Ecosyste.ms: Issues

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GitHub / Rostlab/nalaf issues and pull requests

#184 - Bump certifi from 2020.12.5 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#183 - Feature/2325 an one ml model for all entities

Pull Request - State: closed - Opened by juanmirocks about 3 years ago

#182 - Feature/2325 AN one ml model for all entities

Pull Request - State: closed - Opened by ashish-narwal over 3 years ago

#181 - Bump urllib3 from 1.24.3 to 1.26.5

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#180 - Update

Pull Request - State: closed - Opened by ashish-narwal over 3 years ago - 1 comment

#179 - how to training

Issue - State: closed - Opened by SeekPoint about 6 years ago - 1 comment

#178 - sudo python3 -m nalaf.download_data

Issue - State: closed - Opened by ghost about 6 years ago - 1 comment

#177 - nalaf.download_data always failed, any workaround?

Issue - State: closed - Opened by SeekPoint over 6 years ago - 5 comments

#176 - No module named 'nalaf.domain'

Issue - State: closed - Opened by Gab0 about 7 years ago - 5 comments

#175 - Examples on using this for english language?

Issue - State: closed - Opened by NirantK over 7 years ago - 1 comment

#171 - Rename taggers.py to annotators.py

Issue - State: open - Opened by juanmirocks over 8 years ago

#170 - Move relna relation features to nalaf

Issue - State: open - Opened by juanmirocks over 8 years ago

#169 - Check partids creation with datasets other than plain.html's

Issue - State: open - Opened by juanmirocks almost 9 years ago - 1 comment

#168 - Add code for training word embeddings

Issue - State: closed - Opened by juanmirocks almost 9 years ago - 1 comment

#167 - Likely remove Parts' tokens

Issue - State: closed - Opened by juanmirocks almost 9 years ago - 1 comment

#166 - Move from relna the standard error and deviation to evaluators

Issue - State: closed - Opened by juanmirocks almost 9 years ago - 3 comments

#165 - Move relna Document Level evaluator to nalaf

Issue - State: closed - Opened by juanmirocks almost 9 years ago - 1 comment

#164 - Move relna relations.py into nalaf

Issue - State: closed - Opened by juanmirocks almost 9 years ago - 1 comment

#163 - Make nalaf depend on textblob or even spacy

Issue - State: closed - Opened by juanmirocks almost 9 years ago - 1 comment

#162 - General list of tasks of merging nalaf, nala, relna

Issue - State: closed - Opened by juanmirocks about 9 years ago - 3 comments

#161 - Delete Output Formats wiki page ?

Issue - State: open - Opened by juanmirocks about 9 years ago - 2 comments

#160 - Example script doesn't annotate mutations (correct?)

Issue - State: closed - Opened by juanmirocks about 9 years ago - 2 comments
Labels: bug

#159 - Bug trying to run example (related to GNormPlus)

Issue - State: open - Opened by juanmirocks about 9 years ago - 5 comments
Labels: bug

#158 - Change the way features are saved

Issue - State: open - Opened by abojchevski about 9 years ago - 4 comments

#157 - Tokenizer non- ascii chars

Issue - State: closed - Opened by abojchevski about 9 years ago - 3 comments

#156 - Enable Travis CI

Issue - State: closed - Opened by abojchevski about 9 years ago

#155 - Remove dependencies on IDs

Issue - State: open - Opened by abojchevski about 9 years ago

#154 - Make N-gram feature generator

Issue - State: closed - Opened by abojchevski about 9 years ago - 1 comment
Labels: invalid

#153 - HighRecallFilter implement threshold

Issue - State: closed - Opened by carstenuhlig about 9 years ago - 1 comment
Labels: duplicate

#152 - Replace crfsuite

Issue - State: closed - Opened by abojchevski about 9 years ago - 1 comment

#150 - crossvalidation switch row order (last few rows)

Issue - State: closed - Opened by carstenuhlig about 9 years ago

#149 - Stats csv has to include subclasses 0-2

Issue - State: closed - Opened by carstenuhlig about 9 years ago

#148 - Run IAA training with fixed test

Issue - State: closed - Opened by abojchevski about 9 years ago - 2 comments

#147 - Fix annotatables

Issue - State: closed - Opened by abojchevski about 9 years ago

#145 - Refactor Wiki

Issue - State: closed - Opened by juanmirocks about 9 years ago

#144 - Split repos

Issue - State: closed - Opened by juanmirocks about 9 years ago - 3 comments

#143 - csv cross val update

Issue - State: closed - Opened by abojchevski about 9 years ago

#142 - IAA calculation code

Issue - State: closed - Opened by abojchevski about 9 years ago - 2 comments

#141 - Fix GNormPlus offsets

Issue - State: closed - Opened by abojchevski about 9 years ago

#140 - Create MedlineReader

Issue - State: closed - Opened by abojchevski over 9 years ago

#139 - Include training into nala.py

Issue - State: closed - Opened by abojchevski over 9 years ago - 1 comment
Labels: wontfix

