SED-ML/KiSAO issues and pull requests

#115 - Create new 'DAE Solver' category; put IDA-like things in it.

Pull Request - State: closed - Opened by luciansmith 4 months ago - 1 comment

#114 - Make 407 the root-finding steady state algorithm.

Pull Request - State: closed - Opened by luciansmith about 1 year ago

#113 - A handful of changes:

Pull Request - State: closed - Opened by luciansmith about 1 year ago - 1 comment

#112 - Automatic releases no longer working

Issue - State: open - Opened by luciansmith about 1 year ago - 2 comments
Labels: bug

#111 - Update for release

Pull Request - State: closed - Opened by luciansmith about 1 year ago

#110 - Add two new terms, change organization.

Pull Request - State: closed - Opened by luciansmith about 1 year ago - 5 comments

#109 - Request: New base 'simulate in time' algorithm

Issue - State: closed - Opened by luciansmith almost 2 years ago - 4 comments
Labels: New term

#108 - Fix typo in definition of "biological state optimization method"

Issue - State: closed - Opened by jonrkarr over 2 years ago
Labels: bug

#107 - feat: added algorithm concepts for MPP

Pull Request - State: closed - Opened by jonrkarr over 2 years ago - 6 comments

#106 - Enable query algorithms for recommendations for algorithms to be terms for abstract classes of algorithms (e.g., Gillespie-like rather than SSA)

Issue - State: open - Opened by jonrkarr over 2 years ago

#105 - feat: Added algorithms and characteristics for attractor methods in mpbn

Pull Request - State: open - Opened by jonrkarr over 2 years ago

#104 - New terms for mpbn

Issue - State: open - Opened by pauleve over 2 years ago - 8 comments
Labels: New term

#103 - Automatic update of KISAO on obo foundry and ontology lookup service (OLS)

Issue - State: open - Opened by matthiaskoenig over 2 years ago - 6 comments
Labels: bug

#102 - Release 2.30 not triggered

Issue - State: closed - Opened by matthiaskoenig over 2 years ago - 3 comments

#101 - SED-ML aggregation functions

Pull Request - State: closed - Opened by matthiaskoenig over 2 years ago

#100 - Add terms for terms of UniformTimeCourse

Issue - State: open - Opened by luciansmith almost 3 years ago - 4 comments
Labels: New term

#99 - labels of systems properties should be lowercase

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago - 5 comments
Labels: enhancement, convention

#98 - Some KISAO terms fail lookup with `get_normalized_id`

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago - 3 comments
Labels: bug, irreproducible

#97 - Some KISAO terms do not match KISAO pattern

Issue - State: closed - Opened by matthiaskoenig almost 3 years ago - 3 comments
Labels: bug

#96 - New terms for uniform time course attributes

Issue - State: open - Opened by jonrkarr about 3 years ago

#95 - Specify that math functions ignore NaN.

Pull Request - State: closed - Opened by luciansmith about 3 years ago - 1 comment

#94 - Clarify math functions as to whether to ignore NaN

Issue - State: closed - Opened by luciansmith about 3 years ago - 3 comments
Labels: bug

#93 - SED-ML Aggregation function (New terms for count, stddev, variance)

Issue - State: closed - Opened by jonrkarr about 3 years ago - 5 comments

#92 - Lps karr new terms

Pull Request - State: closed - Opened by jonrkarr about 3 years ago - 1 comment

#91 - New KiSAO terms from https://docs.google.com/spreadsheets/d/1f3rBUUhO…

Pull Request - State: closed - Opened by luciansmith about 3 years ago - 2 comments

#90 - New terms for SED-ML use

Issue - State: closed - Opened by luciansmith about 3 years ago - 13 comments
Labels: New term

#88 - Automate release to BioPortal in GitHub action

Issue - State: closed - Opened by jonrkarr over 3 years ago - 2 comments
Labels: Other

#87 - Change redirect for biomodels.net from SourceForge to GitHub

Issue - State: closed - Opened by jonrkarr over 3 years ago - 1 comment
Labels: Other

#86 - Add terms for slices of dimensions of (in)dependent variables of outputs of simulations

Issue - State: open - Opened by jonrkarr over 3 years ago - 2 comments
Labels: New term