Ecosyste.ms: Issues

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GitHub / SEA-PHAGES/pdm_utils issues and pull requests

#24 - Bump pymysql from 0.9.3 to 1.1.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#23 - Check for duplicate tickets

Issue - State: open - Opened by scresawn over 2 years ago
Labels: enhancement

#22 - Biopython permission error for first run after setup on new device

Issue - State: closed - Opened by chg60 over 2 years ago - 1 comment

#21 - Unlock the update pipeline

Issue - State: open - Opened by chg60 over 2 years ago

#20 - Update repo to use newer biopython version

Issue - State: open - Opened by chg60 about 3 years ago - 6 comments

#19 - Use alembic for MySQL schema migration

Issue - State: open - Opened by chg60 about 3 years ago
Labels: enhancement

#18 - Documentation bug

Issue - State: closed - Opened by scresawn about 3 years ago - 1 comment

#16 - replace URL's to new server

Pull Request - State: closed - Opened by cdshaffer almost 4 years ago

#15 - Bump cryptography from 3.2 to 3.3.2

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#14 - Bump cryptography from 2.9.2 to 3.2

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#13 - wrap-around tRNAs not working

Issue - State: closed - Opened by chg60 over 4 years ago - 1 comment

#12 - update pipeline fails if phage.Cluster being changed to 'Singleton'

Issue - State: closed - Opened by chg60 over 4 years ago - 1 comment

#11 - feature request: add ability to point to arbitrary URL for other databases

Issue - State: closed - Opened by cdshaffer over 4 years ago - 2 comments
Labels: enhancement

#10 - Bump bleach from 3.1.0 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#9 - Bump bleach from 3.1.0 to 3.1.2

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#8 - Bump bleach from 3.1.0 to 3.1.1

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#7 - mysqldump command line password

Issue - State: closed - Opened by chg60 almost 5 years ago

#6 - integration tests do not remove test files afterwards

Issue - State: closed - Opened by tmavrich almost 5 years ago - 1 comment

#5 - MMSeqs error - unable to find output file

Issue - State: closed - Opened by tmavrich about 5 years ago - 1 comment

#4 - cdd pipeline gets stuck on MacOS

Issue - State: closed - Opened by tmavrich about 5 years ago - 2 comments

#3 - Genome object's 'cds_features' attribute list issue

Issue - State: closed - Opened by edgingtonn1 about 5 years ago - 2 comments
Labels: bug

#2 - Ubuntu MySQL Installation clarification

Issue - State: closed - Opened by edgingtonn1 about 5 years ago - 1 comment
Labels: enhancement

#1 - 'export' pipeline fails when conda env is active

Issue - State: closed - Opened by chg60 over 5 years ago - 3 comments