Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / SchlossLab/mikropml issues and pull requests
#345 - run_ml does not support "training_frac = 1.0" to get best hyperparameter value
Issue -
State: open - Opened by joannacolovas about 1 month ago
#343 - Preprocessing in run_ml?
Issue -
State: closed - Opened by pschloss 5 months ago
- 1 comment
Labels: wontfix
#340 - Fix roxygen package doc syntax
Pull Request -
State: closed - Opened by kelly-sovacool about 1 year ago
- 1 comment
#339 - Factor levels in outcome column are not preserved
Issue -
State: open - Opened by kelly-sovacool over 1 year ago
Labels: bug
#338 - Precision should be 1 when TP=1 and FP=0
Issue -
State: open - Opened by kelly-sovacool over 1 year ago
Labels: bug
#337 - Preserve factor levels in outcome column
Pull Request -
State: open - Opened by kelly-sovacool over 1 year ago
#336 - Added option to impute missing values during training
Pull Request -
State: open - Opened by megancoden over 1 year ago
- 4 comments
#335 - Generate docs for internal functions
Pull Request -
State: closed - Opened by kelly-sovacool over 1 year ago
- 1 comment
#334 - New vignette for visualizing performance and feature importance
Issue -
State: open - Opened by kelly-sovacool over 1 year ago
Labels: documentation
#333 - Calculate balanced precision
Pull Request -
State: closed - Opened by kelly-sovacool over 1 year ago
- 1 comment
#332 - Link to GitHub Discussions for help
Pull Request -
State: closed - Opened by kelly-sovacool over 1 year ago
Labels: documentation
#330 - Calculate the area under the balanced precision-recall curve (AUBPRC)
Issue -
State: closed - Opened by kelly-sovacool over 1 year ago
Labels: feature, good first issue
#329 - Create `bootstrap_performance()` for single train/test splits
Pull Request -
State: closed - Opened by kelly-sovacool over 1 year ago
#328 - roxygen2 docs: switch `@noRd` to `@keywords internal` for all internal functions
Issue -
State: closed - Opened by kelly-sovacool over 1 year ago
Labels: documentation, good first issue
#327 - Switch from {future.apply} to {furrr} where possible
Issue -
State: open - Opened by kelly-sovacool over 1 year ago
- 1 comment
#326 - Report confidence interval for permutation feature importance
Pull Request -
State: closed - Opened by kelly-sovacool over 1 year ago
- 1 comment
#325 - Create function to bootstrap the test set to get a confidence interval for performance
Issue -
State: closed - Opened by kelly-sovacool over 1 year ago
Labels: feature
#324 - Report confidence interval for permutation feature importance
Issue -
State: closed - Opened by kelly-sovacool over 1 year ago
Labels: feature
#323 - Improve description of `run_ml()` and its args
Pull Request -
State: closed - Opened by kelly-sovacool over 1 year ago
#322 - Release 1.5.0
Pull Request -
State: closed - Opened by kelly-sovacool over 1 year ago
- 1 comment
#321 - Plot ROC & PRC curves
Pull Request -
State: closed - Opened by kelly-sovacool over 1 year ago
- 1 comment
#320 - Use get_partition_indices() in case weights example
Pull Request -
State: closed - Opened by kelly-sovacool over 1 year ago
- 1 comment
#319 - Extracting weights from 100 iterations and from random random forset model
Issue -
State: closed - Opened by Hesham999666 almost 2 years ago
- 1 comment
#314 - Fix feature importance plot
Pull Request -
State: closed - Opened by kelly-sovacool almost 2 years ago
- 3 comments
Labels: bug, documentation
#313 - NaN as character causes some problems
Issue -
State: closed - Opened by sskoldas almost 2 years ago
- 3 comments
#310 - Show example feature importance plot
Pull Request -
State: closed - Opened by kelly-sovacool almost 2 years ago
#308 - meta-analysis using mikropml?
Issue -
State: closed - Opened by marwa38 almost 2 years ago
#306 - Support parRF using rf hyperparams
Pull Request -
State: closed - Opened by kelly-sovacool almost 2 years ago
#305 - Use hyperparams from `rf` for `parRF`
Issue -
State: closed - Opened by kelly-sovacool almost 2 years ago
Labels: feature
#304 - Forward extra arguments to `caret::train()`
Pull Request -
State: closed - Opened by kelly-sovacool almost 2 years ago
- 1 comment
#303 - Test that the plot prints without warnings
Pull Request -
State: closed - Opened by kelly-sovacool almost 2 years ago
#302 - Refactor `select_apply()`
Issue -
State: open - Opened by kelly-sovacool almost 2 years ago
#301 - Impute missing values after the train/test split
Issue -
State: open - Opened by kelly-sovacool almost 2 years ago
Labels: feature
#300 - Create unit test for plot_model_performance()
Pull Request -
State: closed - Opened by kelly-sovacool about 2 years ago
#298 - Update tests to use the 3rd edition of testthat
Pull Request -
State: closed - Opened by kelly-sovacool over 2 years ago
- 4 comments
#297 - Prepare to release v1.3.0
Pull Request -
State: closed - Opened by kelly-sovacool over 2 years ago
- 1 comment
#296 - use which run_ml() output to plot ROC curve?