#138 - Tagtog not changing view from annotations from annotator x to annotator y

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment
Labels: bug

#137 - [Continuous] Bootstrapping Iteration

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment

#136 - Ashish

Pull Request - State: closed - Opened by ashishbaghudana over 9 years ago

#135 - Organism pre-selection annotator

Issue - State: open - Opened by abojchevski over 9 years ago

#134 - Create Manual DocumentSelector

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 2 comments

#133 - Put information from thesis carsten on wiki

Issue - State: closed - Opened by carstenuhlig over 9 years ago

#132 - Refactor stats file

Issue - State: closed - Opened by abojchevski over 9 years ago

#131 - Explore tokenizer

Issue - State: closed - Opened by abojchevski over 9 years ago

#130 - Add protein pre-selection

Issue - State: closed - Opened by abojchevski over 9 years ago

#129 - Add export to ann.json to nala

Issue - State: closed - Opened by abojchevski over 9 years ago

#128 - Rename demo predict to nala

Issue - State: closed - Opened by abojchevski over 9 years ago

#127 - Show warning in demo

Issue - State: closed - Opened by abojchevski over 9 years ago

#126 - Post-processing

Issue - State: closed - Opened by abojchevski over 9 years ago - 2 comments

#125 - Interface refactoring

Issue - State: closed - Opened by abojchevski over 9 years ago - 1 comment

#124 - Demo refactoring

Issue - State: closed - Opened by abojchevski over 9 years ago - 1 comment

#123 - User fast tests

Issue - State: closed - Opened by abojchevski over 9 years ago

#122 - Find out a way to define IDs for entities

Issue - State: open - Opened by carstenuhlig over 9 years ago

#121 - Do 1-2 bootstrapping rounds with each 10 docs

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment

#120 - travis update branches

Pull Request - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment

#119 - Prepare Bachelor Thesis

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 2 comments

#118 - Final script with relationship extraction

Issue - State: closed - Opened by carstenuhlig over 9 years ago

#116 - Interfaces separation to have a Tagger Class/Object

Issue - State: closed - Opened by carstenuhlig over 9 years ago

#115 - Performance by cross-validation in Evaluation

Issue - State: closed - Opened by carstenuhlig over 9 years ago
Labels: bootstrapperModule

#114 - Relation Extraction

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment

#113 - Part_id bug with idp4 dataset from tagtog

Issue - State: open - Opened by abojchevski over 9 years ago - 7 comments
Labels: bug

#112 - Restructure Folders to comply to Src.Package

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 4 comments

#111 - Investigate crfsuite feature order

Issue - State: closed - Opened by abojchevski over 9 years ago - 2 comments

#110 - Create random (but repeatable) dataset splitting

Issue - State: closed - Opened by abojchevski over 9 years ago

#109 - Create features for NL mentions

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment
Labels: featureCreation

#108 - create projects on tagtog

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 4 comments

#107 - Check merging strategies

Issue - State: closed - Opened by juanmirocks over 9 years ago - 1 comment

#103 - Publish 2 final binary models

Issue - State: closed - Opened by abojchevski over 9 years ago - 1 comment

#102 - Create a test corpus

Issue - State: closed - Opened by abojchevski over 9 years ago - 1 comment

#101 - Create a test corpus

Issue - State: closed - Opened by abojchevski over 9 years ago
Labels: duplicate

#98 - Finalize Bootstrapping

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 2 comments
Labels: bootstrapperModule

#97 - Evaluation of reviewed data

Issue - State: closed - Opened by carstenuhlig over 9 years ago
Labels: bootstrapperModule

#96 - Manual annotation

Issue - State: closed - Opened by carstenuhlig over 9 years ago
Labels: bootstrapperModule

#95 - Interfaces for Tagging

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment
Labels: bootstrapperModule

#94 - Interface for Learning

Issue - State: closed - Opened by carstenuhlig over 9 years ago
Labels: bootstrapperModule

#91 - Show test coverage badge

Issue - State: open - Opened by juanmirocks over 9 years ago - 6 comments

#89 - [Bootstrapper Module] Documentation

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment
Labels: bootstrapperModule

#87 - [Continuous] Feature exploration

Issue - State: closed - Opened by abojchevski over 9 years ago - 1 comment
Labels: featureCreation

#86 - CRF Suite output

Issue - State: open - Opened by abojchevski over 9 years ago

#80 - Check for whether document is an abstract in advanced way.

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment

#77 - Annotator Hierarchy

Issue - State: open - Opened by abojchevski over 9 years ago - 3 comments
Labels: enhancement

#63 - Wrapper of method to jvm

Issue - State: open - Opened by juanmirocks over 9 years ago

#60 - [Continuous] Fix TODOs & implement and fix tests

Issue - State: closed - Opened by juanmirocks over 9 years ago - 2 comments

#54 - Write error bars / std deviation for NL stats graphs

Issue - State: closed - Opened by juanmirocks over 9 years ago - 4 comments

#45 - [Continuous] Documentation

Issue - State: closed - Opened by juanmirocks over 9 years ago - 1 comment

#44 - Create Seed ML (iteration_0) Method

Issue - State: closed - Opened by juanmirocks over 9 years ago - 1 comment

#43 - Define Bootstrapper module

Issue - State: closed - Opened by juanmirocks over 9 years ago - 1 comment

#13 - Dataset define training and test set

Issue - State: closed - Opened by carstenuhlig over 9 years ago - 1 comment
Labels: duplicate