Ecosyste.ms: Issues
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GitHub / STAR-Fusion/STAR-Fusion issues and pull requests
#370 - Compatibility of STAR-Fusion with STAR
Issue -
State: closed - Opened by katjur01 about 1 year ago
- 1 comment
#369 - Error with FusionInspector validate
Issue -
State: open - Opened by pirateyoho about 1 year ago
- 6 comments
#368 - exit 0 for --help and --show_full_usage_info
Pull Request -
State: closed - Opened by fizwit about 1 year ago
#367 - Is there a concept of VAF corresponding to dna-seq?
Issue -
State: open - Opened by user-tq about 1 year ago
- 1 comment
#366 - Request for simulated fusion transcripts sequences
Issue -
State: closed - Opened by acloop62hz about 1 year ago
- 6 comments
#365 - BCL2:IGH fusion not reported
Issue -
State: open - Opened by asaki1986 about 1 year ago
- 8 comments
#364 - conda install v1.12.0 has no result
Issue -
State: open - Opened by qquuzhao over 1 year ago
- 1 comment
#363 - Error in running --denovo_reconstruct
Issue -
State: open - Opened by YimingLiu000 over 1 year ago
- 5 comments
#362 - EGFR-SEPTIN14 fusion misidentified as EGFR--AL627309.1
Issue -
State: closed - Opened by dshafranskaya over 1 year ago
- 3 comments
#361 - Star-Fusion with Drosophila Genome
Issue -
State: open - Opened by cellmem over 1 year ago
- 6 comments
#360 - ultima genomics version of STAR-Fusion
Issue -
State: open - Opened by williambrandler over 1 year ago
- 4 comments
#359 - What is 'leftbreakdinuc' in star-fusion output?
Issue -
State: closed - Opened by EvaPang2022 over 1 year ago
- 2 comments
#358 - Does this software work with WES data?
Issue -
State: closed - Opened by jingydz over 1 year ago
- 2 comments
#357 - EXITING: different motifs for the same junction
Issue -
State: open - Opened by Coaxecva over 1 year ago
- 3 comments
#356 - FISH detected fusion not detected by STAR-Fusion
Issue -
State: closed - Opened by asaki1986 over 1 year ago
- 7 comments
#355 - Bioconda recipe bakes incorrect perl script path
Issue -
State: open - Opened by ScottNortonPhD over 1 year ago
- 4 comments
#354 - Is there any way to transform the star-fusion tsv results into bedpe files?
Issue -
State: open - Opened by KevinZhou-hub over 1 year ago
- 4 comments
#353 - Error, file: Chimeric.out.junction doesn't have expected formatting.
Issue -
State: open - Opened by rpauly over 1 year ago
- 8 comments
#352 - Pipeline stuck in the perl steps
Issue -
State: open - Opened by sxz-ivan over 1 year ago
- 1 comment
#351 - How to calculate VAF through star-fusion`s result?
Issue -
State: open - Opened by dfc-1931475 almost 2 years ago
- 1 comment
#350 - Old version v1.5 filter got different output from 2 runs
Issue -
State: open - Opened by Wan-Yifei almost 2 years ago
- 8 comments
#349 - Strange annotation of FUS-DDIT3 fusion using GRCh38_gencode_v37_CTAT_lib_Mar012021
Issue -
State: open - Opened by dshafranskaya almost 2 years ago
- 1 comment
#348 - tmp files remain after run
Issue -
State: closed - Opened by hbeale almost 2 years ago
- 4 comments
#347 - More number of fusions detected when using star-fusion v1.11.1 compared to star-fusion 1.10.1
Issue -
State: closed - Opened by EvaPang2022 almost 2 years ago
- 10 comments
#346 - Non-Fatal Error in log, should I worry?
Issue -
State: closed - Opened by rLannes almost 2 years ago
- 2 comments
#345 - Pass along the RG line when using params file.