Issue -
State: closed - Opened by zhq90 over 2 years ago
- 2 comments
#295 - Create function to compare models with a permutation test
Pull Request -
State: closed - Opened by courtneyarmour over 2 years ago
- 1 comment
#294 - classification of new (and outcome unknown) samples
Issue -
State: closed - Opened by fairquestion over 2 years ago
- 1 comment
#293 - Improve feature importance examples
Pull Request -
State: closed - Opened by kelly-sovacool over 2 years ago
#292 - Depend on R >= 4.1.0 because randomForest does now
Pull Request -
State: closed - Opened by kelly-sovacool over 2 years ago
#291 - Use cv_times for repeats in trainControl
Pull Request -
State: closed - Opened by kelly-sovacool over 2 years ago
#290 - Fix no-long-double test failure
Pull Request -
State: closed - Opened by kelly-sovacool over 2 years ago
#289 - Prepare to release v1.2.1
Pull Request -
State: closed - Opened by kelly-sovacool over 2 years ago
- 1 comment
#288 - Report p-values in the feature importance dataframe
Pull Request -
State: closed - Opened by kelly-sovacool almost 3 years ago
- 1 comment
#287 - Report p-values for permutation importance
Issue -
State: closed - Opened by kelly-sovacool almost 3 years ago
Labels: feature
#286 - Use tidy github documents
Pull Request -
State: closed - Opened by kelly-sovacool almost 3 years ago
#285 - Allow kfold to be larger than the number of groups in the training set
Pull Request -
State: closed - Opened by kelly-sovacool almost 3 years ago
- 1 comment
#283 - Warning message about '%dorng%' vs '%dopar%' when run in parallel
Issue -
State: closed - Opened by dansmith01 almost 3 years ago
- 2 comments
#282 - Improve docs for the training_frac & groups options
Pull Request -
State: closed - Opened by kelly-sovacool almost 3 years ago
- 2 comments
#281 - Create group_partitions option & allow direct control over train/test split
Pull Request -
State: closed - Opened by kelly-sovacool almost 3 years ago
- 1 comment
#278 - Add parameter for custom cross-validation schemes
Pull Request -
State: closed - Opened by kelly-sovacool about 3 years ago
- 1 comment
#277 - Fix typo: svmRadial uses a radial kernel, not linear
Pull Request -
State: closed - Opened by kelly-sovacool about 3 years ago
#276 - Refactor group_correlated_features()
Pull Request -
State: closed - Opened by kelly-sovacool about 3 years ago
- 2 comments
#275 - Rename branch 'master' to 'main'
Pull Request -
State: closed - Opened by kelly-sovacool about 3 years ago
#274 - find_feature_importance fails for multiclass data
Issue -
State: closed - Opened by alexmsalmeida about 3 years ago
- 6 comments
#273 - Don't convert outcome vectors to characters in preprocess_data()
Pull Request -
State: closed - Opened by kelly-sovacool about 3 years ago
#272 - Conversion of numeric outcomes to character error
Issue -
State: closed - Opened by ecmaggioncalda about 3 years ago
- 1 comment
Labels: bug
#271 - Providing case weights
Issue -
State: closed - Opened by funnell about 3 years ago
- 4 comments
Labels: feature
#270 - Link to @pschloss' ML playlist on YouTube
Pull Request -
State: closed - Opened by kelly-sovacool about 3 years ago
#269 - grouped features are not always in the same order
Issue -
State: closed - Opened by ecmaggioncalda about 3 years ago
Labels: bug, reprex
#268 - Need function to compare models
Issue -
State: closed - Opened by pschloss about 3 years ago
- 5 comments
Labels: feature
#267 - Add option for correlation method
Pull Request -
State: closed - Opened by courtneyarmour over 3 years ago
- 2 comments
#266 - update documentation
Pull Request -
State: closed - Opened by courtneyarmour over 3 years ago
- 1 comment
#265 - update get_corr_feats() to have correlation method option
Issue -
State: closed - Opened by courtneyarmour over 3 years ago
- 1 comment
Labels: feature
#264 - group_correlated_features() sometimes appends extra columns in R 3.6.1
Issue -
State: closed - Opened by kelly-sovacool over 3 years ago
Labels: bug
#263 - Correlation threshold parameter
Issue -
State: closed - Opened by kelly-sovacool over 3 years ago
- 1 comment
Labels: feature
#262 - Add ROC curve example code to docs
Issue -
State: closed - Opened by kelly-sovacool over 3 years ago
- 3 comments
Labels: documentation, feature, good first issue
#261 - Update citation with JOSS details
Pull Request -
State: closed - Opened by kelly-sovacool over 3 years ago
