Ecosyste.ms: Issues

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GitHub / Rosemeis/pcangsd issues and pull requests

#31 - dropping samples function?

Issue - State: open - Opened by devonorourke over 4 years ago - 3 comments

#30 - pop.info file - order of samples?

Issue - State: closed - Opened by TeresaPegan over 4 years ago - 2 comments

#29 - pcangsd inbreedSites fails

Issue - State: closed - Opened by jonaszierer almost 5 years ago - 5 comments

#29 - pcangsd inbreedSites fails

Issue - State: closed - Opened by jonaszierer almost 5 years ago - 5 comments

#28 - How to get PCs from the covariance matrix

Issue - State: closed - Opened by clairemerot almost 5 years ago - 1 comment

#28 - How to get PCs from the covariance matrix

Issue - State: closed - Opened by clairemerot almost 5 years ago - 1 comment

#26 - ZeroDivisionError: float division

Issue - State: closed - Opened by zyxplus almost 5 years ago - 5 comments

#25 - ValueError: ndarray is not C-contiguous

Issue - State: closed - Opened by debjyoti88 almost 5 years ago - 2 comments

#25 - ValueError: ndarray is not C-contiguous

Issue - State: closed - Opened by debjyoti88 almost 5 years ago - 2 comments

#24 - negative dimensions are not allowed

Issue - State: closed - Opened by zyxplus almost 5 years ago - 3 comments

#24 - negative dimensions are not allowed

Issue - State: closed - Opened by zyxplus almost 5 years ago - 3 comments

#23 - Can linked sites influence pcangsd result?

Issue - State: closed - Opened by biozzq almost 5 years ago - 2 comments

#22 - specify a region on which pcangsd will run

Issue - State: closed - Opened by clairemerot about 5 years ago - 2 comments

#22 - specify a region on which pcangsd will run

Issue - State: closed - Opened by clairemerot about 5 years ago - 2 comments

#21 - Segmentation fault estimating covariance matrix

Issue - State: closed - Opened by OliverPStuart about 5 years ago - 5 comments

#20 - Clarification regarding format of the covariance matrix for V0.98

Issue - State: closed - Opened by albinap about 5 years ago - 5 comments

#20 - Clarification regarding format of the covariance matrix for V0.98

Issue - State: closed - Opened by albinap about 5 years ago - 5 comments

#19 - Feature request: option to select a subset of individuals

Issue - State: closed - Opened by ariloytynoja about 5 years ago - 2 comments

#19 - Feature request: option to select a subset of individuals

Issue - State: closed - Opened by ariloytynoja about 5 years ago - 2 comments

#18 - Single-precision types in `eigs` and `eighs`

Issue - State: closed - Opened by sunnvor about 5 years ago - 2 comments

#17 - command error during selection scan

Issue - State: closed - Opened by Callithrix-omics over 5 years ago - 1 comment

#16 - PCAngsd npy matrix not working in R

Issue - State: closed - Opened by Giovannino1984 over 5 years ago - 1 comment

#16 - PCAngsd npy matrix not working in R

Issue - State: closed - Opened by Giovannino1984 over 5 years ago - 1 comment

#15 - -sites_save not printing correctly?

Issue - State: closed - Opened by alexpiper almost 6 years ago - 2 comments

#15 - -sites_save not printing correctly?

Issue - State: closed - Opened by alexpiper almost 6 years ago - 2 comments

#14 - Genotype calling error?

Issue - State: closed - Opened by brunoasm almost 6 years ago - 2 comments

#14 - Genotype calling error?

Issue - State: closed - Opened by brunoasm almost 6 years ago - 2 comments

#13 - Inferring per-individual inbreeding coefficients between very distant species

Issue - State: closed - Opened by Gongmian784 almost 6 years ago - 3 comments

#13 - Inferring per-individual inbreeding coefficients between very distant species

Issue - State: closed - Opened by Gongmian784 almost 6 years ago - 3 comments

#12 - Error pcangsd.py cannot copy sequence to array

Issue - State: closed - Opened by jdaron almost 6 years ago - 1 comment

#12 - Error pcangsd.py cannot copy sequence to array

Issue - State: closed - Opened by jdaron almost 6 years ago - 1 comment

#11 - diagonal of kinship matrix

Issue - State: closed - Opened by ovidp about 6 years ago - 1 comment

#10 - Allow running admixture analysis with multiple K in one run

Pull Request - State: open - Opened by kdm9 over 6 years ago - 2 comments

#10 - Allow running admixture analysis with multiple K in one run

Pull Request - State: open - Opened by kdm9 over 6 years ago - 2 comments

#9 - Fix -allocate_sites with beagle

Pull Request - State: closed - Opened by kdm9 over 6 years ago

#8 - Empty string "" in various outputs

Issue - State: closed - Opened by kdm9 over 6 years ago - 2 comments

#7 - error when sample size smaller than 15

Issue - State: closed - Opened by biozzq over 6 years ago - 9 comments

#7 - error when sample size smaller than 15

Issue - State: closed - Opened by biozzq over 6 years ago - 9 comments

#6 - readgzipbeagle index error

Issue - State: closed - Opened by biozzq over 6 years ago - 2 comments

#6 - readgzipbeagle index error

Issue - State: closed - Opened by biozzq over 6 years ago - 2 comments

#5 - Invalid syntax running issue

Issue - State: closed - Opened by gmkov over 6 years ago - 1 comment

#5 - Invalid syntax running issue

Issue - State: closed - Opened by gmkov over 6 years ago - 1 comment

#4 - Citation information

Issue - State: closed - Opened by dwinter over 6 years ago - 2 comments

#3 - pcangsd.py -h fails with numba error

Issue - State: closed - Opened by samfux84 over 6 years ago - 2 comments

#2 - NameError: global name 'rmse' is not defined

Issue - State: closed - Opened by silvewheat almost 7 years ago - 1 comment

#2 - NameError: global name 'rmse' is not defined

Issue - State: closed - Opened by silvewheat almost 7 years ago - 1 comment

#1 - how to get the eigenvector and eigenvalue?

Issue - State: closed - Opened by silvewheat about 7 years ago - 1 comment

#1 - how to get the eigenvector and eigenvalue?

Issue - State: closed - Opened by silvewheat about 7 years ago - 1 comment