Ecosyste.ms: Issues
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GitHub / ShobiStassen/PARC issues and pull requests
#46 - `requirements.txt` and `setup.py`
Pull Request -
State: open - Opened by ahill187 about 1 month ago
#45 - Input data types
Pull Request -
State: open - Opened by ahill187 about 1 month ago
#44 - Tests
Pull Request -
State: open - Opened by ahill187 about 1 month ago
#43 - Unnecessary copy of edgelist?
Issue -
State: open - Opened by Stein-ErikG about 1 month ago
- 1 comment
#42 - `small_pop` not found
Issue -
State: open - Opened by ahill187 about 2 months ago
#41 - Fix `small_community_size` bug
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#40 - Refactor `make_knn_struct`
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#39 - Factor out `prune_global`
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#38 - New argument `jac_threshold_type`
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#37 - Refactor `prune_local`
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#36 - Refactor `knngraph_full` -> `create_knn_graph`
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#35 - Factor out `get_leiden_partition`
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#34 - Factor out `compute_performance_metrics`
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#33 - Add docstrings and properties to the constructor
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#32 - Variable renaming
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#31 - `func_mode` -> `get_mode`
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#30 - Code cleanup
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#29 - Add logging
Pull Request -
State: open - Opened by ahill187 about 2 months ago
#28 - Refactor `prune_local`
Pull Request -
State: closed - Opened by ahill187 2 months ago
#27 - Update _parc.py
Pull Request -
State: closed - Opened by ShobiStassen 4 months ago
#26 - Fix simplicial set embedding bug
Pull Request -
State: closed - Opened by ahill187 7 months ago
- 1 comment
#25 - `run_umap_hnsw` doesn't work
Issue -
State: closed - Opened by ahill187 7 months ago
#24 - Minor bug in run_toobig_subPARC
Issue -
State: closed - Opened by santoshputta 11 months ago
#23 - Import of umap increases PARC import time
Issue -
State: open - Opened by JcGKitten over 1 year ago
- 1 comment
#22 - Hyperclustering with PARC
Issue -
State: open - Opened by peterpath over 1 year ago
- 1 comment
#21 - Questions on using PARC for identifying plasma cells
Issue -
State: open - Opened by nilaj-c about 2 years ago
- 1 comment
#20 - RStudio crashing when clustering a large dataset
Issue -
State: open - Opened by Stein-ErikG about 2 years ago
- 12 comments
#19 - Hello! I am getting AttributeError, when trying to import parc
Issue -
State: closed - Opened by quantumkisa over 2 years ago
- 2 comments
#18 - Python igraph
Issue -
State: closed - Opened by luglilab over 2 years ago
- 4 comments
#17 - Question on pruning big cluster
Issue -
State: closed - Opened by ivan-marroquin almost 3 years ago
- 2 comments
#16 - Error when running UMAP
Issue -
State: open - Opened by rjesud over 3 years ago
- 3 comments
#15 - About the true labels for calculating the F1 scores
Issue -
State: open - Opened by li000678 over 3 years ago
- 2 comments
#14 - Relaxation of leidenalg==0.7.0 requirement?
Issue -
State: closed - Opened by ajitjohnson almost 4 years ago
- 2 comments
#13 - Fixed Bug: pre-computed neighbors-graph and small clusters
Pull Request -
State: closed - Opened by tommycelsius over 4 years ago
#12 - Added class parameter for pre-computed nearest neighbor graph.
Pull Request -
State: closed - Opened by tommycelsius over 4 years ago
#11 - Tips for replicating the performance on the lung cell clustering
Issue -
State: closed - Opened by tom-b over 4 years ago
- 3 comments
#10 - any plan to release an R version of PARC?
Issue -
State: open - Opened by cirobotta over 4 years ago
- 4 comments
#9 - Controlling the number of clusters
Issue -
State: closed - Opened by ajitjohnson over 4 years ago
- 4 comments
#8 - Amazing work!
Issue -
State: open - Opened by SansMorel over 4 years ago
- 6 comments
#7 - Bugs in Example Usage 3
Issue -
State: closed - Opened by esimonds over 4 years ago
- 2 comments
#6 - Example Usage 2 has some code typos
Issue -
State: closed - Opened by esimonds over 4 years ago
- 2 comments
#5 - np.reshape error if too many edges are pruned
Issue -
State: closed - Opened by ezunder almost 5 years ago
- 1 comment
#4 - Add vertices explicitly during G_sim construction.
Pull Request -
State: closed - Opened by ezunder almost 5 years ago
#3 - pip install issue: Mac OS X and AWS Linux
Issue -
State: open - Opened by wyattmcdonnell almost 5 years ago
- 3 comments
#2 - Easy distance metric and thread usage
Pull Request -
State: closed - Opened by wyattmcdonnell almost 5 years ago
#1 - Add support for reproducible Leiden clustering
Pull Request -
State: closed - Opened by wyattmcdonnell almost 5 years ago