Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / SIMEXP/load_confounds issues and pull requests

#157 - Can't load any strategy

Issue - State: closed - Opened by psymbio over 1 year ago - 1 comment

#156 - ICA Aroma strategy

Issue - State: closed - Opened by Yvonneser over 2 years ago - 1 comment

#155 - create a PR to brainspace with the new nilearn interface

Issue - State: closed - Opened by pbellec over 2 years ago - 1 comment

#154 - Importing Params

Issue - State: closed - Opened by srastegarnia over 2 years ago

#153 - Saving the img back to nii.gz after load confounds level

Issue - State: closed - Opened by Yvonneser almost 3 years ago - 3 comments

#152 - how to check the number of scrubbed volumes?

Issue - State: closed - Opened by GerardYu almost 3 years ago - 1 comment

#151 - [MNT] Add warning message in README.md

Pull Request - State: closed - Opened by htwangtw almost 3 years ago - 7 comments

#150 - Add a warning about migration to nilearn

Issue - State: closed - Opened by htwangtw almost 3 years ago

#149 - ENH adapt all the tests and the output to use pandas.DataFrame

Pull Request - State: closed - Opened by htwangtw about 3 years ago - 3 comments

#148 - FIX outdated information and docs on `sample_mask`

Pull Request - State: closed - Opened by htwangtw about 3 years ago - 2 comments

#147 - move from numpy array of confounds to pandas df

Issue - State: closed - Opened by pbellec about 3 years ago - 2 comments

#146 - issues in README

Issue - State: closed - Opened by pbellec about 3 years ago - 2 comments

#145 - compatibility issue with older tsv confound files.

Issue - State: closed - Opened by Yvonneser about 3 years ago - 3 comments

#144 - NF/ENH revise the strategeis

Pull Request - State: closed - Opened by htwangtw over 3 years ago - 3 comments

#143 - Replacing current strategies with a smaller subset

Issue - State: closed - Opened by htwangtw over 3 years ago - 8 comments

#142 - NF sample_mask

Pull Request - State: closed - Opened by htwangtw over 3 years ago - 14 comments

#141 - NF Validate input files and limit input to image files

Pull Request - State: closed - Opened by htwangtw over 3 years ago - 5 comments

#140 - Refactor compcor

Pull Request - State: closed - Opened by htwangtw over 3 years ago - 5 comments

#139 - Allow cifti and gifti as input file

Issue - State: closed - Opened by htwangtw over 3 years ago - 2 comments

#138 - document COMPCOR strategies

Issue - State: open - Opened by pbellec over 3 years ago

#137 - DOCS ICA-AROMA documentation

Pull Request - State: closed - Opened by htwangtw over 3 years ago - 2 comments

#136 - Fixes issue #135

Pull Request - State: closed - Opened by pbellec over 3 years ago - 2 comments

#135 - code refactoring

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#134 - brainhack 2020 proceedings

Issue - State: open - Opened by pbellec over 3 years ago - 1 comment

#133 - document ICA denoising

Issue - State: closed - Opened by pbellec over 3 years ago - 2 comments

#132 - generate `sample_mask`

Issue - State: closed - Opened by pbellec over 3 years ago - 3 comments

#131 - add sources of funding

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#130 - Iss119

Pull Request - State: closed - Opened by pbellec over 3 years ago - 1 comment

#129 - require nifti file as input and validate extension.

Issue - State: closed - Opened by pbellec over 3 years ago - 3 comments

#128 - enable to work when json is missing

Issue - State: closed - Opened by pbellec over 3 years ago

#127 - add "despiking" noise component

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment
Labels: wontfix

#126 - adding scrubbing-based strategies (#119) and testing for these strate…

Pull Request - State: closed - Opened by pbellec over 3 years ago - 1 comment

#125 - simplify `_optimize_scrub`

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#124 - Fixes issue #112

Pull Request - State: closed - Opened by pbellec over 3 years ago - 1 comment

#123 - improve docs for the strategies.

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#122 - docs: add FrancoisPgm as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#121 - remove PCA reduction on motion parameters

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#120 - possible API change for compcor

Issue - State: open - Opened by pbellec over 3 years ago - 1 comment

#119 - scrubbing strategy

Issue - State: closed - Opened by pbellec over 3 years ago - 2 comments

#118 - default for compcor?

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#117 - update doc: dataframes no longer supported.

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#116 - test the censoring feature.

Issue - State: closed - Opened by pbellec over 3 years ago - 2 comments

#115 - Iss78: properly handling multiple masks in anatCompCor

Pull Request - State: closed - Opened by pbellec over 3 years ago - 4 comments

#114 - tests failing

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#113 - #105 FIX/TEST move nilearn to 0.7.1 and fix failed test

Pull Request - State: closed - Opened by htwangtw over 3 years ago - 2 comments

#112 - refactor `parser.py` to separate all confound manipulation tools.

