SpatialTranscriptomicsResearch/st_pipeline issues and pull requests

#133 - Error running the pipeline expected str, bytes or os.PathLike object, not NoneType

Issue - State: open - Opened by nishah-27 4 months ago - 2 comments

#132 - barcodes position

Issue - State: closed - Opened by xianliaogithub 11 months ago

#131 - undefined symbol: _intel_fast_memcmp

Issue - State: closed - Opened by xianliaogithub about 1 year ago - 1 comment

#130 - Issue with "Taggd has generated error messages during demultiplexing".

Issue - State: closed - Opened by jiangmengnan over 1 year ago

#129 - The function convertEnsemblToNames.py get error!

Issue - State: open - Opened by EddieLv about 2 years ago

#128 - How can i get 'ids' file?

Issue - State: closed - Opened by qijt123 over 2 years ago - 1 comment

#127 - Issue with demultiplexing using TAGGD.

Issue - State: open - Opened by SalendraSingh over 2 years ago - 1 comment

#126 - Segmentation fault during dataset creation step

Issue - State: open - Opened by JackCollora over 2 years ago - 3 comments

#125 - Running st pipeline unrecognized arguments

Issue - State: open - Opened by ajyaca almost 3 years ago - 5 comments

#124 - Could not retrieve index file error

Issue - State: open - Opened by johannesnicolaus almost 3 years ago - 2 comments

#123 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 3 years ago

#122 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 3 years ago

#121 - build install failed

Issue - State: open - Opened by ganguvamshi over 3 years ago - 1 comment

#120 - Memory error while sorting bam

Issue - State: closed - Opened by amdixit over 3 years ago - 3 comments

#119 - Could not retrieve index file

Issue - State: closed - Opened by MNM-TB over 3 years ago - 2 comments

#118 - Update from base

Pull Request - State: closed - Opened by jfnavarro almost 4 years ago

#117 - overlay molecular data on top of tissue histology

Issue - State: closed - Opened by WT215 about 4 years ago - 2 comments

#116 - Extract allele specific matrices

Issue - State: closed - Opened by WT215 about 4 years ago - 2 comments

#115 - Merge pull request #94 from SpatialTranscriptomicsResearch/master

Pull Request - State: closed - Opened by jfnavarro about 4 years ago

#114 - I've met some Error in `Start filtering raw reads`

Issue - State: closed - Opened by BioAIEvolu over 4 years ago - 8 comments

#113 - "cdistance.o" missing when building pipeline

Issue - State: closed - Opened by fatimasnc almost 5 years ago - 1 comment

#112 - Question: are the intermediate BAM files saved?

Issue - State: closed - Opened by Puriney almost 5 years ago - 2 comments

#111 - Error STAR

Issue - State: closed - Opened by alessandriLuca almost 5 years ago - 13 comments

#110 - cython python3 directives

Pull Request - State: closed - Opened by jsh58 about 5 years ago - 1 comment

#109 - Merge

Pull Request - State: closed - Opened by jfnavarro about 5 years ago

#108 - Merge

Pull Request - State: closed - Opened by jfnavarro about 5 years ago

#107 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 5 years ago

#106 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 5 years ago

#105 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 5 years ago

#104 - Merge from base

Pull Request - State: closed - Opened by jfnavarro about 5 years ago

#103 - add temp folder to samtools sort

Pull Request - State: closed - Opened by jsh58 about 5 years ago

#102 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#101 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#100 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#99 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#98 - ST Pipeline release

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#97 - merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#96 - merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#95 - Merge pull request #80 from SpatialTranscriptomicsResearch/master

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#94 - Merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#93 - merge from base

Pull Request - State: closed - Opened by jfnavarro over 5 years ago

#92 - Merge from base

Pull Request - State: closed - Opened by jfnavarro almost 6 years ago

#91 - Fix for the new format of the spotdetector output spot-data-all where…

Pull Request - State: open - Opened by elhb almost 6 years ago - 1 comment