Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ReproNim/neurodocker issues and pull requests

#661 - reverting ' ' around nii.gz because it wasn't working

Pull Request - State: closed - Opened by stebo85 17 days ago

#660 - Update freesurfer.yaml

Pull Request - State: closed - Opened by stebo85 17 days ago

#659 - add fsl 6.0.7.16

Pull Request - State: closed - Opened by stebo85 20 days ago

#658 - [BOT] update pre-commit hooks

Pull Request - State: open - Opened by github-actions[bot] 24 days ago

#657 - Minifiy broken due to miniforge change

Issue - State: open - Opened by Lestropie 28 days ago - 1 comment

#656 - NeuroDocker check ReproNim/containers

Issue - State: open - Opened by dnkennedy about 1 month ago

#655 - [MAINT] bump version of base image we test against

Pull Request - State: closed - Opened by Remi-Gau about 1 month ago - 2 comments

#654 - Fix Centos outdated mirror link

Pull Request - State: open - Opened by iishiishii about 1 month ago - 1 comment

#653 - Unable to find a match: localedef

Issue - State: open - Opened by iishiishii about 1 month ago - 2 comments

#652 - Consider adding a "ReproNim Configuration Flag"

Issue - State: open - Opened by dnkennedy about 1 month ago - 2 comments

#651 - ref: use org secret and bump base images and toolkits

Pull Request - State: open - Opened by satra about 1 month ago

#650 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 4 months ago

#649 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 4 months ago

#648 - add fsl 6.0.7.14

Pull Request - State: closed - Opened by stebo85 4 months ago

#647 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 4 months ago

#646 - [MAINT] Drop python 3.8 and support 3.13

Pull Request - State: closed - Opened by Remi-Gau 4 months ago

#645 - master branch being renamed to main

Issue - State: closed - Opened by Remi-Gau 4 months ago - 3 comments
Labels: stale

#644 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago

#643 - Update matlabmcr.yaml R2023b to Update 9

Pull Request - State: closed - Opened by stebo85 5 months ago

#642 - add new FSL version

Pull Request - State: closed - Opened by stebo85 5 months ago

#641 - Bump peter-evans/create-pull-request from 6 to 7

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: major, dependencies

#640 - repronim:neurodocker/latest on dockerhub doesn't point to the latest version

Issue - State: closed - Opened by mvdoc 6 months ago - 2 comments
Labels: stale

#639 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago

#637 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago

#636 - [MAINT] drop types all from pre-commit config

Pull Request - State: closed - Opened by Remi-Gau 7 months ago

#635 - Can't install ANTs using Neurodocker due to Dropbox link error 403

Issue - State: open - Opened by astewartau 7 months ago - 12 comments
Labels: stale

#634 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#633 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#632 - Consider using the Apptainer install github action

Issue - State: closed - Opened by Remi-Gau 7 months ago - 2 comments
Labels: stale

#631 - Fix typo in CHANGELOG.md to pacify codespell

Pull Request - State: closed - Opened by Remi-Gau 7 months ago - 1 comment

#630 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#629 - Do not attempt to use sudo if would demand password

Issue - State: closed - Opened by yarikoptic 8 months ago - 2 comments
Labels: stale

#628 - `test_build_image_from_registered` failing

Issue - State: closed - Opened by mvdoc 8 months ago - 2 comments

#627 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#624 - Fix typo of "softwares"

Pull Request - State: closed - Opened by yarikoptic 8 months ago - 1 comment

#623 - FIX add default header and entrypoint to docker and singularity files

Pull Request - State: closed - Opened by mvdoc 8 months ago - 6 comments
Labels: patch

#622 - FIX remove comment from freesurfer env line

Pull Request - State: closed - Opened by mvdoc 8 months ago
Labels: patch

#621 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#619 - Automate docker images builds/deposition to hub

Issue - State: closed - Opened by yarikoptic 8 months ago - 7 comments
Labels: stale

#618 - Congrats to everyone -- we released 1.0.0 (watch the labels!)

