ReddyLab/ggr-cwl-ipynb-gen issues and pull requests

#23 - Change inputs to strings for code and text cells in nbformat.v3

Pull Request - State: closed - Opened by alexbarrera 29 days ago

#22 - Update README.md

Pull Request - State: closed - Opened by alexbarrera 7 months ago

#21 - Use `basespace-cli` instead of `basemount` to download projects from Basespace

Issue - State: open - Opened by alexbarrera over 2 years ago

#20 - Add executable scripts and refactor package structure

Pull Request - State: closed - Opened by alexbarrera over 3 years ago - 1 comment

#19 - Moves all setup information to setup.cfg

Pull Request - State: closed - Opened by tncowart over 3 years ago - 1 comment

#18 - Changes a file name so it's importable

Pull Request - State: closed - Opened by tncowart over 3 years ago

#17 - ImportError due to relative import

Issue - State: closed - Opened by alexbarrera over 3 years ago - 10 comments

#16 - Adds a pylint file and fixes a lot of linter issues.

Pull Request - State: closed - Opened by tncowart over 3 years ago

#15 - Update codebase to python 3

Pull Request - State: closed - Opened by alexbarrera over 3 years ago - 4 comments

#14 - Add tests

Issue - State: open - Opened by tncowart over 3 years ago

#13 - Make project installable with `conda`

Issue - State: open - Opened by tncowart over 3 years ago

#12 - Make project installable with `pip`

Issue - State: closed - Opened by tncowart over 3 years ago

#11 - Convert to Python 3

Issue - State: closed - Opened by tncowart over 3 years ago

#10 - Fastq gzipped

Pull Request - State: closed - Opened by alexbarrera about 4 years ago

#9 - Problem when project name doesn't match seq. project name in sftp

Issue - State: open - Opened by alexbarrera about 6 years ago

#8 - Data acquisition from sftp with multiple flowcell credentials fails

Issue - State: open - Opened by alexbarrera about 6 years ago

#7 - v1.1: Added flowcell functionality, logging, and bug fixes

Pull Request - State: closed - Opened by darrylyan46 over 6 years ago

#6 - Additional cells for generating QC table, fingerPrint plots, and data upload

Pull Request - State: closed - Opened by darrylyan46 over 6 years ago - 1 comment

#5 - Added contamination script and Jinja2 template

Pull Request - State: closed - Opened by darrylyan46 about 7 years ago

#4 - Add support for data coming from the MiSeq

Pull Request - State: closed - Opened by alexbarrera about 7 years ago

#3 - Darrylyan46 master