Pull Request -
State: closed - Opened by tmooney almost 2 years ago
- 1 comment
#344 - Only Preliminary Outputs in output file.
Issue -
State: open - Opened by jaxLeeRugby almost 2 years ago
- 1 comment
#343 - Error, don't understand arguments: [--denovo_reconstruc] at /usr/local/src/STAR-Fusion/STAR-Fusion line 505
Issue -
State: open - Opened by shanyn1 almost 2 years ago
- 1 comment
#342 - Can we allow paralogs?
Issue -
State: closed - Opened by EvaPang2022 almost 2 years ago
- 2 comments
#341 - New breakpoints introduced by Fusioninspector.
Issue -
State: closed - Opened by EvaPang2022 almost 2 years ago
- 2 comments
#340 - Error: No such file or directory at /usr/local/src/STAR-Fusion/PerlLib/Pipeliner.pm line 181.
Issue -
State: closed - Opened by boyoon0731 almost 2 years ago
- 1 comment
#339 - Error in building the ctat_lib.
Issue -
State: open - Opened by lizhan96 about 2 years ago
- 2 comments
#338 - Confusion about the detect fusion genes on 10X scRNA-seq
Issue -
State: open - Opened by chuiqin about 2 years ago
- 1 comment
#337 - No output in star predictions file
Issue -
State: open - Opened by manjumoorthy95 about 2 years ago
- 1 comment
#336 - STAR-Fusion failed to run different STAR junction file generated by STAR parameter '--chimOutType WithinBAM SoftClip Junctions'
Issue -
State: open - Opened by chengzhongshan about 2 years ago
- 2 comments
#335 - singularity error :FATAL: "STAR-Fusion": executable file not found in $PATH
Issue -
State: open - Opened by ioz-cas-jhy about 2 years ago
- 5 comments
#334 - STAR Fusion perl error (?)
Issue -
State: open - Opened by ameliaregina about 2 years ago
- 5 comments
#333 - how to get the 5' and 3 'junction read from star-fusion?
Issue -
State: open - Opened by ioz-cas-jhy about 2 years ago
- 2 comments
#332 - Which part of parental gene involved in a fusion?
Issue -
State: open - Opened by ioz-cas-jhy about 2 years ago
- 2 comments
#331 - Can star fusion detect fusion in normal tissues
Issue -
State: open - Opened by ioz-cas-jhy about 2 years ago
- 2 comments
#330 - Can update latest version of STAR-Fusion in bioconda?
Issue -
State: closed - Opened by chenzemin about 2 years ago
- 3 comments
#329 - STAR-Fusion can't locate Set/IntervalTree.pm after I installed interval tree , I still have the same problem
Issue -
State: open - Opened by Spartanzhao about 2 years ago
- 1 comment
#328 - not found finspector.gmap_trinity_GG.fasta, i already used --denovo_reconstruct parameter
Issue -
State: open - Opened by ioz-cas-jhy about 2 years ago
- 4 comments
#327 - WARNING, no entry stored in dbm for [ENSG00000231367.4]
Issue -
State: open - Opened by ioz-cas-jhy about 2 years ago
- 2 comments
#326 - parental gene can't find
Issue -
State: open - Opened by ioz-cas-jhy about 2 years ago
- 2 comments
#325 - STAR-Fusion.handle_multimapping_reads $LONG_ANCHOR_SIZE = 25 parameters did not work
Issue -
State: closed - Opened by chenzemin about 2 years ago
- 8 comments
#324 - Can I do many tasks at the same time
Issue -
State: open - Opened by ioz-cas-jhy about 2 years ago
- 1 comment
#323 - Fatal LIMIT error:
Issue -
State: open - Opened by kenasada about 2 years ago
- 1 comment
#322 - ERROR, no such file or directory at /usr/local/src/STAR-Fusion/PerlLib/Pipeliner.pm line 181.
