Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ResearchObject/runcrate issues and pull requests
#82 - convert almost all of setup.cfg to pyproject.toml using ini2toml.
Pull Request -
State: closed - Opened by mr-c 3 months ago
- 2 comments
#81 - Bump cwl utils in setup.cfg
Pull Request -
State: closed - Opened by simleo 3 months ago
- 1 comment
#80 - Bump cwl-utils from 0.32 to 0.33
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 2 comments
Labels: dependencies, python
#79 - Bump peaceiris/actions-gh-pages from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, github_actions
#78 - Bump networkx from 3.1 to 3.3
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 2 comments
Labels: dependencies, python
#77 - Support for ExpressionTool in convert
Issue -
State: open - Opened by simleo 3 months ago
- 1 comment
Labels: enhancement
#76 - Fix failing conversion if author name is not set
Pull Request -
State: closed - Opened by dnlbauer 3 months ago
- 3 comments
#75 - Bump codecov/codecov-action from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, github_actions
#74 - Bump actions/setup-python from 4 to 5
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
- 1 comment
Labels: dependencies, github_actions
#73 - Bump cwl-utils from 0.31 to 0.32
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
- 2 comments
Labels: dependencies, python
#72 - Convert SoftwareRequirement
Pull Request -
State: closed - Opened by simleo 7 months ago
- 1 comment
#71 - Bump cwl-utils from 0.29 to 0.31
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 1 comment
Labels: dependencies, python
#70 - Convert encoding format for output files
Pull Request -
State: closed - Opened by simleo 8 months ago
- 1 comment
#69 - More file metadata
Pull Request -
State: closed - Opened by simleo 8 months ago
#68 - Bump cwl-utils from 0.29 to 0.30
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 1 comment
Labels: dependencies, python
#67 - upgrade to cwl-utils 0.30
Pull Request -
State: closed - Opened by mr-c 8 months ago
- 1 comment
#66 - Add ContainerImage
Pull Request -
State: closed - Opened by simleo 8 months ago
- 4 comments
#65 - Bump networkx from 3.1 to 3.2.1
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies, python
#64 - Bump networkx from 3.1 to 3.2
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 2 comments
Labels: dependencies, python
#63 - convert: add whole workflow-run context to the crate
Pull Request -
State: closed - Opened by simleo 9 months ago
- 1 comment
#62 - Update rocrate requirement from ~=0.8 to ~=0.9
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 1 comment
Labels: dependencies, python
#61 - report: do not expect input and output to be lists
Pull Request -
State: closed - Opened by simleo 9 months ago
- 1 comment
#60 - Set codecov-action back to v3
Pull Request -
State: closed - Opened by simleo 9 months ago
- 1 comment
#59 - Bump codecov/codecov-action from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, github_actions
#58 - Bump actions/checkout from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies, github_actions
#57 - Get data paths from manifest
Pull Request -
State: closed - Opened by simleo about 1 year ago
- 1 comment
#56 - manifest lookup for path
Pull Request -
State: closed - Opened by jjkoehorst about 1 year ago
- 1 comment
#55 - Basedir for data files
Issue -
State: open - Opened by jjkoehorst about 1 year ago
- 1 comment
#54 - Data locations using manifest file
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
- 1 comment
#53 - Error from runcrate convert
Issue -
State: open - Opened by HrishiDhondge about 1 year ago
- 2 comments
#52 - Support for inline tools
Pull Request -
State: closed - Opened by simleo about 1 year ago
#51 - Run: option to download remote inputs
Issue -
State: open - Opened by simleo about 1 year ago
#50 - run: don't break if alternateName is same as id
Pull Request -
State: closed - Opened by simleo about 1 year ago
- 1 comment
#49 - AttributeError: 'CommandLineTool' object has no attribute 'rsplit'
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
- 1 comment
#48 - Run module: fix check_runnable
Pull Request -
State: closed - Opened by simleo about 1 year ago
#47 - Update rocrate requirement from ~=0.7 to ~=0.8
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies, python
#46 - Option to remap data entity names
Pull Request -
State: open - Opened by simleo about 1 year ago
- 7 comments
#45 - Fix crash related to skipped subworkflows
Pull Request -
State: closed - Opened by simleo about 1 year ago
- 1 comment
#44 - Bump networkx from 2.8 to 3.1
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies, python
#43 - Handle outputs with multiple output sources
Pull Request -
State: closed - Opened by simleo about 1 year ago
- 1 comment
#42 - Filenames not in ro-crate-metadata.json
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
- 4 comments
#41 - KeyError: 'fastqc.cwl' while cwl file is in the provenance folder
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
- 4 comments
#40 - Unpin & upgrade cwl-utils version
Pull Request -
State: closed - Opened by mr-c about 1 year ago
- 7 comments
#39 - schema_salad.exceptions.ValidationException tried...
