SafetyGraphics/nep-explorer issues and pull requests

#127 - Update DESCRIPTION

Pull Request - State: closed - Opened by pburnsdata 8 months ago

#126 - Move to R!

Pull Request - State: closed - Opened by pburnsdata 8 months ago - 1 comment

#125 - How do we handle outliers?

Issue - State: open - Opened by pburnsdata 9 months ago

#124 - Jandeska updates

Pull Request - State: closed - Opened by pburnsdata 9 months ago - 1 comment

#123 - Incorporate Dr. Jandeska's feedback

Issue - State: open - Opened by pburnsdata 9 months ago

#122 - Integrate with `{safetyGraphics}` and add support for multiple data domains.

Issue - State: open - Opened by samussiah 11 months ago

#121 - DRAFT: Added Data Merge Step With 3 Domains

Pull Request - State: closed - Opened by pburnsdata about 1 year ago - 2 comments

#120 - DRAFT: Return Patient ID on Click

Pull Request - State: closed - Opened by pburnsdata about 1 year ago - 1 comment

#119 - Can we get a data storage four our working group...

Issue - State: open - Opened by pburnsdata about 1 year ago

#118 - Test out SG app + Patient Profiles + Clicking Patient

Issue - State: open - Opened by pburnsdata about 1 year ago

#117 - Adopt SafetyGraphics Visual Style Guide

Issue - State: open - Opened by pburnsdata over 1 year ago

#116 - Reduce Hideousness and evaluate colorblindness

Issue - State: open - Opened by pburnsdata over 1 year ago - 1 comment

#115 - Create Unit test for the creatinine (KDIGO derivation) data function

Issue - State: open - Opened by pburnsdata over 1 year ago

#114 - Split into LB, DM, VS. Names changed to ADLB, ADSL and ADVS to match …

Pull Request - State: closed - Opened by lgakava over 1 year ago - 1 comment

#113 - Split up adbds into three datasets/domains

Issue - State: closed - Opened by pburnsdata over 1 year ago

#112 - Replace References throughout the app

Issue - State: open - Opened by pburnsdata over 1 year ago - 1 comment

#111 - Add filter for Weeks and Study Days

Issue - State: open - Opened by pburnsdata over 1 year ago

#110 - Bump minimist from 1.2.5 to 1.2.8

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#109 - Bump json5 from 2.1.1 to 2.2.3

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#108 - Add BUN/creatinine Chart

Issue - State: open - Opened by pburnsdata over 1 year ago

#107 - Add data merge of domains to nep explorer server module

Issue - State: open - Opened by pburnsdata over 1 year ago

#106 - Add Gapminder Animation and handle missing lab params

Pull Request - State: closed - Opened by pburnsdata over 1 year ago

#105 - Highlight relevant cells of table when click on scatterplot

Issue - State: open - Opened by pburnsdata over 1 year ago
Labels: enhancement

#104 - Add Gapminder Functionality to view points in scatterplot at certain timepoint

Issue - State: closed - Opened by pburnsdata over 1 year ago
Labels: enhancement

#103 - cr8 sumdata fcn

Pull Request - State: closed - Opened by jwoolfolk over 1 year ago - 2 comments

#102 - switch out albumin for normalized albumin

Pull Request - State: closed - Opened by pburnsdata over 1 year ago

#101 - Move to SafetyCharts Dataset

Issue - State: open - Opened by pburnsdata over 1 year ago
Labels: enhancement

#100 - Add HTML export

Issue - State: open - Opened by pburnsdata over 1 year ago - 1 comment

#99 - Return Patient ID upon clicking on a circle in scatterplot for patient profiles

Issue - State: open - Opened by pburnsdata over 1 year ago - 1 comment
Labels: enhancement

#98 - Pass settings object and replace hardcoded column references in Patient Profile Module

Issue - State: closed - Opened by pburnsdata over 1 year ago
Labels: enhancement

#97 - use settings object instead of renaming columns, following volcanoplo…

Pull Request - State: closed - Opened by pburnsdata over 1 year ago - 1 comment

#96 - Follow volcanoplot and pass settings object around instead of renaming columns in Scatterplot Module