#260 - Acknowledge URSSI
Pull Request -
State: closed - Opened by kelly-sovacool over 3 years ago
Labels: JOSS-paper
#259 - Review responses
Pull Request -
State: closed - Opened by zenalapp over 3 years ago
- 5 comments
Labels: JOSS-paper
#258 - Test that get_outcome_type() errors when expected
Pull Request -
State: closed - Opened by kelly-sovacool over 3 years ago
#257 - Report progress in long-running functions
Pull Request -
State: closed - Opened by kelly-sovacool over 3 years ago
- 1 comment
#256 - Change "run ML" phrases to more appropriate ones in vignettes
Pull Request -
State: closed - Opened by BTopcuoglu over 3 years ago
- 4 comments
#255 - Thank Nick
Pull Request -
State: closed - Opened by zenalapp over 3 years ago
#254 - Add multi-outcome unit test & note multi-label limitation
Pull Request -
State: closed - Opened by zenalapp over 3 years ago
- 2 comments
#253 - Use the phrase "model training" rather than "ML" where appropriate
Issue -
State: closed - Opened by kelly-sovacool over 3 years ago
Labels: documentation, JOSS-paper
#252 - Test multi-outcome datasets
Issue -
State: closed - Opened by kelly-sovacool over 3 years ago
- 2 comments
Labels: bug, JOSS-paper
#251 - Refactor run_ml() API for future expandability
Issue -
State: closed - Opened by kelly-sovacool over 3 years ago
- 1 comment
Labels: wontfix, JOSS-paper
#250 - Report live updates of metrics during training
Issue -
State: closed - Opened by kelly-sovacool over 3 years ago
- 1 comment
Labels: feature, wontfix, JOSS-paper
#249 - Implement progress bar for long-running functions
Issue -
State: closed - Opened by kelly-sovacool over 3 years ago
- 3 comments
Labels: feature, JOSS-paper
#248 - Add the logo
Pull Request -
State: closed - Opened by kelly-sovacool over 3 years ago
#247 - Replace spaces in outcome column with underscores
Pull Request -
State: closed - Opened by kelly-sovacool over 3 years ago
#246 - Support custom groups for feature importance
Pull Request -
State: closed - Opened by kelly-sovacool over 3 years ago
- 1 comment
#245 - Support custom groups of features for permutation importance
Issue -
State: closed - Opened by kelly-sovacool over 3 years ago
Labels: feature
#244 - Class strings cannot contain spaces in the outcome columns [JOSS review]
Issue -
State: closed - Opened by JonnyTran over 3 years ago
- 2 comments
Labels: bug, JOSS-paper
#243 - decision tree error
Issue -
State: closed - Opened by ebechtold over 3 years ago
- 4 comments
#242 - Update from model formula to x,y notation in train function
Issue -
State: closed - Opened by BTopcuoglu over 3 years ago
Labels: feature
#241 - Training Webinar
Issue -
State: closed - Opened by SWi1 almost 4 years ago
- 2 comments
#240 - Add preprocess option to remove features that appear in N rows or fewer
Pull Request -
State: closed - Opened by kelly-sovacool almost 4 years ago
- 1 comment
#239 - Use \dontrun{} instead of \donttest{} for Roxygen examples
Pull Request -
State: closed - Opened by kelly-sovacool almost 4 years ago
#238 - Clarify meaning of perf_metric_diff
Pull Request -
State: closed - Opened by kelly-sovacool almost 4 years ago
#237 - Check r-oldrel (currently R 3.6.2)
Pull Request -
State: closed - Opened by kelly-sovacool almost 4 years ago
- 1 comment
#236 - Improve permutation importance calculation
Pull Request -
State: closed - Opened by kelly-sovacool almost 4 years ago
- 1 comment
#235 - Show how to do feature importance after run_ml() if you skipped it initially
Issue -
State: closed - Opened by kelly-sovacool almost 4 years ago
- 1 comment
Labels: documentation
#234 - Better explain the groups param & batch effects in the intro vignette
Issue -
State: open - Opened by kelly-sovacool almost 4 years ago
Labels: documentation, good first issue
#233 - Note --max-ppsize for large datasets in preprocess vignette
Issue -
State: open - Opened by kelly-sovacool almost 4 years ago
Labels: documentation, good first issue
#232 - Incorporate documentation edits from Schloss Lab meeting
Pull Request -
State: closed - Opened by kelly-sovacool almost 4 years ago
- 1 comment
#231 - Intro vignette proof read
Issue -
State: closed - Opened by pschloss almost 4 years ago
Labels: documentation
#230 - Edit hyperparameter tuning vignette
Issue -
State: closed - Opened by NLesniak almost 4 years ago
- 3 comments
Labels: documentation