ReproNim/neurodocker issues and pull requests

#407 - Add option to install CAT12

Issue - State: closed - Opened by JohannesWiesner over 3 years ago - 9 comments
Labels: CAT12, stale

#406 - FSL Version 6.04 maybe missing files using docker run --rm repronim/neurodocker:master generate singularity

Issue - State: closed - Opened by vzachari over 3 years ago - 5 comments
Labels: FSL, stale

#405 - Minify error : Not running in a Docker Container

Issue - State: closed - Opened by axlbonnet over 3 years ago - 7 comments
Labels: minify, stale

#404 - Wrong URL for SPM and missing library

Issue - State: closed - Opened by arovai over 3 years ago - 3 comments
Labels: SPM, stale

#403 - Libxp6 pre-depends on multiarch-support

Issue - State: closed - Opened by N-Accumbens over 3 years ago - 6 comments
Labels: stale

#402 - Use pigz instead of gzip by default?

Issue - State: closed - Opened by N-Accumbens almost 4 years ago - 6 comments
Labels: stale

#398 - Adding Fuzzy to Neurodocker

Issue - State: open - Opened by gkiar almost 4 years ago - 5 comments
Labels: enhancement, stale

#397 - AFNI versions

Issue - State: closed - Opened by djarecka almost 4 years ago - 3 comments
Labels: question, AFNI, stale

#396 - freesurfer 6.0.0 minimal installation

Issue - State: closed - Opened by zswgzx almost 4 years ago - 13 comments
Labels: Freesurfer, stale

#395 - Simple use case examples to resolve #373

Pull Request - State: open - Opened by jakepalmer almost 4 years ago - 4 comments

#394 - consider including mcr version in spm12 version

Issue - State: closed - Opened by kaczmarj almost 4 years ago - 2 comments
Labels: SPM, MATLAB, stale

#393 - How is MCR version chosen based on SPM12

Issue - State: closed - Opened by JohannesWiesner almost 4 years ago - 5 comments
Labels: SPM, MATLAB

#389 - Ensure calls to `ldconfig` are executed towards the end of `build` specifications

Issue - State: closed - Opened by shnizzedy almost 4 years ago - 8 comments
Labels: stale

#388 - curl: (60) SSL certificate problem: unable to get local issuer certificate

Issue - State: closed - Opened by JohannesWiesner almost 4 years ago - 11 comments

#387 - Support for multi-stage builds in reproenv

Issue - State: closed - Opened by aswinnarayanan almost 4 years ago - 4 comments

#386 - add tests for all templates

Pull Request - State: closed - Opened by kaczmarj almost 4 years ago - 1 comment

#384 - fix parallel problem and quantifyThalamicNuclei.sh

Pull Request - State: closed - Opened by AndysWorth almost 4 years ago - 16 comments

#383 - parse neurodocker.json of neurodocker base images

Issue - State: closed - Opened by kaczmarj almost 4 years ago - 1 comment
Labels: stale

#375 - VNC Not Starting Up Properly?

Issue - State: closed - Opened by N-Accumbens about 4 years ago - 8 comments

#373 - Simple Use Cases

Issue - State: closed - Opened by dbkeator about 4 years ago - 3 comments
Labels: enhancement, stale

#360 - add Neurodocker to open-neuroscience.com

Issue - State: closed - Opened by amchagas over 4 years ago - 6 comments
Labels: stale

#358 - SPM12 is not working

Issue - State: closed - Opened by fsmMLK over 4 years ago - 15 comments
Labels: SPM, stale

#357 - singularity container for brainiak

Issue - State: closed - Opened by peetal over 4 years ago - 10 comments

#354 - Conda env does not activate at start even if activate=true

Issue - State: closed - Opened by jsmentch almost 5 years ago - 8 comments
Labels: conda

#351 - fix freeview

Pull Request - State: closed - Opened by stebo85 almost 5 years ago - 10 comments

#349 - enabled mrview gui

Pull Request - State: closed - Opened by stebo85 almost 5 years ago - 8 comments

#348 - installing minc from deb packages + mesa-drivers for register + extra…

Pull Request - State: closed - Opened by stebo85 almost 5 years ago - 5 comments

#347 - + su - root stdin: is not a tty

Issue - State: closed - Opened by yarikoptic almost 5 years ago - 3 comments

#345 - AFNI problem when installing all R packages

Issue - State: closed - Opened by verdurin almost 5 years ago - 17 comments

#343 - OpenGL support when using `--vnc`

Issue - State: closed - Opened by pwighton almost 5 years ago - 9 comments

#338 - MRtrix 3

Issue - State: closed - Opened by araikes almost 5 years ago - 6 comments

#337 - Add MCR to Freesurfer installation

Issue - State: closed - Opened by kaczmarj almost 5 years ago - 7 comments
Labels: help wanted, MATLAB, stale

