Ecosyste.ms: Issues

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GitHub / ShawHahnLab/vquest issues and pull requests

#38 - Release 0.0.10

Pull Request - State: closed - Opened by ressy over 2 years ago

#37 - Add FASTQ support

Pull Request - State: closed - Opened by ressy over 2 years ago

#36 - Fix usage example and imports

Pull Request - State: closed - Opened by ressy over 2 years ago

#35 - name 'layer_configs' is not defined

Issue - State: closed - Opened by chpiero over 2 years ago - 6 comments

#34 - Use HTTPS

Pull Request - State: closed - Opened by ressy about 3 years ago

#33 - HTTPS is needed now

Issue - State: closed - Opened by ressy about 3 years ago

#32 - Link to HighV-QUEST

Issue - State: open - Opened by ressy over 3 years ago
Labels: documentation

#31 - Release 0.0.9

Pull Request - State: closed - Opened by ressy over 3 years ago - 2 comments

#30 - Handle empty configs

Pull Request - State: closed - Opened by ressy over 3 years ago

#29 - Empty config file should be handled

Issue - State: closed - Opened by ressy over 3 years ago
Labels: bug

#28 - Make V-QUEST command-line option names consistent

Pull Request - State: closed - Opened by ressy over 3 years ago

#27 - Command-line options don't match case of actual V-QUEST options

Issue - State: closed - Opened by ressy over 3 years ago
Labels: bug

#26 - Cleanup and expand unit tests

Pull Request - State: closed - Opened by ressy over 3 years ago

#25 - Allow raw un-combined output

Pull Request - State: closed - Opened by ressy over 3 years ago

#24 - Add output directory option

Pull Request - State: closed - Opened by ressy over 3 years ago

#23 - Un-combined output should be available

Issue - State: closed - Opened by ressy over 3 years ago
Labels: enhancement

#22 - Download in a zip archive (xv_outputtype=1) should be supported

Issue - State: open - Opened by ressy over 3 years ago
Labels: enhancement

#21 - Output directory should be configurable

Issue - State: closed - Opened by ressy over 3 years ago
Labels: enhancement

#20 - Release 0.0.8

Pull Request - State: closed - Opened by ressy over 3 years ago

#19 - Fix batch submission of sequences for perfect multiples of 50

Pull Request - State: closed - Opened by ressy over 3 years ago

#17 - Release 0.0.7

Pull Request - State: closed - Opened by ressy almost 4 years ago

#16 - Fix data directory handling in package build and install

Pull Request - State: closed - Opened by ressy almost 4 years ago

#15 - Package install should not duplicate data directory in sys.prefix

Issue - State: closed - Opened by ressy almost 4 years ago - 1 comment
Labels: bug

#14 - Release 0.0.6

Pull Request - State: closed - Opened by ressy almost 4 years ago

#13 - Refactor package and fix dependency problem during install

Pull Request - State: closed - Opened by ressy almost 4 years ago

#12 - Catch-22 with dependencies in setup.py

Issue - State: closed - Opened by ressy almost 4 years ago
Labels: bug

#11 - Release 0.0.5

Pull Request - State: closed - Opened by ressy almost 4 years ago

#10 - Try running package on command line during automated testing

Pull Request - State: closed - Opened by ressy almost 4 years ago

#9 - Automated tests should include command-line program usage

Issue - State: closed - Opened by ressy almost 4 years ago

#8 - Improve description for "Your Selection" section used in help text

Pull Request - State: closed - Opened by ressy almost 4 years ago

#7 - Parse and report server-provided errors

Pull Request - State: closed - Opened by ressy almost 4 years ago

#6 - Reorganize tests as package

Pull Request - State: closed - Opened by ressy almost 4 years ago

#5 - Fix command-line argument parsing of integers for vquest options

Pull Request - State: closed - Opened by ressy almost 4 years ago

#4 - Command-line options from set of integers not parsed correctly

Issue - State: closed - Opened by ressy almost 4 years ago
Labels: bug

#3 - Errors received via HTML should be handled

Issue - State: closed - Opened by ressy almost 4 years ago

#2 - Command line help for main options is confusing

Issue - State: closed - Opened by ressy almost 4 years ago

#1 - AIRR alignment to FASTA feature

Pull Request - State: closed - Opened by ressy about 4 years ago