Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / SomaLogic/SomaDataIO issues and pull requests
#74 - Silence `is_intact_attr()` signaling when called indirectly
Pull Request -
State: closed - Opened by stufield 9 months ago
- 1 comment
#73 - Simplify `tidyr::separate.soma_adat()` S3 method
Pull Request -
State: closed - Opened by stufield 9 months ago
- 1 comment
#72 - Tweak to S3 `tidyr::separate.soma_adat()`
Issue -
State: closed - Opened by stufield 9 months ago
#71 - Stop `is_intact_attr()` from bubbling up messages deep in the call stack
Issue -
State: closed - Opened by stufield 9 months ago
#70 - Issue with duplicated Target names when running t-test box plot code
Issue -
State: open - Opened by barnacj 9 months ago
- 2 comments
Labels: question, tech-support
#69 - Bump year 2024
Pull Request -
State: closed - Opened by stufield 9 months ago
- 1 comment
#68 - Bump year to 2024
Issue -
State: closed - Opened by stufield 9 months ago
#67 - New `grouped_df` class support with `soma_adat` objects
Pull Request -
State: open - Opened by stufield 9 months ago
- 1 comment
#66 - Error when using dplyr::group_by()
Issue -
State: open - Opened by laurapyle 9 months ago
- 12 comments
Labels: enhancement, question
#65 - Further development of the pkgdown website
Pull Request -
State: closed - Opened by stufield 10 months ago
#64 - Add new vignettes for pkgdown
Pull Request -
State: closed - Opened by stufield 10 months ago
- 1 comment
#63 - Standardize LICENSE.md file
Pull Request -
State: closed - Opened by stufield about 1 year ago
#62 - Update _pkgdown.yml with new sysdata functions
Pull Request -
State: closed - Opened by stufield about 1 year ago
#61 - Fix LICENSE syntax and update README
Pull Request -
State: closed - Opened by stufield about 1 year ago
#60 - Remove sysdata.rda internals and replace with user-friendly files
Pull Request -
State: closed - Opened by stufield about 1 year ago
#59 - Expose functions previously in `R/sysdata.rda`
Issue -
State: closed - Opened by stufield about 1 year ago
#58 - Structured adat docs and links
Pull Request -
State: closed - Opened by stufield about 1 year ago
#57 - Change language from "proprietary" -> "structured" in ADAT format description
Issue -
State: closed - Opened by stufield about 1 year ago
#56 - SomaLogic data to PRIDE Archive
Issue -
State: closed - Opened by ypriverol about 1 year ago
- 2 comments
Labels: good first issue, question
#55 - Vertically binding `soma_adat` objects with `rbind()` strips attributes
Issue -
State: open - Opened by MoemenEltobgy over 1 year ago
- 1 comment
#54 - Manual sync sysdata.rda
Pull Request -
State: closed - Opened by stufield over 1 year ago
- 1 comment
#53 - Cleaned up _pkgdown.yml
Pull Request -
State: closed - Opened by stufield over 1 year ago
#52 - Bugfix write adat apply
Pull Request -
State: closed - Opened by stufield over 1 year ago
- 1 comment
#51 - ADAT writer breaks with a single analyte `soma_adat` object
Issue -
State: closed - Opened by stufield over 1 year ago
Labels: bug
#50 - More fine tuned control of GHAs
Pull Request -
State: closed - Opened by stufield over 1 year ago
#49 - Update pkgdown.yaml GitHub Action workflow trigger
Pull Request -
State: closed - Opened by stufield over 1 year ago
- 1 comment
#48 - Add anova vignette
Pull Request -
State: closed - Opened by stufield over 1 year ago
#47 - Create vignette for ANOVA analysis of SomaScan
Issue -
State: closed - Opened by stufield over 1 year ago
#46 - Add vignette for new command line merge tool
Pull Request -
State: closed - Opened by stufield over 1 year ago
#45 - Create vignette on how to use the CLI merge tool
Issue -
State: closed - Opened by stufield over 1 year ago
#44 - Simplify and coverage for getAnalyteInfo()
Pull Request -
State: closed - Opened by stufield over 1 year ago
#43 - Unit test is seq format
Pull Request -
State: closed - Opened by stufield over 1 year ago
- 1 comment
#42 - Tweak vignette readme
Pull Request -
State: closed - Opened by stufield over 1 year ago
#41 - Fix missing closing parens in SomaScanObjects.R
Pull Request -
State: closed - Opened by stufield over 1 year ago
- 1 comment
#40 - Error when using read_adat() + issue in setup script
Issue -
State: closed - Opened by Hijinx725 over 1 year ago
- 2 comments
Labels: bug
#39 - New pkgdown upgrades
Pull Request -
State: closed - Opened by stufield over 1 year ago
- 1 comment
#38 - Clean up redundancy in split vignettes
Pull Request -
State: closed - Opened by stufield over 1 year ago
#37 - Add build-pkgdown branch to GHA
Pull Request -
State: closed - Opened by stufield over 1 year ago