#321 - Perl issue in fresurfer

Issue - State: closed - Opened by DimuthuHemachandra almost 5 years ago - 15 comments
Labels: Freesurfer, stale

#318 - centos:7 does not include libquadmath

Issue - State: closed - Opened by dmd about 5 years ago - 2 comments

#317 - centos:7 does not include the 'which' command

Issue - State: closed - Opened by dmd about 5 years ago - 4 comments

#316 - Failed to open fsleyes

Issue - State: closed - Opened by Joshuaalbert about 5 years ago - 3 comments
Labels: FSL

#314 - miniconda and singularity: Function Not Implemented

Issue - State: closed - Opened by jdkent about 5 years ago - 1 comment
Labels: conda, singularity

#313 - AFNI build failing because R_io.so target fails

Issue - State: closed - Opened by verdurin about 5 years ago - 2 comments

#311 - Error while minimizing bids/freesurfer

Issue - State: closed - Opened by kaurbhupinder about 5 years ago - 4 comments
Labels: Freesurfer, minify

#310 - using neurodocker from python code

Issue - State: closed - Opened by djarecka about 5 years ago - 1 comment

#307 - NeuroDocker install new packages inside the image

Issue - State: closed - Opened by kaurbhupinder over 5 years ago - 5 comments

#293 - Make it possible to use eatmydata for at least apt

Issue - State: closed - Opened by yarikoptic over 5 years ago - 6 comments
Labels: stale

#290 - No Java Runtime Environment(JRE) was found on this system.

Issue - State: closed - Opened by mianasbat over 5 years ago - 18 comments

#285 - Freesurfer 6.0.0-min missing files for recon-all -all

Issue - State: closed - Opened by frandorr over 5 years ago - 4 comments

#281 - afni fails on example due to missing branch latest

Issue - State: closed - Opened by ddwagner almost 6 years ago - 2 comments

#279 - [wishlist] add recipe for dsi studio

Issue - State: closed - Opened by yarikoptic almost 6 years ago - 2 comments
Labels: help wanted

#276 - [wishlist] add recipe for camino

Issue - State: closed - Opened by yarikoptic almost 6 years ago - 1 comment
Labels: help wanted

#275 - [wishlist] add recipe for mango

Issue - State: closed - Opened by yarikoptic almost 6 years ago - 1 comment

#274 - At least some minimal website/landing page

Issue - State: closed - Opened by yarikoptic almost 6 years ago - 3 comments
Labels: help wanted

#267 - add non-neurodebian example for FSL to examples/fsl

Issue - State: closed - Opened by yarikoptic almost 6 years ago - 1 comment

#263 - Support reproseed

Issue - State: closed - Opened by yarikoptic almost 6 years ago - 2 comments
Labels: stale

#256 - FSL environment variables

Issue - State: closed - Opened by vinferrer about 6 years ago - 2 comments

#252 - BUGS: use a neurodocker base image does not work in certain cases

Issue - State: closed - Opened by kaczmarj about 6 years ago - 1 comment

#251 - BUG: using neurodocker base image with miniconda breaks

Issue - State: closed - Opened by kaczmarj about 6 years ago - 5 comments
Labels: conda, stale

#242 - startup.sh vs .singularity.d/env/ as a way to do environment vars setup

Issue - State: closed - Opened by yarikoptic about 6 years ago - 3 comments
Labels: singularity, stale

#237 - [wishlist] apt build-dep and source support

Issue - State: closed - Opened by yarikoptic over 6 years ago - 6 comments
Labels: stale

#232 - Creation of a detailed software summary within the docker image

Issue - State: closed - Opened by miykael over 6 years ago - 4 comments

#225 - Brainsuite

Issue - State: closed - Opened by infinitejest over 6 years ago - 1 comment
Labels: help wanted, feature request

#213 - Please include in the header (or trailer) of the generated file the original cmdline args used to generate it

Issue - State: closed - Opened by yarikoptic over 6 years ago - 6 comments
Labels: enhancement, help wanted, stale

#208 - Add Guacamole

Issue - State: closed - Opened by kaczmarj over 6 years ago - 2 comments
Labels: enhancement, help wanted, stale

#192 - new minc version

Issue - State: closed - Opened by stebo85 over 6 years ago - 8 comments

#178 - create a version recipe for recreating the container

Issue - State: closed - Opened by satra over 6 years ago - 2 comments
Labels: stale

#172 - ADD: freesurfer build from source

Issue - State: closed - Opened by kaczmarj almost 7 years ago - 5 comments
Labels: enhancement, help wanted, Freesurfer, stale

#114 - FreeSurfer 6.0.1

Issue - State: closed - Opened by effigies over 7 years ago - 7 comments
Labels: Freesurfer

GitHub / ReproNim/neurodocker issues and pull requests