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GitHub / Sage-Bionetworks-Workflows/py-orca issues and pull requests

#45 - [IBCDPE-1111] Upgrade airflow version

Pull Request - State: closed - Opened by BryanFauble 4 months ago - 3 comments

#44 - Adds `gh_token` to KeepAlive workflow

Pull Request - State: closed - Opened by BWMac 8 months ago - 1 comment

#43 - cleans readme for pre-commit

Pull Request - State: closed - Opened by BWMac 8 months ago - 1 comment

#42 - [ORCA-318] Add instructions on setting up env on EC2

Pull Request - State: closed - Opened by danlu1 10 months ago - 2 comments

#41 - [IBCDPE-700] Update `demo.py` to use `nf-synapse`:`NF_SYNINDEX`

Pull Request - State: closed - Opened by BWMac 10 months ago - 2 comments

#40 - [ORCA-308] Bumps `synapseclient` and `fs-synapse` versions & Removes `pipenv` files

Pull Request - State: closed - Opened by BWMac 11 months ago - 2 comments

#39 - [IBCDPE-848] Query for `id` only

Pull Request - State: closed - Opened by jaymedina 11 months ago - 3 comments
Labels: enhancement

#38 - Updates Contributing Docs

Pull Request - State: closed - Opened by BWMac 12 months ago - 2 comments

#37 - [ORCA-306] Get and update Challenge submissions

Pull Request - State: closed - Opened by jaymedina 12 months ago - 6 comments
Labels: enhancement

#36 - [IBCDPE-749] Clarify points in documentation

Pull Request - State: closed - Opened by jaymedina about 1 year ago - 4 comments

#35 - [ORCA-297] Fixing tutorial demo (`demo.py` and documentation)

Pull Request - State: closed - Opened by jaymedina about 1 year ago - 3 comments
Labels: bug

#34 - Documentation Updates

Pull Request - State: closed - Opened by jaymedina about 1 year ago - 2 comments

#33 - Add code owners and update authors

Pull Request - State: closed - Opened by thomasyu888 about 1 year ago - 1 comment

#32 - CI testing

Pull Request - State: closed - Opened by BWMac about 1 year ago - 3 comments

#31 - [ORCA-294] Fix `tox` implementation in CI pipeline

Pull Request - State: closed - Opened by BWMac about 1 year ago - 3 comments

#30 - Correct pipfile and add readme note

Pull Request - State: closed - Opened by BryanFauble over 1 year ago - 2 comments

#29 - [IBCDPE-691] Adds Ability to Retrieve Workflow Task Logs from Tower

Pull Request - State: closed - Opened by BWMac over 1 year ago - 3 comments

#28 - [ORCA-283] CI Publish Bug Fix

Pull Request - State: closed - Opened by BWMac over 1 year ago - 3 comments

#27 - [ORCA-282] Adds "Keep Alive" CI Step

Pull Request - State: closed - Opened by BWMac over 1 year ago - 3 comments

#26 - [ORCA-280] Adds Support for Nextflow Entrypoints in `LaunchInfo`

Pull Request - State: closed - Opened by BWMac over 1 year ago - 3 comments

#25 - Improve `.env.example` template

Pull Request - State: closed - Opened by thomasyu888 over 1 year ago - 1 comment

#24 - [ORCA-209] Monitor Submission View

Pull Request - State: closed - Opened by BWMac over 1 year ago - 3 comments

#23 - [WORKFLOWS-220] Create `py-orca` demonstration script

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 4 comments

#22 - [ORCA-229] Implement `monitor_workflow()` for Tower

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 2 comments

#21 - [ORCA-228] Refactor workflow/task status as dataclasses

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 1 comment

#20 - [ORCA-208] Extend all base classes to support Synapse service

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 3 comments

#19 - [ORCA-217] Improve usability of Nextflow Tower service

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 1 comment

#18 - [ORCA-210] Add support for resuming workflows in NextflowTowerOps

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 2 comments

#17 - [WORKFLOWS-528] Allow `LaunchInfo` values to be missing

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 2 comments

#16 - [ORCA-164] adds `get_workflow` and `get_workflow_status` methods to ops

Pull Request - State: closed - Opened by BWMac almost 2 years ago - 6 comments

#15 - [ORCA-163] Implement `launch_workflow()` and `LaunchInfo` dataclass

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 2 comments

#14 - [ORCA-155] Adding tests to base tower service class

Pull Request - State: closed - Opened by rxu17 almost 2 years ago - 3 comments

#13 - [ORCA-155] Implement basic Nextflow Tower service

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 4 comments

#12 - [ORCA-155] Implement basic Nextflow Tower service

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago

#11 - [ORCA-154] Migrate config-related code to `BaseConfig` and improve docstrings

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 1 comment

#10 - [ORCA-153] Create base class for hooks

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 1 comment

#9 - [ORCA-152] Create base class for ops

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 1 comment

#8 - [ORCA-151] Create base class for client factories

Pull Request - State: closed - Opened by BrunoGrandePhD almost 2 years ago - 1 comment

#7 - Fix inconsistent package name

Pull Request - State: closed - Opened by BrunoGrandePhD about 2 years ago - 2 comments

#6 - [ORCA-134] Update "orca" based on Airflow testing

Pull Request - State: closed - Opened by BrunoGrandePhD about 2 years ago - 1 comment

#5 - [ORCA-133] Configure `orca` as an Airflow provider package

Pull Request - State: closed - Opened by BrunoGrandePhD about 2 years ago - 1 comment

#4 - [ORCA-131] Change "Tasks" suffix to "Ops" to avoid confusion

Pull Request - State: closed - Opened by BrunoGrandePhD about 2 years ago - 1 comment

#3 - [ORCA-130] Implement basic `SevenBridgesTasks` methods for task monitoring

Pull Request - State: closed - Opened by BrunoGrandePhD about 2 years ago - 2 comments

#2 - [ORCA-128] Design an Airflow-friendly structure for client and tasks code

Pull Request - State: closed - Opened by BrunoGrandePhD about 2 years ago - 3 comments

#1 - [ORCA-129] Create Python package structure based on `py-dcqc`

Pull Request - State: closed - Opened by BrunoGrandePhD about 2 years ago - 1 comment