Issue - State: closed - Opened by pburnsdata over 1 year ago
Labels: enhancement

#95 - Generalize Normalized Albumin Chart

Issue - State: closed - Opened by pburnsdata over 1 year ago
Labels: enhancement

#94 - Update package to use workflows, lint package

Pull Request - State: closed - Opened by elimillera over 1 year ago - 2 comments

#93 - Create pretty readme with code example

Issue - State: open - Opened by pburnsdata over 1 year ago
Labels: documentation

#92 - Think about moving to standard domains

Issue - State: open - Opened by pburnsdata over 1 year ago - 1 comment
Labels: spike

#91 - Check the summarization and move into separate function

Issue - State: open - Opened by pburnsdata over 1 year ago - 2 comments
Labels: enhancement

#90 - Add Documentation of Data Assumptions

Issue - State: open - Opened by pburnsdata over 1 year ago
Labels: documentation

#89 - Spike: Think Through issues around Units

Issue - State: open - Opened by pburnsdata over 1 year ago
Labels: spike

#88 - If Patient Profile Lab Parameters are not specified in settings object then Handle Appropriately

Issue - State: open - Opened by pburnsdata over 1 year ago
Labels: enhancement

#87 - Document functions

Pull Request - State: closed - Opened by pburnsdata over 1 year ago

#86 - Determine how to handle the large number of labs used in patient profile line charts

Issue - State: closed - Opened by pburnsdata over 1 year ago - 1 comment

#85 - Create app function

Pull Request - State: closed - Opened by pburnsdata over 1 year ago

#84 - Create Nep Explorer App Function

Issue - State: closed - Opened by pburnsdata over 1 year ago
Labels: enhancement

#83 - Set up Custom Domain

Issue - State: closed - Opened by pburnsdata over 1 year ago - 1 comment
Labels: enhancement

#82 - Patient on click

Pull Request - State: closed - Opened by pburnsdata over 1 year ago

#81 - resolve #80 and simplify aesthetic calculations for scatterplot. remo…

Pull Request - State: closed - Opened by pburnsdata almost 2 years ago

#80 - Fix colors in scatterplot

Issue - State: closed - Opened by pburnsdata almost 2 years ago
Labels: bug

#79 - Add roxyen comments to functions/modules in /R

Issue - State: closed - Opened by pburnsdata almost 2 years ago
Labels: documentation

#78 - In Progress: initial draft of summary table calculations and formatting

Pull Request - State: closed - Opened by pburnsdata almost 2 years ago

#77 - Add KDIGO/Delta Creatinine Summary table below Scatterplot

Issue - State: closed - Opened by pburnsdata about 2 years ago - 1 comment
Labels: enhancement

#76 - Change calculation to use Baseline from SafetyGraphics object

Issue - State: open - Opened by pburnsdata about 2 years ago
Labels: enhancement

#75 - Add Controls

Issue - State: open - Opened by pburnsdata about 2 years ago
Labels: enhancement

#74 - Add filters

Issue - State: open - Opened by pburnsdata about 2 years ago - 2 comments
Labels: enhancement

#73 - Ensure that nep explorer supports SafetyGraphics code down download

Issue - State: closed - Opened by pburnsdata about 2 years ago - 1 comment
Labels: enhancement

#72 - Turn into an R Package and investigate checks etc

Issue - State: closed - Opened by pburnsdata about 2 years ago - 1 comment
Labels: enhancement

#71 - Update patient profile module based on click in scatter plot module

Issue - State: closed - Opened by pburnsdata about 2 years ago
Labels: enhancement

#70 - Support using Nep Explorer standalone (without SafetyGraphics)

Issue - State: closed - Opened by pburnsdata about 2 years ago - 1 comment
Labels: enhancement

#69 - Support reading from SafetyGraphics Settings object

Issue - State: open - Opened by pburnsdata about 2 years ago
Labels: enhancement

#68 - Add eGFR calculation function

Issue - State: open - Opened by pburnsdata about 2 years ago
Labels: enhancement

#67 - Vital signs in LABS domain or in separate VS domain?