Issue -
State: closed - Opened by Tcooler about 2 years ago
- 4 comments
#321 - Can i get the full sequence of a fusion? I want to overexpress it in a cell line.
Issue -
State: open - Opened by ioz-cas-jhy about 2 years ago
- 2 comments
#320 - Running STAR Fusion on multiple FASTQ files
Issue -
State: open - Opened by ajsa-nukovic about 2 years ago
- 3 comments
#319 - FusionInspector error
Issue -
State: open - Opened by EvaPang2022 about 2 years ago
- 1 comment
#318 - STARFusion FusionInspector error
Issue -
State: open - Opened by john-alexander about 2 years ago
- 8 comments
#317 - STAR-Fusion error
Issue -
State: open - Opened by lsy6949 about 2 years ago
- 1 comment
#316 - STAR-Fusion doesn't seem to work for me on usegalaxy.org
Issue -
State: open - Opened by lukefulcher over 2 years ago
- 48 comments
#315 - STAR-Fusion Error
Issue -
State: open - Opened by Ly-cf32 over 2 years ago
- 1 comment
#314 - General question about gene fusion detection
Issue -
State: open - Opened by sssantamaria over 2 years ago
- 5 comments
#313 - add exon number annotations
Issue -
State: open - Opened by brianjohnhaas over 2 years ago
#312 - Can't set output dir to a path containing spaces
Issue -
State: open - Opened by s-andrews over 2 years ago
- 4 comments
#311 - junction_breakpts_to_genes.txt file contents and use
Issue -
State: closed - Opened by tarfy over 2 years ago
- 4 comments
#310 - "BLAST+-blastn of the reference fasta sequence with itself"- cannot generate a last-matching gene pairs file
Issue -
State: open - Opened by Jonathan-kmjl over 2 years ago
#309 - Intermediate files, error message: Pipeliner::run(Pipeliner=HASH(0x55f9f15808f0)) called at ./STAR-Fusion line 792
Issue -
State: closed - Opened by mariasolruiz over 2 years ago
- 4 comments
#308 - No such file or directory error
Issue -
State: open - Opened by schmittel over 2 years ago
- 6 comments
#307 - Error in dfamscan.pl when building CTAT library
Issue -
State: open - Opened by ztamura over 2 years ago
- 7 comments
#306 - Is the STAR aligner `/path/to/STAR-2.7.0f/bin`? Thank you.
Issue -
State: open - Opened by cmccabe0728 over 2 years ago
- 5 comments
#305 - install star fusion without adding to path
Issue -
State: closed - Opened by cmccabe0728 over 2 years ago
- 2 comments
#304 - How to get the sequence of junction reads and spanning reads?
Issue -
State: closed - Opened by cx994 over 2 years ago
- 4 comments
#303 - ERROR: Genome version: 2.7.1a is INCOMPATIBLE with running STAR version: 2.7.5c
Issue -
State: closed - Opened by amasden over 2 years ago
- 1 comment
#302 - Installation Error: IntervalTree.xs:13:10: fatal error: 'tr1/memory' file not found
Issue -
State: open - Opened by Mint-1017 over 2 years ago
- 5 comments
#301 - WARNING, no entry stored in dbm for [ENSG00000210082.2]
Issue -
State: open - Opened by cx994 over 2 years ago
- 7 comments
#300 - STAR-Fusion : Error in genome lib build(Error, no seek pos for acc: )
Issue -
State: open - Opened by ps120195 almost 3 years ago
- 9 comments
#299 - Error in dfamscan.pl
Issue -
State: open - Opened by hfl112 almost 3 years ago
- 5 comments
#298 - Running STAR-Fusion with multiple FASTQ files
Issue -
State: open - Opened by geejaytee almost 3 years ago
- 1 comment
#297 - FusionFilter got different results
Issue -
State: closed - Opened by Johnnywang92 almost 3 years ago
- 2 comments
#296 - Cannot find the file "run_distributed_jobs_locally.py"
