#107 - Adjust parameters for low sampling rates.

Pull Request - State: closed - Opened by mhhennig almost 5 years ago - 2 comments

#106 - Updates for Mda-based sorters

Pull Request - State: closed - Opened by alejoe91 almost 5 years ago - 1 comment

#105 - Increase HS2 version to latest release.

Pull Request - State: closed - Opened by mhhennig almost 5 years ago

#104 - Clean and remove grouping and location stuff at sorter class level

Pull Request - State: closed - Opened by samuelgarcia almost 5 years ago - 1 comment

#103 - ironclust default parameters updated (v5.8.5)

Pull Request - State: closed - Opened by jamesjun almost 5 years ago - 5 comments

#102 - Load spike/unit locations as property by default

Pull Request - State: closed - Opened by mhhennig almost 5 years ago

#100 - New default parameters for a better merging in 0.9.2

Pull Request - State: closed - Opened by yger almost 5 years ago - 2 comments

#99 - Prepare release tridesclous 1.5

Pull Request - State: closed - Opened by samuelgarcia almost 5 years ago - 3 comments

#97 - Exposed minfr_goodchannels param

Pull Request - State: closed - Opened by alejoe91 almost 5 years ago

#93 - Some improvement

Pull Request - State: closed - Opened by samuelgarcia almost 5 years ago - 9 comments

#91 - Added docstrings for sorters and cleanup

Pull Request - State: closed - Opened by alejoe91 almost 5 years ago - 5 comments

#89 - Update for 0.9.0

Pull Request - State: closed - Opened by yger almost 5 years ago - 11 comments

#85 - Fix some crashes with SpikeExtractors

Pull Request - State: closed - Opened by yger almost 5 years ago - 1 comment

#84 - Updates for SC 0.8.7

Pull Request - State: closed - Opened by yger almost 5 years ago - 13 comments

#81 - IronClust default parameters changed

Pull Request - State: closed - Opened by alejoe91 almost 5 years ago

#80 - verbose

Pull Request - State: closed - Opened by samuelgarcia almost 5 years ago - 1 comment

#79 - Fix for path names with blanks in linux

Pull Request - State: closed - Opened by mhhennig almost 5 years ago

#77 - Spike detection

Pull Request - State: closed - Opened by alejoe91 about 5 years ago - 12 comments

#74 - Fixes for save_to_probe_file changes

Pull Request - State: closed - Opened by alejoe91 about 5 years ago - 3 comments

#72 - Waveclus fix

Pull Request - State: closed - Opened by alejoe91 about 5 years ago

#71 - skipped all mountainsort and herdingspikes test till travis bugs figu…

Pull Request - State: closed - Opened by colehurwitz about 5 years ago - 3 comments

#70 - IronClust default parameters changed

Pull Request - State: closed - Opened by jamesjun about 5 years ago - 6 comments

#69 - Remove 'nb_max' from public parameters because must be set with auto method

Pull Request - State: closed - Opened by samuelgarcia about 5 years ago

#68 - [WIP] Fixing travis tests

Pull Request - State: closed - Opened by colehurwitz about 5 years ago - 4 comments

#67 - Minor updates in parameter file

Pull Request - State: closed - Opened by yger about 5 years ago - 9 comments

#66 - New bug.

Pull Request - State: closed - Opened by samuelgarcia about 5 years ago - 6 comments

#61 - need location bool and error message

Pull Request - State: closed - Opened by colehurwitz about 5 years ago - 8 comments

#58 - Updated _run functions to be compitable with Windows

Pull Request - State: closed - Opened by Shawn-Guo-CN about 5 years ago - 5 comments

#55 - Updated MANIFEST

Pull Request - State: closed - Opened by alejoe91 about 5 years ago - 1 comment

#54 - gui update

Pull Request - State: closed - Opened by colehurwitz about 5 years ago

#53 - Refractoring: Using ShellScript, Waveclus, Updated KS2 params

Pull Request - State: closed - Opened by alejoe91 about 5 years ago - 10 comments

GitHub / SpikeInterface/spikesorters issues and pull requests