Ecosyste.ms: Issues

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GitHub / RforMassSpectrometry/MsExperiment issues and pull requests

#44 - Error when replacing spectra with the same subsetted wpectra.

Issue - State: open - Opened by philouail 15 days ago - 1 comment

#43 - feat: add spectraSampleIndex function

Pull Request - State: closed - Opened by jorainer 11 months ago - 1 comment

#42 - feat: add filterSpectra function (issue #41)

Pull Request - State: closed - Opened by jorainer about 1 year ago - 4 comments

#41 - Add a filterSpectra method

Issue - State: open - Opened by jorainer about 1 year ago

#40 - Store/retrieve sample data from SQL database

Pull Request - State: closed - Opened by jorainer over 1 year ago - 2 comments

#39 - Import MsExperiment from SQL database/modify MsExperiment constructor

Issue - State: closed - Opened by jorainer over 1 year ago - 1 comment

#38 - Fix subset with negative indices

Pull Request - State: closed - Opened by jorainer over 1 year ago - 1 comment

#37 - Susbetting using "-"

Issue - State: closed - Opened by philouail over 1 year ago - 2 comments
Labels: bug

#36 - fix/improve show and new otherData get/set functions

Pull Request - State: closed - Opened by lgatto almost 2 years ago - 3 comments

#35 - fix: unit test for readMsExperiment (issue #34)

Pull Request - State: closed - Opened by jorainer almost 2 years ago

#34 - Fix error on BioC build system

Issue - State: closed - Opened by jorainer almost 2 years ago - 1 comment

#33 - feat: add readMsExperiment (issue #32)

Pull Request - State: closed - Opened by jorainer about 2 years ago - 3 comments

#32 - Easier way to import (spectra) data from an experiment

Issue - State: closed - Opened by jorainer about 2 years ago - 11 comments

#31 - refactor: use grr::matches do match data to samples

Pull Request - State: closed - Opened by jorainer about 2 years ago - 3 comments

#30 - filterRt and other filter functions - which data set to filter?

Issue - State: open - Opened by jorainer over 2 years ago - 3 comments

#29 - fix: remove MsExperimentFiles_OR_Null class union

Pull Request - State: closed - Opened by lgatto over 2 years ago

#28 - First fixes for the package review

Pull Request - State: closed - Opened by jorainer over 2 years ago - 1 comment

#27 - Prepare package for submission to Bioconductor

Pull Request - State: closed - Opened by jorainer over 2 years ago

#26 - Accessor for the @assay slot

Issue - State: closed - Opened by jorainer almost 3 years ago

#25 - Updates to CI

Pull Request - State: closed - Opened by jorainer almost 3 years ago

#24 - Bioconductor submission?

Issue - State: closed - Opened by jorainer almost 3 years ago - 5 comments

#23 - add pkg logo

Pull Request - State: closed - Opened by lgatto over 3 years ago

#22 - data replacement should replace links?

Issue - State: open - Opened by jorainer almost 4 years ago - 1 comment

#21 - Renaming qfeatures slot?

Issue - State: closed - Opened by lgatto almost 4 years ago - 4 comments

#20 - feat: qfeatures can now be NULL, a SummarizedExperiment or a QFeature…

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#19 - Support sample-to-data-element links

Pull Request - State: closed - Opened by jorainer almost 4 years ago - 6 comments

#18 - otherData and sampledata slots

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#17 - Use case: manage experiment and sample associations

Issue - State: closed - Opened by jorainer almost 4 years ago - 12 comments

#16 - Merge from lgatto@main

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#15 - docs: add MSGF+ cmd to vignette

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#14 - feat: new existMsExperimentFiles() function

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#13 - MsExperiment devel call

Issue - State: closed - Opened by lgatto almost 4 years ago - 2 comments

#12 - add sticker

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#11 - add QFeatures slot

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#10 - Update vignette

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#9 - Add initial vignette

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#8 - Use CharacterList for MsExperimentFiles

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#7 - Merge latest updates from main@lgatto

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#6 - merge lgatto master

Pull Request - State: closed - Opened by lgatto almost 4 years ago

#5 - Follow renaming of QFeatures ?

Issue - State: closed - Opened by sneumann over 4 years ago - 3 comments

#4 - typo

Pull Request - State: closed - Opened by stanstrup about 5 years ago

#3 - readMSData-like constructor

Issue - State: closed - Opened by lgatto over 5 years ago - 4 comments

#2 - Filtering and subsetting of MsExperiment

Issue - State: closed - Opened by jorainer over 5 years ago - 1 comment

#1 - MsExperiment class definition

Issue - State: closed - Opened by jorainer over 5 years ago - 1 comment