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#111 - merge info from readme and the demo notebook

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#110 - docs: add FrancoisPgm as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#109 - docs: add m-w-w as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#108 - docs: add smeisler as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#107 - docs: add htwangtw as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#106 - docs: add htwangtw as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago - 1 comment

#105 - `nilearn` behaviour with PSC changed

Issue - State: closed - Opened by htwangtw over 3 years ago - 5 comments

#104 - #74 make a proper demo

Pull Request - State: closed - Opened by m-w-w over 3 years ago - 7 comments

#103 - calculate derivatives and square expansions on the fly

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#102 - add a "suggest strategies" tool

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment
Labels: brainhackMTL2020

#101 - Create LICENSE

Pull Request - State: closed - Opened by pbellec over 3 years ago - 1 comment

#100 - Iss78: Adding support for acompcor compartments

Pull Request - State: closed - Opened by smeisler over 3 years ago - 6 comments

#99 - Iss53 (support for censoring)

Pull Request - State: closed - Opened by smeisler over 3 years ago - 8 comments

#98 - Update README.md

Pull Request - State: closed - Opened by pbellec over 3 years ago - 1 comment

#97 - commenting the code

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#96 - #52 ADD three ICA-AROMA related strategy

Pull Request - State: closed - Opened by htwangtw over 3 years ago - 10 comments

#95 - #94 improve error message

Pull Request - State: closed - Opened by FrancoisPgm over 3 years ago - 11 comments

#94 - improve error messages for confounds not found

Issue - State: closed - Opened by FrancoisPgm over 3 years ago - 2 comments
Labels: enhancement, brainhackMTL2020

#93 - recommend inclusion of high pass filter or not?

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#92 - missing strategy in the docs$

Issue - State: closed - Opened by pbellec over 3 years ago - 2 comments

#91 - docs: add nuKs as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#90 - docs: add srastegarnia as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#89 - docs: add effigies as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#88 - docs: add smeisler as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#87 - docs: add pbellec as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#86 - docs: add htwangtw as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#85 - docs: add emdupre as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#84 - docs: add HanadS as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#83 - docs: add FrancoisPgm as a contributor

Pull Request - State: closed - Opened by allcontributors[bot] over 3 years ago

#82 - identify an example dataset on openneuro

Issue - State: closed - Opened by pbellec over 3 years ago - 13 comments
Labels: brainhackMTL2020

#81 - set up all_contributors bot

Issue - State: closed - Opened by pbellec over 3 years ago - 6 comments
Labels: brainhackMTL2020

#80 - add more denoising strategies

Issue - State: closed - Opened by pbellec over 3 years ago - 4 comments

#79 - validation experiment

Issue - State: closed - Opened by pbellec over 3 years ago - 3 comments

#78 - anatCompCor compartment selection

Issue - State: closed - Opened by smeisler over 3 years ago - 8 comments
Labels: bug, enhancement, brainhackMTL2020

#77 - separate cosines for low- vs high- pass filtering

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#76 - support for scrubbing.

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#75 - support for aroma

Issue - State: closed - Opened by pbellec over 3 years ago - 1 comment

#74 - make a proper demo

Issue - State: closed - Opened by pbellec over 3 years ago - 2 comments
Labels: brainhackMTL2020

#73 - Fix compat with fmriprep 20.2.0+

Pull Request - State: closed - Opened by nuKs over 3 years ago - 5 comments

#72 - confounds in fmriprep-20.2lts release

Issue - State: closed - Opened by srastegarnia almost 4 years ago - 3 comments

#71 - Pennlinc

Pull Request - State: closed - Opened by a3sha2 almost 4 years ago - 3 comments

#70 - regression in nilearn is broken for voxels with no signal

Issue - State: open - Opened by pbellec almost 4 years ago - 1 comment

#69 - Can't load confounds on friends bold data

Issue - State: closed - Opened by FrancoisPgm about 4 years ago - 2 comments
Labels: bug

#68 - created a helper function to simplify the code of _load_single

Pull Request - State: closed - Opened by pbellec about 4 years ago - 1 comment

#62 - separate parser tools from preprocessing strategies

Issue - State: closed - Opened by pbellec about 4 years ago - 1 comment
Labels: enhancement

#57 - Heads up for potential name changes

Issue - State: closed - Opened by effigies over 4 years ago - 4 comments
Labels: enhancement

#53 - add support for scrubbing.

Issue - State: closed - Opened by pbellec over 4 years ago - 2 comments
Labels: enhancement, help wanted, brainhackMTL2020

#52 - add support for ICA-AROMA

Issue - State: closed - Opened by pbellec over 4 years ago - 4 comments
Labels: enhancement, help wanted, brainhackMTL2020

#48 - high_pass vs low_pass

Issue - State: closed - Opened by pbellec over 4 years ago - 1 comment
Labels: enhancement, help wanted, brainhackMTL2020

#43 - compor strategy to be implemented with anatomical, temporal and basic options

Issue - State: closed - Opened by HanadS over 4 years ago - 2 comments

#41 - add test using confound files featuring all possible confounds

Issue - State: closed - Opened by pbellec over 4 years ago - 2 comments
Labels: help wanted, test, brainhackMTL2020

#26 - add initial volume suppression to reach steady state

Issue - State: closed - Opened by pbellec over 4 years ago - 2 comments
Labels: enhancement