Issue -
State: open - Opened by lijiang825 almost 3 years ago
- 1 comment
#295 - Bug with prep_distributed_jobs.py
Issue -
State: closed - Opened by lijiang825 almost 3 years ago
- 2 comments
#294 - Determining Length of Fusion Transcript
Issue -
State: open - Opened by YogiOnBioinformatics almost 3 years ago
- 3 comments
#293 - inconsistent fusion results
Issue -
State: open - Opened by sunnywheat almost 3 years ago
- 4 comments
#292 - Building customized STAR-fusion index DB hangs at the step of "dfamscan.pl"
Issue -
State: closed - Opened by hailiangmei about 3 years ago
- 4 comments
#291 - Fusion with intron insertion
Issue -
State: closed - Opened by cswph about 3 years ago
- 5 comments
#290 - value too great for base
Issue -
State: open - Opened by jianguozhouzunyimedicaluniversity about 3 years ago
- 2 comments
#289 - problem with CTAT genome build
Issue -
State: open - Opened by anoronh4 about 3 years ago
- 5 comments
#288 - Help with 'missing' fusion
Issue -
State: closed - Opened by MikeWLloyd about 3 years ago
- 5 comments
#287 - Error, cannot locate genome_lib_dir: /data/ctat_genome_lib_build_dir
Issue -
State: open - Opened by praveenraj2018 about 3 years ago
- 6 comments
#286 - Error: died with ret 35072 No such file or directory at /usr/local/src/STAR-Fusion/PerlLib/Pipeliner.pm line 181
Issue -
State: closed - Opened by praveenraj2018 about 3 years ago
- 3 comments
#285 - STAR-Fusion v1.10.1 does not contain Singularity image
Issue -
State: closed - Opened by bounlu about 3 years ago
- 1 comment
#284 - min_pct_MM_nonspecific argument not found error
Issue -
State: open - Opened by dgomezpere about 3 years ago
- 1 comment
#283 - command worked fine with test data but no fusions detected in one's own data
Issue -
State: open - Opened by karenhqq about 3 years ago
- 4 comments
#282 - Error: Could not extract gene name from Transcript_id: Fusion Inspector
Issue -
State: open - Opened by think-o about 3 years ago
- 13 comments
#281 - Transcript selection for coding effect examination
Issue -
State: closed - Opened by stsergbg about 3 years ago
- 4 comments
#280 - CTAT library error
Issue -
State: closed - Opened by been9312 over 3 years ago
#279 - has the docker of star-fusion been updated
Issue -
State: open - Opened by worker000000 over 3 years ago
- 3 comments
#278 - error running STAR-Fusion
Issue -
State: closed - Opened by kyawagwin over 3 years ago
- 5 comments
#273 - Mouse CTAT files are missing for v1.10
Issue -
State: open - Opened by bounlu over 3 years ago
- 8 comments
#271 - Details on FFPM computation
Issue -
State: open - Opened by MagdalenaFeldhahn over 3 years ago
- 15 comments
#266 - Error: Argument "brkpt_donorA" isn't numeric in preincrement
Issue -
State: open - Opened by ziy776 over 3 years ago
- 2 comments
#257 - STAR-fusion error: died with Failed to fetch sequence in chrM:-352-2601
Issue -
State: open - Opened by YingYa over 3 years ago
- 6 comments
#256 - STAR-fusion error: died with ret 9 No such file or directory at /usr/local/apps/STAR/STAR-Fusion-1.9.1/bin/PerlLib/Pipeliner.pm line 181.
Issue -
State: open - Opened by rpauly over 3 years ago
- 8 comments
#228 - Feature request - allow outputing sorted bam files
Issue -
State: open - Opened by IvantheDugtrio about 4 years ago
- 9 comments
#223 - NPM1-ALK and pseudogenes
Issue -
State: closed - Opened by jhl667 about 4 years ago
- 13 comments