Issue - State: closed - Opened by yarikoptic 8 months ago - 2 comments

#617 - Upgrade intuit auto to 11.1.6 (most recent)

Pull Request - State: closed - Opened by yarikoptic 8 months ago - 1 comment
Labels: release, internal

#616 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago

#615 - make scripts executable after build

Pull Request - State: closed - Opened by stebo85 10 months ago

#614 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago

#613 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago

#612 - Use HTTPS for NeuroDebian APT listing urls

Pull Request - State: closed - Opened by TheChymera 10 months ago
Labels: patch

#611 - [WiP] Draft for Gentoo configuration

Pull Request - State: open - Opened by TheChymera 10 months ago - 21 comments

#610 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago

#609 - [FIX] Update branch in update_precommit_hooks.yml

Pull Request - State: closed - Opened by Remi-Gau 11 months ago

#608 - pre-commit autoupdate fails

Issue - State: closed - Opened by Remi-Gau 11 months ago - 2 comments
Labels: stale

#607 - [ENH] package with hatchling and switch to pyproject.toml

Pull Request - State: closed - Opened by Remi-Gau 11 months ago - 2 comments

#606 - failure of the auto-release workflow

Issue - State: closed - Opened by Remi-Gau 11 months ago - 2 comments

#605 - modernize packaging

Issue - State: closed - Opened by Remi-Gau 11 months ago

#604 - [MAINT] update linting config and CI

Pull Request - State: closed - Opened by Remi-Gau 11 months ago - 5 comments

#603 - update CI for "linting"

Issue - State: closed - Opened by Remi-Gau 11 months ago

#602 - gentoo support

Issue - State: closed - Opened by yarikoptic 11 months ago - 4 comments
Labels: stale

#601 - Attempt to adjust template for AFNI binary to make it work on Debian

Pull Request - State: open - Opened by yarikoptic 11 months ago - 7 comments

#600 - Add support for versioned binary installs of AFNI

Issue - State: closed - Opened by yarikoptic 11 months ago - 4 comments
Labels: stale

#599 - Update docker image and pip versions to latest

Issue - State: closed - Opened by ddwagner about 1 year ago - 3 comments
Labels: stale

#598 - fixed flake8 errors from #597

Pull Request - State: closed - Opened by Vbitz about 1 year ago - 1 comment

#597 - Added "--add" command line option to add tar files as docker layers.

Pull Request - State: closed - Opened by Vbitz about 1 year ago

#596 - Error when trying to add output filename during generate docker command

Issue - State: closed - Opened by switt4 about 1 year ago - 2 comments

#595 - Bump actions/stale from 8 to 9

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#594 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#593 - added versions to Library PATH

Pull Request - State: closed - Opened by stebo85 over 1 year ago

#592 - update matlabmcr

Pull Request - State: closed - Opened by stebo85 over 1 year ago

#591 - [FIX] add url bids validator

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 1 comment

#590 - jq from source fails

Issue - State: open - Opened by Remi-Gau over 1 year ago - 2 comments
Labels: stale

#589 - [MAINT] test build jq

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 2 comments

#588 - [ENH] test on python 3.12

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 2 comments

#587 - [DOC] add list of supported softwares

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 3 comments

#586 - [ENH] add templates bids_validator

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 8 comments

#585 - AFNI recipe does not work correctly in Singularity build

Issue - State: open - Opened by stebo85 over 1 year ago - 5 comments
Labels: stale

#584 - can't build afni with R

Issue - State: closed - Opened by andreifoldes over 1 year ago - 7 comments

#583 - Update fsl.yaml

Pull Request - State: closed - Opened by stebo85 over 1 year ago

#582 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: major, dependencies

#581 - fix nipype example

Issue - State: open - Opened by Remi-Gau over 1 year ago - 1 comment
Labels: stale

#580 - [DOC] add a table of supported softwares

Issue - State: closed - Opened by Remi-Gau over 1 year ago

#579 - [ENH] implement more recent mrtrix version

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 5 comments

#578 - Update examples.rst

Pull Request - State: closed - Opened by stebo85 over 1 year ago

#577 - [MAINT] Update stale.yml

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago

#576 - added FSL interactivity note

Pull Request - State: closed - Opened by stebo85 over 1 year ago - 1 comment

#575 - Include FSL license auto-yes example

Pull Request - State: closed - Opened by stebo85 over 1 year ago - 4 comments

#574 - [FIX] install the proper dependencies for doc build

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 1 comment

#573 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: major, dependencies

#572 - [FIX] use local var for software name in bootstrap workflow

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago

#571 - [FIX] use env variable in bootstrap workflow

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago

#570 - [INFRA] add possibility to only build a single workflow

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 4 comments

#569 - [DOC] update doc

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 5 comments

#568 - Ensure examples in doc can actually build

Issue - State: closed - Opened by Remi-Gau over 1 year ago
Labels: documentation

#567 - add possibility to only "dispatch" the bootstrap workflow for a given software

Issue - State: closed - Opened by Remi-Gau over 1 year ago - 2 comments

#566 - [MAINT] test build of conda as part of the bootstrap workflow

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 2 comments

#565 - add install of bids validator

Issue - State: closed - Opened by Remi-Gau over 1 year ago - 1 comment
Labels: enhancement

#564 - [MAINT] minimize file changes that can trigger the bootstrap workflow

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 3 comments