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
- 1 comment
#38 - Handle step input mappings with no source
Pull Request -
State: closed - Opened by simleo about 1 year ago
#37 - Fix convert_cwl_type
Pull Request -
State: closed - Opened by simleo about 1 year ago
- 1 comment
#36 - Bug in cwltool results in packed.cwl but no individual cwl files
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
- 2 comments
#35 - Bag validation failed: data/.DS_Store exists on filesystem but is not in the manifest
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
- 1 comment
Labels: invalid
#34 - Option to make data files more user friendly
Issue -
State: open - Opened by jjkoehorst about 1 year ago
- 2 comments
#33 - AttributeError: 'NoneType' object has no attribute 'rsplit'
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
- 6 comments
#32 - KeyError: <cwl_utils.parser.cwl_v1_2.CommandInputEnumSchema object at 0x10aa191e0> ?
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
#31 - Handle multi source step inputs
Pull Request -
State: closed - Opened by simleo about 1 year ago
- 1 comment
#30 - Convert CWLProv to RO - TypeError: unhashable type: 'list'
Issue -
State: closed - Opened by jjkoehorst about 1 year ago
#29 - Convert cwl label, doc and intent
Pull Request -
State: closed - Opened by simleo about 1 year ago
#28 - Add memoryRequirements to tools
Pull Request -
State: closed - Opened by simleo about 1 year ago
- 1 comment
#27 - run: Support list of files/dirs in PropertyValue
Pull Request -
State: closed - Opened by simleo about 1 year ago
- 1 comment
#26 - Handle distinct directories with same content
Issue -
State: open - Opened by simleo about 1 year ago
Labels: enhancement
#25 - convert: add input object document
Pull Request -
State: closed - Opened by simleo about 1 year ago
- 3 comments
#24 - Run module
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 2 comments
#23 - Fix context extra terms
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#22 - Set param names to those expected by CWL
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#21 - runcrate report: dump all actions
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#20 - Convert module
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#19 - Enhancements for report
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#18 - Move tools/consume_crate functionality to runcrate CLI
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#17 - WIP: ShEx validation method
Pull Request -
State: open - Opened by stain over 1 year ago
- 1 comment
#16 - Fix exampleOfWork duplicates
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#15 - convert: add more metadata
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 2 comments
#14 - CWLProv conversion: add profile conformance
Issue -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#13 - CWLProv conversion: include creation datetime, size, checksum, format
Issue -
State: closed - Opened by simleo over 1 year ago
#12 - Error from runcrate-analysis, scenario 4_a
Issue -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#11 - Error from runcrate-analysis, scenario 2_a
Issue -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#10 - CWLProv conversion: include doc, label, intent
Issue -
State: closed - Opened by simleo over 1 year ago
#9 - CWLProv conversion: include primary-job.json
Issue -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#8 - CWLProv conversion: convert basename
Issue -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#7 - Fix handling of default file or dir in params
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#6 - Support for nested I/O directories
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#5 - Support for secondary files
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#4 - Add CLI
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#3 - Clean up the Tox configuration
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#2 - Docs setup
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment
#1 - Handle "cwlprov:None" parameters
Pull Request -
State: closed - Opened by simleo over 1 year ago
- 1 comment