Issue - State: open - Opened by pburnsdata about 2 years ago
Labels: spike

#66 - merge my code in with lovemores and move files to folders

Pull Request - State: closed - Opened by pburnsdata about 2 years ago

#65 - Scatter plot

Pull Request - State: closed - Opened by pburnsdata about 2 years ago

#64 - Add yaml file and Module to include draft nep-explorer to SafetyGraph…

Pull Request - State: closed - Opened by pburnsdata about 2 years ago

#63 - Time series

Pull Request - State: closed - Opened by pburnsdata about 2 years ago

#62 - Renal documents

Issue - State: open - Opened by JimBuchanan over 2 years ago

#61 - Bump path-parse from 1.0.6 to 1.0.7

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#60 - Bump lodash from 4.17.15 to 4.17.21

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#59 - Bump lodash from 4.17.15 to 4.17.19

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#58 - Panel scatter plot.

Issue - State: open - Opened by samussiah over 4 years ago

#57 - Add listing of participants on row click in KDIGO table.

Issue - State: open - Opened by samussiah over 4 years ago

#56 - Add RIFLE scatter plot.

Issue - State: open - Opened by samussiah over 4 years ago

#55 - Add BUN/creatinine ratio time series chart.

Issue - State: open - Opened by samussiah over 4 years ago

#54 - Add toggle between visit window calculation and change from baseline.

Issue - State: closed - Opened by samussiah over 4 years ago - 1 comment

#53 - Remove point fill and use point fill for something else.

Issue - State: open - Opened by samussiah over 4 years ago

#52 - Reevaluate hysteresis plot.

Issue - State: open - Opened by samussiah over 4 years ago

#51 - Add additional data guidelines section for what the derived data should look like.

Issue - State: open - Opened by samussiah over 4 years ago

#50 - Update configuration and data guidelines wikis.

Issue - State: open - Opened by samussiah over 4 years ago

#49 - Nephrotoxicity Explorer v0.9.0

Pull Request - State: closed - Opened by samussiah over 4 years ago

#48 - Sort KDIGO table in descending order.

Issue - State: closed - Opened by samussiah over 4 years ago

#47 - Add additional row to the KDIGO table for participants without two or more results inside the visit window.

Issue - State: closed - Opened by samussiah over 4 years ago

#46 - Add note under visit window control that displays the number of participants removed.

Issue - State: closed - Opened by samussiah over 4 years ago

#45 - Add schedule of events table with median study days.

Issue - State: open - Opened by samussiah over 4 years ago

#44 - Add toggle between maximal change and change from baseline.

Issue - State: open - Opened by samussiah over 4 years ago

#43 - Add footnote when visit window is larger than KDIGO criteria visit window.

Issue - State: open - Opened by samussiah over 4 years ago

#42 - Add hysteresis plot points to the voronoi mouse over diagram.

Issue - State: closed - Opened by samussiah over 4 years ago

#41 - Update tooltips to identify from which visit window the maximal change is found.

Issue - State: closed - Opened by samussiah over 4 years ago

#40 - When calculating maximal value, should the x-axis measure determine the visit window?

Issue - State: open - Opened by samussiah over 4 years ago - 2 comments

#39 - Replace fold change with percent change.

Issue - State: closed - Opened by samussiah over 4 years ago - 1 comment

#38 - Add a control for maximum time between visits in which to calculate maximal change.

Issue - State: closed - Opened by samussiah over 4 years ago - 1 comment

#37 - Calculate maximal change between visits.

Issue - State: closed - Opened by samussiah over 4 years ago - 1 comment

#36 - hysteresis plot issue

Issue - State: open - Opened by zskrivan over 4 years ago - 1 comment

#35 - Show conversion between fold and percent change on axis tick mouseove

Issue - State: open - Opened by jwildfire over 4 years ago - 1 comment

#34 - Add voronoi diagram underlay.

Issue - State: closed - Opened by samussiah over 4 years ago

#33 - Stick to fold change instead of percent change.

Issue - State: closed - Opened by samussiah over 4 years ago

#32 - Add a participant dropdown control.

Issue - State: open - Opened by samussiah over 4 years ago

#31 - If selected participant isn't a part of the current subset via the filters, detach participant.

Issue - State: closed - Opened by samussiah over 4 years ago

GitHub / SafetyGraphics/nep-explorer issues and pull requests