Ecosyste.ms: Issues

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GitHub / Robaina/Phycogem issues and pull requests

#14 - Survey MAGs for enzyme representation before reconstruction?

Issue - State: open - Opened by Robaina 12 months ago
Labels: enhancement

#13 - Expand universal databases

Issue - State: open - Opened by Robaina about 1 year ago
Labels: enhancement

#12 - Test alternative, open-source MIP solvers in SMETANA

Issue - State: open - Opened by Robaina about 1 year ago
Labels: enhancement

#11 - Implement logger

Issue - State: open - Opened by Robaina about 1 year ago
Labels: enhancement

#10 - Update SMETANA to find minimal clusters?

Issue - State: open - Opened by Robaina about 1 year ago
Labels: enhancement

#9 - Remove duplicated reactions by met set after taxon-specific reconstruction

Issue - State: open - Opened by Robaina about 1 year ago
Labels: enhancement

#8 - Build minimal POC

Issue - State: open - Opened by Robaina about 1 year ago
Labels: documentation, enhancement

#7 - Elaborate docs and jupyter notebooks

Issue - State: closed - Opened by Robaina about 1 year ago
Labels: documentation

#5 - Check for futile energy cycles on taxa-specific reconstructions

Issue - State: closed - Opened by Robaina about 1 year ago - 1 comment
Labels: enhancement

#4 - Create updated universal models for bacteria, archaea, grampos, gramneg, and cyanobacteria

Issue - State: open - Opened by Robaina about 1 year ago
Labels: enhancement

#3 - Check CarveME's universal model curation pipeline

Issue - State: closed - Opened by Robaina about 1 year ago
Labels: enhancement

#2 - No chemical formulas in universal prokaryote model

Issue - State: closed - Opened by Robaina about 1 year ago - 1 comment
Labels: bug

#1 - Group functions into a Model class

Issue - State: closed - Opened by Robaina about 1 year ago
Labels: enhancement