Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / SpatialTranscriptomicsResearch/st_pipeline issues and pull requests

#132 - barcodes position

Issue - State: closed - Opened by xianliaogithub over 1 year ago

#131 - undefined symbol: _intel_fast_memcmp

Issue - State: closed - Opened by xianliaogithub almost 2 years ago - 1 comment

#129 - The function convertEnsemblToNames.py get error!

Issue - State: open - Opened by EddieLv over 2 years ago

#128 - How can i get 'ids' file?

Issue - State: closed - Opened by qijt123 almost 3 years ago - 1 comment

#127 - Issue with demultiplexing using TAGGD.

Issue - State: open - Opened by SalendraSingh about 3 years ago - 1 comment

#126 - Segmentation fault during dataset creation step

Issue - State: open - Opened by JackCollora about 3 years ago - 3 comments

#125 - Running st pipeline unrecognized arguments

Issue - State: open - Opened by ajyaca over 3 years ago - 5 comments

#124 - Could not retrieve index file error

Issue - State: open - Opened by johannesnicolaus over 3 years ago - 2 comments

#123 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 4 years ago

#122 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 4 years ago

#121 - build install failed

Issue - State: open - Opened by ganguvamshi about 4 years ago - 1 comment

#120 - Memory error while sorting bam

Issue - State: closed - Opened by amdixit about 4 years ago - 3 comments

#119 - Could not retrieve index file

Issue - State: closed - Opened by MNM-TB over 4 years ago - 2 comments

#118 - Update from base

Pull Request - State: closed - Opened by jfnavarro over 4 years ago

#117 - overlay molecular data on top of tissue histology

Issue - State: closed - Opened by WT215 over 4 years ago - 2 comments

#116 - Extract allele specific matrices

Issue - State: closed - Opened by WT215 over 4 years ago - 2 comments

#115 - Merge pull request #94 from SpatialTranscriptomicsResearch/master

Pull Request - State: closed - Opened by jfnavarro over 4 years ago

#114 - I've met some Error in `Start filtering raw reads`

Issue - State: closed - Opened by BioAIEvolu about 5 years ago - 8 comments

#113 - "cdistance.o" missing when building pipeline

Issue - State: closed - Opened by fatimasnc over 5 years ago - 1 comment

#112 - Question: are the intermediate BAM files saved?

Issue - State: closed - Opened by Puriney over 5 years ago - 2 comments

#111 - Error STAR

Issue - State: closed - Opened by alessandriLuca over 5 years ago - 13 comments

#110 - cython python3 directives

Pull Request - State: closed - Opened by jsh58 over 5 years ago - 1 comment

#109 - Merge

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#108 - Merge

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#107 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#106 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#105 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#104 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#103 - add temp folder to samtools sort

Pull Request - State: closed - Opened by jsh58 over 5 years ago

#102 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#101 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#100 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#99 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#98 - ST Pipeline release

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#97 - merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#96 - merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#95 - Merge pull request #80 from SpatialTranscriptomicsResearch/master

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#94 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#93 - merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#92 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#91 - Fix for the new format of the spotdetector output spot-data-all where…

Pull Request - State: open - Opened by elhb over 6 years ago - 1 comment

#90 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 6 years ago

#89 - merge from base

Pull Request - State: closed - Opened by jfnavarro almost 7 years ago

#88 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 7 years ago

#87 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 7 years ago

#86 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 7 years ago

#85 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 7 years ago

#84 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 7 years ago

#83 - Parallel filter input 4 v1.6.0

Pull Request - State: closed - Opened by elhb about 7 years ago

#82 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 7 years ago

#81 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 7 years ago

#80 - Added a warning for gene name duplication

Pull Request - State: closed - Opened by elhb about 7 years ago - 4 comments

#79 - Merge pull request #66 from SpatialTranscriptomicsResearch/master

Pull Request - State: closed - Opened by jfnavarro about 7 years ago

#78 - Fixed a small bug with the new commandline argument --star-sort-mem-limit

Pull Request - State: closed - Opened by elhb about 7 years ago

#77 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 7 years ago

#76 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#75 - Merge pull request #63 from SpatialTranscriptomicsResearch/master

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#74 - first fix

Pull Request - State: closed - Opened by elhb over 7 years ago

#73 - sklearn not in requirements.txt

Issue - State: closed - Opened by elhb over 7 years ago

#72 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#71 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#70 - Merge pull request #60 from SpatialTranscriptomicsResearch/master

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#69 - fixing the sam/bam format

Pull Request - State: closed - Opened by elhb over 7 years ago

#68 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#67 - Merge pull request #58 from SpatialTranscriptomicsResearch/master

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#66 - minor changes for subprocessing STAR with bam input

Pull Request - State: closed - Opened by elhb over 7 years ago

#65 - Merge from origin

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#64 - Test anntotation parallel

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#63 - Merge from origin

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#62 - missed to commit these lines last time

Pull Request - State: closed - Opened by elhb over 7 years ago

#61 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#60 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#59 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#58 - Output to bam

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#57 - Bugfix

Pull Request - State: closed - Opened by elhb over 7 years ago

#56 - Proof of concept coordinate parser

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#55 - Small update to qa script

Pull Request - State: closed - Opened by Alexander-Stuckey over 7 years ago - 2 comments

#54 - Update from master

Pull Request - State: closed - Opened by Alexander-Stuckey over 7 years ago

#52 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#51 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#50 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#49 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#48 - Faster infile decompression

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#46 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#45 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#44 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 7 years ago

#43 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago

#42 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago

#41 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago

#40 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago

#39 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago

#38 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago

#37 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago

#36 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago

#35 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago

#34 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 8 years ago