Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / SomaLogic/SomaDataIO issues and pull requests

#74 - Silence `is_intact_attr()` signaling when called indirectly

Pull Request - State: closed - Opened by stufield 9 months ago - 1 comment

#73 - Simplify `tidyr::separate.soma_adat()` S3 method

Pull Request - State: closed - Opened by stufield 9 months ago - 1 comment

#72 - Tweak to S3 `tidyr::separate.soma_adat()`

Issue - State: closed - Opened by stufield 9 months ago

#70 - Issue with duplicated Target names when running t-test box plot code

Issue - State: open - Opened by barnacj 9 months ago - 2 comments
Labels: question, tech-support

#69 - Bump year 2024

Pull Request - State: closed - Opened by stufield 9 months ago - 1 comment

#68 - Bump year to 2024

Issue - State: closed - Opened by stufield 9 months ago

#67 - New `grouped_df` class support with `soma_adat` objects

Pull Request - State: open - Opened by stufield 9 months ago - 1 comment

#66 - Error when using dplyr::group_by()

Issue - State: open - Opened by laurapyle 9 months ago - 12 comments
Labels: enhancement, question

#65 - Further development of the pkgdown website

Pull Request - State: closed - Opened by stufield 10 months ago

#64 - Add new vignettes for pkgdown

Pull Request - State: closed - Opened by stufield 10 months ago - 1 comment

#63 - Standardize LICENSE.md file

Pull Request - State: closed - Opened by stufield about 1 year ago

#62 - Update _pkgdown.yml with new sysdata functions

Pull Request - State: closed - Opened by stufield about 1 year ago

#61 - Fix LICENSE syntax and update README

Pull Request - State: closed - Opened by stufield about 1 year ago

#60 - Remove sysdata.rda internals and replace with user-friendly files

Pull Request - State: closed - Opened by stufield about 1 year ago

#59 - Expose functions previously in `R/sysdata.rda`

Issue - State: closed - Opened by stufield about 1 year ago

#58 - Structured adat docs and links

Pull Request - State: closed - Opened by stufield about 1 year ago

#56 - SomaLogic data to PRIDE Archive

Issue - State: closed - Opened by ypriverol about 1 year ago - 2 comments
Labels: good first issue, question

#54 - Manual sync sysdata.rda

Pull Request - State: closed - Opened by stufield over 1 year ago - 1 comment

#53 - Cleaned up _pkgdown.yml

Pull Request - State: closed - Opened by stufield over 1 year ago

#52 - Bugfix write adat apply

Pull Request - State: closed - Opened by stufield over 1 year ago - 1 comment

#51 - ADAT writer breaks with a single analyte `soma_adat` object

Issue - State: closed - Opened by stufield over 1 year ago
Labels: bug

#50 - More fine tuned control of GHAs

Pull Request - State: closed - Opened by stufield over 1 year ago

#49 - Update pkgdown.yaml GitHub Action workflow trigger

Pull Request - State: closed - Opened by stufield over 1 year ago - 1 comment

#48 - Add anova vignette

Pull Request - State: closed - Opened by stufield over 1 year ago

#47 - Create vignette for ANOVA analysis of SomaScan

Issue - State: closed - Opened by stufield over 1 year ago

#46 - Add vignette for new command line merge tool

Pull Request - State: closed - Opened by stufield over 1 year ago

#45 - Create vignette on how to use the CLI merge tool

Issue - State: closed - Opened by stufield over 1 year ago

#44 - Simplify and coverage for getAnalyteInfo()

Pull Request - State: closed - Opened by stufield over 1 year ago

#43 - Unit test is seq format

Pull Request - State: closed - Opened by stufield over 1 year ago - 1 comment

#42 - Tweak vignette readme

Pull Request - State: closed - Opened by stufield over 1 year ago

#41 - Fix missing closing parens in SomaScanObjects.R

Pull Request - State: closed - Opened by stufield over 1 year ago - 1 comment

#40 - Error when using read_adat() + issue in setup script

Issue - State: closed - Opened by Hijinx725 over 1 year ago - 2 comments
Labels: bug

