Ecosyste.ms: Issues

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GitHub / Rostlab/SeqVec issues and pull requests

#27 - model resources cannot be downloaded

Issue - State: open - Opened by Jmpax404 3 months ago - 5 comments

#26 - seqVec installation Error

Issue - State: open - Opened by amalislam675 5 months ago - 3 comments

#25 - IndexError: list index out of range

Issue - State: closed - Opened by HinamonAmu almost 3 years ago - 1 comment

#24 - Randomness for a protein sequence embedding

Issue - State: closed - Opened by pzhang84 about 3 years ago - 1 comment

#23 - about change the proteins' length to a same lenth

Issue - State: closed - Opened by viko-3 about 3 years ago - 3 comments

#21 - Error while trying to embed data

Issue - State: closed - Opened by rothita over 3 years ago - 1 comment

#20 - Issue running seqvec on example file in Google Colab

Issue - State: open - Opened by tijeco over 3 years ago - 7 comments

#19 - Update README.md

Pull Request - State: closed - Opened by sacdallago about 4 years ago

#18 - pip install seqvec fails

Issue - State: closed - Opened by tueboesen over 4 years ago - 7 comments

#17 - ELMo-Tutorial website 404

Issue - State: closed - Opened by zi-xiao over 4 years ago - 1 comment

#16 - Refactor fallback strategies and add test

Pull Request - State: closed - Opened by konstin over 4 years ago

#15 - Add Dockerfile and github actions

Pull Request - State: closed - Opened by konstin over 4 years ago

#13 - Selecting npz writes wrongly nested data

Issue - State: closed - Opened by konstin over 4 years ago - 1 comment

#12 - Call process_embedding after single_sequence_processing

Pull Request - State: closed - Opened by konstin over 4 years ago

#11 - Install error

Issue - State: closed - Opened by pkerpedjiev over 4 years ago - 4 comments

#10 - Out of memory error for >50k sequences

Issue - State: closed - Opened by mortonjt over 4 years ago - 2 comments
Labels: enhancement

#9 - Update SeqVec Dependencies and Improve Test Configurability

Pull Request - State: closed - Opened by t03i over 4 years ago

#8 - Fix boolean argument parsing

Pull Request - State: closed - Opened by konstin almost 5 years ago

#7 - Handle failed sequences better

Pull Request - State: closed - Opened by konstin almost 5 years ago - 1 comment

#6 - Re-Add npz output and add an option not to sum up the layers

Pull Request - State: closed - Opened by konstin about 5 years ago - 3 comments

#5 - Make a python package out of the embedder script

Pull Request - State: closed - Opened by konstin about 5 years ago

#4 - Bring RL up to speed

Pull Request - State: closed - Opened by sacdallago about 5 years ago

#3 - Add embedding script

Pull Request - State: closed - Opened by mheinzinger about 5 years ago

#2 - Add ELMo checkpoint files + short explanation of batch processing

Pull Request - State: closed - Opened by mheinzinger about 5 years ago

#1 - Update README.md

Pull Request - State: closed - Opened by mheinzinger over 5 years ago