Ecosyste.ms: Issues

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GitHub / SD2E/SYNBICT issues and pull requests

#55 - Dependency issues when doing fresh install

Issue - State: open - Opened by zachsents about 2 years ago - 1 comment

#54 - Update sequences_to_features.py

Pull Request - State: open - Opened by JMante1 over 3 years ago

#53 - Create python-publish.yml

Pull Request - State: open - Opened by JMante1 over 3 years ago

#52 - Update setup.py

Pull Request - State: open - Opened by JMante1 over 3 years ago

#51 - Update sequences_to_features.py

Pull Request - State: open - Opened by JMante1 almost 4 years ago

#50 - Complex interaction issue

Issue - State: open - Opened by benjhatch over 4 years ago

#49 - Convert to sbol2

Pull Request - State: closed - Opened by tcmitchell over 4 years ago

#48 - Convert to pySBOL2

Issue - State: open - Opened by tcmitchell over 4 years ago - 2 comments

#47 - Introduce NotFoundError for backward and forward compatibility

Pull Request - State: closed - Opened by tcmitchell almost 5 years ago - 1 comment

#46 - Be dynamic about raised exceptions for object not found

Issue - State: open - Opened by tcmitchell almost 5 years ago

#45 - Label order of inputs & outputs

Issue - State: open - Opened by jakebeal about 5 years ago

#43 - Make New Copies of Pruned ComponentDefinitions

Issue - State: open - Opened by nroehner about 5 years ago

#42 - Add Tests for Annotating Hierarchy of ComponentDefinitions

Issue - State: open - Opened by nroehner about 5 years ago

#41 - Large-scale testing

Issue - State: open - Opened by jakebeal about 5 years ago

#40 - VPR differences

Issue - State: open - Opened by Fontanapink over 5 years ago - 4 comments

#39 - Annotations in multiple levels

Issue - State: open - Opened by Fontanapink over 5 years ago

#38 - Remove redundant SequenceAnnotations

Issue - State: open - Opened by cjmyers over 5 years ago

#37 - Start testing

Pull Request - State: closed - Opened by jakebeal over 5 years ago - 1 comment

#36 - Feature names should be accompanied by role information

Issue - State: closed - Opened by jakebeal over 5 years ago

#35 - Refactor human input to a separate module

Issue - State: open - Opened by jakebeal over 5 years ago

#34 - Accept GFF inputs

Issue - State: open - Opened by jakebeal over 5 years ago

#33 - Inexact matches with BLAST

Issue - State: open - Opened by jakebeal over 5 years ago

#32 - Remap purl.obolibrary.org CHEBI entries

Issue - State: open - Opened by jakebeal about 6 years ago - 2 comments

#31 - Utility for correcting stub labels

Issue - State: open - Opened by jakebeal about 6 years ago

#30 - Workflow for review and publication of SynBioHub entries

Issue - State: open - Opened by jakebeal about 6 years ago

#29 - Allow SPARQL writing in SD2 SynBioHub deployment

Issue - State: closed - Opened by jakebeal about 6 years ago - 1 comment

#28 - README

Issue - State: closed - Opened by jakebeal about 6 years ago

#27 - Accept GenBank/FASTA inputs

Issue - State: closed - Opened by jakebeal about 6 years ago - 2 comments

#26 - Refactoring

Issue - State: closed - Opened by jakebeal about 6 years ago - 2 comments

#25 - How does this integrate into the pipeline?

Issue - State: open - Opened by jakebeal about 6 years ago

#24 - Figure out sequencing data workflow

Issue - State: open - Opened by jakebeal about 6 years ago

#23 - Specification comparison with sequence reads

Issue - State: open - Opened by jakebeal about 6 years ago - 1 comment

#21 - Recognize common cases of broken logic connections

Issue - State: open - Opened by jakebeal about 6 years ago

#20 - Automatic visualization of circuits

Issue - State: closed - Opened by jakebeal about 6 years ago - 1 comment

#19 - Error on logic inference for cyclic networks

Issue - State: open - Opened by jakebeal about 6 years ago

#17 - Generate truth table automatically

Issue - State: open - Opened by jakebeal about 6 years ago

#16 - Compute end-to-end logical function for a circuit

Issue - State: open - Opened by jakebeal about 6 years ago

#15 - Upload automation

Issue - State: open - Opened by jakebeal about 6 years ago

#14 - VisBOL-friendly ModuleDefinitions

Issue - State: open - Opened by jakebeal about 6 years ago - 3 comments

#13 - Inference for protein circuits

Issue - State: closed - Opened by jakebeal about 6 years ago

#12 - Human approval of borderline feature annotations

Issue - State: closed - Opened by jakebeal about 6 years ago - 1 comment

#11 - Use versioning on sequence feature annotation

Issue - State: closed - Opened by jakebeal about 6 years ago - 2 comments

#10 - Report sequence feature changes made

Issue - State: closed - Opened by jakebeal about 6 years ago - 1 comment

#9 - Load in feature annotation list

Issue - State: closed - Opened by jakebeal about 6 years ago - 2 comments

#8 - BLAST against GenBank?

Issue - State: open - Opened by jakebeal about 6 years ago

#7 - Explore other 3rd party feature annotation tools

Issue - State: open - Opened by jakebeal about 6 years ago

#6 - Feature annotation via comparison to public SynBioHub

Issue - State: open - Opened by jakebeal about 6 years ago

#5 - Feature annotation via SnapGene

Issue - State: open - Opened by jakebeal about 6 years ago

#4 - Set up an architecture for SYNBICT

Issue - State: closed - Opened by jakebeal about 6 years ago - 1 comment

#3 - Apply automated curation to Novel Chassis

Issue - State: open - Opened by jakebeal about 6 years ago - 2 comments

#2 - Set up regression testing

Issue - State: closed - Opened by jakebeal about 6 years ago

#1 - Populate repository

Issue - State: closed - Opened by jakebeal about 6 years ago - 1 comment