#36 - Add analysis vignettes from readme
Pull Request -
State: closed - Opened by stufield over 1 year ago
- 1 comment
#35 - Simplify README and move sample analyses into vignettes
Issue -
State: closed - Opened by stufield over 1 year ago
#34 - Minor tweaks to unit tests for SeqIds
Pull Request -
State: closed - Opened by stufield over 1 year ago
#33 - Release SomaDataIO 6.0.0 -> CRAN
Issue -
State: closed - Opened by stufield over 1 year ago
#32 - Trim package size to conform to CRAN < 5MB restrictions
Issue -
State: closed - Opened by stufield over 1 year ago
#31 - Add S3 `merge()` method for the `soma_adat` class
Issue -
State: closed - Opened by stufield over 1 year ago
- 1 comment
#30 - Volcano plot
Issue -
State: closed - Opened by MoemenEltobgy over 1 year ago
- 2 comments
Labels: question, tech-support
#29 - Flagged and Normal distribution
Issue -
State: closed - Opened by MoemenEltobgy over 1 year ago
- 2 comments
Labels: question, tech-support
#28 - Summary and relative abundance
Issue -
State: closed - Opened by MoemenEltobgy almost 2 years ago
- 3 comments
Labels: question, tech-support
#27 - Loading an adat
Issue -
State: closed - Opened by MoemenEltobgy almost 2 years ago
- 2 comments
Labels: question
#26 - Update GHA actions -> `@v2` and simplify structure of `*.yaml` files
Issue -
State: closed - Opened by stufield almost 2 years ago
#25 - Add Clinical Data Merging CLI tool
Issue -
State: closed - Opened by stufield almost 2 years ago
#24 - Fix bangs (!) and commas (,) in Header zapping between written ADATs
Issue -
State: closed - Opened by stufield almost 2 years ago
#23 - Compatibility with R version 3.6.*
Issue -
State: open - Opened by jmw86069 about 2 years ago
- 4 comments
Labels: question
#22 - Conversion of data frame to .adat format and applying ANOVA
Issue -
State: open - Opened by Manonanthini about 2 years ago
- 9 comments
Labels: question
#21 - write_adat() should not open in 'append' mode
Issue -
State: closed - Opened by stufield about 2 years ago
Labels: bug
#20 - SomaDataIO on CRAN / Bioconductor
Issue -
State: closed - Opened by lassemaretty about 2 years ago
- 10 comments
Labels: question
#19 - Migrate from `master` -> `main`
Issue -
State: closed - Opened by stufield over 2 years ago
- 1 comment
#18 - write_adat function not working, even on example data that is unaltered.
Issue -
State: closed - Opened by aabarrera2 over 2 years ago
- 13 comments
Labels: bug
#17 - Trouble Parsing ADAT File
Issue -
State: closed - Opened by ruhinaik over 2 years ago
- 3 comments
Labels: question
#16 - error in example code
Issue -
State: closed - Opened by sbbmu over 2 years ago
- 4 comments
Labels: bug, duplicate
#15 - Unable to write out .adat file
Issue -
State: closed - Opened by bbodek over 2 years ago
- 5 comments
Labels: bug
#14 - Release lifting code and tag version
Issue -
State: closed - Opened by stufield almost 3 years ago
#13 - Update `example_data.adat` object sync with SomaLogic-Data repository
Issue -
State: closed - Opened by stufield almost 3 years ago
- 1 comment
#12 - No detailed information about SomaLogic proteomics data
Issue -
State: closed - Opened by peng-gang almost 3 years ago
- 5 comments
Labels: documentation, question
#11 - Add lifting functionality for transforming SomaScan data between Assay versions
Issue -
State: closed - Opened by stufield almost 3 years ago
#10 - Update README file with RUO language
Issue -
State: closed - Opened by stufield almost 3 years ago
#9 - Read adat file < v4.0
Issue -
State: closed - Opened by andreagrioni almost 3 years ago
- 4 comments
Labels: question
#8 - Include function to load multiple ADAT files as a list via `read_adat()`
Issue -
State: closed - Opened by stufield almost 3 years ago
#7 - mutate_if dplyr function in ReadMe
Issue -
State: closed - Opened by wschwarzmann about 3 years ago
- 1 comment
#6 - Add unit tests for `pivotExpressionSet()`
Issue -
State: open - Opened by stufield about 3 years ago
#5 - Fix typo broken link to `adat2eSet()` in README.Rmd
Issue -
State: closed - Opened by stufield about 3 years ago
#4 - Add pkgdown and issues links to README
Issue -
State: closed - Opened by stufield about 3 years ago
- 2 comments
#3 - Upgrade to newest dependency packages and R v4.0.0
Issue -
State: closed - Opened by stufield over 3 years ago
- 1 comment
#2 - Add new function to parse SomaLogic Annotations file
Issue -
State: closed - Opened by stufield over 3 years ago
- 1 comment
#1 - column names as "EntrezGeneSymbol"
Issue -
State: closed - Opened by foocheung2 over 3 years ago
- 2 comments