#39 - New pkgdown upgrades

Pull Request - State: closed - Opened by stufield over 1 year ago - 1 comment

#38 - Clean up redundancy in split vignettes

Pull Request - State: closed - Opened by stufield over 1 year ago

#37 - Add build-pkgdown branch to GHA

Pull Request - State: closed - Opened by stufield over 1 year ago

#36 - Add analysis vignettes from readme

Pull Request - State: closed - Opened by stufield over 1 year ago - 1 comment

#35 - Simplify README and move sample analyses into vignettes

Issue - State: closed - Opened by stufield over 1 year ago

#34 - Minor tweaks to unit tests for SeqIds

Pull Request - State: closed - Opened by stufield over 1 year ago

#33 - Release SomaDataIO 6.0.0 -> CRAN

Issue - State: closed - Opened by stufield over 1 year ago

#32 - Trim package size to conform to CRAN < 5MB restrictions

Issue - State: closed - Opened by stufield over 1 year ago

#31 - Add S3 `merge()` method for the `soma_adat` class

Issue - State: closed - Opened by stufield over 1 year ago - 1 comment

#30 - Volcano plot

Issue - State: closed - Opened by MoemenEltobgy over 1 year ago - 2 comments
Labels: question, tech-support

#29 - Flagged and Normal distribution

Issue - State: closed - Opened by MoemenEltobgy over 1 year ago - 2 comments
Labels: question, tech-support

#28 - Summary and relative abundance

Issue - State: closed - Opened by MoemenEltobgy almost 2 years ago - 3 comments
Labels: question, tech-support

#27 - Loading an adat

Issue - State: closed - Opened by MoemenEltobgy almost 2 years ago - 2 comments
Labels: question

#25 - Add Clinical Data Merging CLI tool

Issue - State: closed - Opened by stufield almost 2 years ago

#23 - Compatibility with R version 3.6.*

Issue - State: open - Opened by jmw86069 about 2 years ago - 4 comments
Labels: question

#22 - Conversion of data frame to .adat format and applying ANOVA

Issue - State: open - Opened by Manonanthini about 2 years ago - 9 comments
Labels: question

#21 - write_adat() should not open in 'append' mode

Issue - State: closed - Opened by stufield about 2 years ago
Labels: bug

#20 - SomaDataIO on CRAN / Bioconductor

Issue - State: closed - Opened by lassemaretty about 2 years ago - 10 comments
Labels: question

#19 - Migrate from `master` -> `main`

Issue - State: closed - Opened by stufield over 2 years ago - 1 comment

#18 - write_adat function not working, even on example data that is unaltered.

Issue - State: closed - Opened by aabarrera2 over 2 years ago - 13 comments
Labels: bug

#17 - Trouble Parsing ADAT File

Issue - State: closed - Opened by ruhinaik over 2 years ago - 3 comments
Labels: question

#16 - error in example code

Issue - State: closed - Opened by sbbmu over 2 years ago - 4 comments
Labels: bug, duplicate

#15 - Unable to write out .adat file

Issue - State: closed - Opened by bbodek over 2 years ago - 5 comments
Labels: bug

#14 - Release lifting code and tag version

Issue - State: closed - Opened by stufield almost 3 years ago

#13 - Update `example_data.adat` object sync with SomaLogic-Data repository

Issue - State: closed - Opened by stufield almost 3 years ago - 1 comment

#12 - No detailed information about SomaLogic proteomics data

Issue - State: closed - Opened by peng-gang almost 3 years ago - 5 comments
Labels: documentation, question

#10 - Update README file with RUO language

Issue - State: closed - Opened by stufield almost 3 years ago

#9 - Read adat file < v4.0

Issue - State: closed - Opened by andreagrioni almost 3 years ago - 4 comments
Labels: question

#7 - mutate_if dplyr function in ReadMe

Issue - State: closed - Opened by wschwarzmann about 3 years ago - 1 comment

#6 - Add unit tests for `pivotExpressionSet()`

Issue - State: open - Opened by stufield about 3 years ago

#5 - Fix typo broken link to `adat2eSet()` in README.Rmd

Issue - State: closed - Opened by stufield about 3 years ago

#4 - Add pkgdown and issues links to README

Issue - State: closed - Opened by stufield about 3 years ago - 2 comments

#3 - Upgrade to newest dependency packages and R v4.0.0

Issue - State: closed - Opened by stufield over 3 years ago - 1 comment

#2 - Add new function to parse SomaLogic Annotations file

Issue - State: closed - Opened by stufield over 3 years ago - 1 comment

#1 - column names as "EntrezGeneSymbol"

Issue - State: closed - Opened by foocheung2 over 3 years ago - 2 comments