Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / RNAcentral/rnacentral-webcode issues and pull requests

#631 - Add a small note about long term data preservation

Pull Request - State: closed - Opened by blakesweeney 7 months ago - 3 comments

#630 - Release 24

Pull Request - State: closed - Opened by carlosribas 7 months ago

#629 - Db changes

Pull Request - State: closed - Opened by carlosribas 7 months ago

#628 - API search results not matching online search results

Issue - State: closed - Opened by joseph-siefert 8 months ago - 2 comments

#627 - Improvements to sequence features

Pull Request - State: open - Opened by blakesweeney 9 months ago

#626 - New generic page

Pull Request - State: closed - Opened by carlosribas 9 months ago

#625 - error: Open Access Publications You need to pass a list of ids as a variable, e.g. search='["id1", "id2"]'

Issue - State: closed - Opened by linkzola 11 months ago - 1 comment

#624 - Release 24 Checklist

Issue - State: closed - Opened by carlosribas 11 months ago - 1 comment

#623 - Release 23

Pull Request - State: closed - Opened by carlosribas 11 months ago

#622 - Is there a database production issue ?

Issue - State: closed - Opened by eddelbuettel 11 months ago - 4 comments

#621 - Show LitSumm summaries

Pull Request - State: closed - Opened by carlosribas 11 months ago

#620 - Interrupted download

Issue - State: open - Opened by Altair6088 about 1 year ago - 2 comments

#619 - Link to QuickGO in xref table (RNA-283)

Pull Request - State: closed - Opened by carlosribas over 1 year ago

#618 - Improve Interaction table (RNA-286)

Pull Request - State: closed - Opened by carlosribas over 1 year ago

#617 - Ga4 and api changes

Pull Request - State: closed - Opened by carlosribas over 1 year ago

#616 - Api improvements

Pull Request - State: closed - Opened by carlosribas over 1 year ago

#615 - Release 23 Checklist

Issue - State: closed - Opened by carlosribas over 1 year ago

#614 - Release 22

Pull Request - State: closed - Opened by carlosribas over 1 year ago

#613 - Properly handle inactive genome locations

Issue - State: closed - Opened by blakesweeney over 1 year ago - 2 comments

#612 - Add an edit button to all R2DT diagrams on RNAcentral

Issue - State: open - Opened by blakesweeney almost 2 years ago

#611 - Ensure all RNA sequences are inactive

Issue - State: closed - Opened by blakesweeney almost 2 years ago - 2 comments

#610 - K8 improvements

Pull Request - State: closed - Opened by carlosribas almost 2 years ago

#609 - Fix facet naming: rNA -> RNA thermoteter

Issue - State: closed - Opened by blakesweeney about 2 years ago

#608 - Tracking issue for databases to import

Issue - State: open - Opened by blakesweeney about 2 years ago

#607 - K8 changes

Pull Request - State: closed - Opened by carlosribas about 2 years ago

#606 - Update search index

Issue - State: open - Opened by blakesweeney about 2 years ago

#605 - Announce new R2DT hits

Issue - State: open - Opened by blakesweeney about 2 years ago

#604 - Delete all old SVG files

Issue - State: open - Opened by blakesweeney about 2 years ago

#603 - Release 22 Checklist

Issue - State: closed - Opened by carlosribas about 2 years ago

#602 - Release 21

Pull Request - State: closed - Opened by carlosribas about 2 years ago

#601 - Fix links to Ensembl Genomes for genes

Issue - State: closed - Opened by blakesweeney about 2 years ago

#600 - Use pre-commit

Pull Request - State: closed - Opened by carlosribas about 2 years ago

#599 - Properly handle possibly odd localization

Issue - State: closed - Opened by blakesweeney about 2 years ago - 2 comments

#598 - Do not parse out URS taxids from queries

Issue - State: closed - Opened by blakesweeney about 2 years ago - 1 comment

#597 - Release 21 Checklist

Issue - State: closed - Opened by blakesweeney about 2 years ago

#596 - Why the RNA sequences contain "T"?

Issue - State: open - Opened by CatIIIIIIII about 2 years ago

#595 - Create an ID mapping service

Issue - State: open - Opened by blakesweeney over 2 years ago

#594 - Tolerate mixed case sequences in feature viewer

Issue - State: closed - Opened by blakesweeney over 2 years ago - 1 comment

#593 - Update API docs about `count` field

Issue - State: closed - Opened by blakesweeney over 2 years ago

#592 - Add Swissbiopics

Pull Request - State: closed - Opened by carlosribas over 2 years ago

#591 - Add similar sequences tab

Issue - State: open - Opened by blakesweeney over 2 years ago

#590 - Allow users to download the currently displayed genome browser

Issue - State: closed - Opened by blakesweeney over 2 years ago - 1 comment
Labels: SAB

#589 - Fix the number of species

Issue - State: closed - Opened by carlosribas over 2 years ago - 1 comment

#588 - Add RNA type pages

Issue - State: open - Opened by blakesweeney over 2 years ago

#587 - Update use cases section

Issue - State: open - Opened by blakesweeney over 2 years ago

#586 - Update homepage

Issue - State: open - Opened by blakesweeney over 2 years ago

#582 - Correct links to piRBase

Issue - State: closed - Opened by blakesweeney over 2 years ago - 1 comment

#580 - PG11 Transition

Issue - State: closed - Opened by blakesweeney over 2 years ago - 3 comments

#579 - Include Swiss BioPic images into RNAcentral

Issue - State: closed - Opened by blakesweeney over 2 years ago

#577 - Add some documentation about the FTP archive

Pull Request - State: closed - Opened by afg1 over 2 years ago

#568 - Release 20 Checklist

Issue - State: closed - Opened by carlosribas about 3 years ago

#564 - Check links to IntAct

Issue - State: closed - Opened by AntonPetrov about 3 years ago - 1 comment
Labels: bug

#554 - Display expression atlas data in RNAcentral

Issue - State: closed - Opened by blakesweeney over 3 years ago - 5 comments

#553 - Link to lncatlas

Issue - State: open - Opened by blakesweeney over 3 years ago - 2 comments

#551 - Update qa information

Pull Request - State: closed - Opened by blakesweeney over 3 years ago

#546 - Remove featured use cases from the homepage

Pull Request - State: closed - Opened by AntonPetrov over 3 years ago

#544 - Run automated PDBe import

Issue - State: closed - Opened by blakesweeney over 3 years ago - 2 comments
Labels: enhancement, new feature

#541 - R2DT rRNA QA steps

Issue - State: closed - Opened by blakesweeney over 3 years ago - 1 comment
Labels: enhancement, qc

#536 - Update text search export

Issue - State: closed - Opened by carlosribas over 3 years ago - 1 comment
Labels: enhancement

#531 - Integrate FuncPEP

Issue - State: closed - Opened by AntonPetrov almost 4 years ago - 1 comment
Labels: new database

#528 - Integrate PLncDB V2.0

Issue - State: closed - Opened by AntonPetrov about 4 years ago - 1 comment
Labels: new database

#513 - Do not link to tmRNA website

Issue - State: closed - Opened by AntonPetrov about 4 years ago - 1 comment
Labels: enhancement

#493 - Differentiate URS pages from URS_taxid pages

Pull Request - State: closed - Opened by AntonPetrov almost 5 years ago - 1 comment

#479 - Do not show genome coordinates for obsolete sequences

Issue - State: closed - Opened by AntonPetrov almost 5 years ago
Labels: bug

#474 - Allow multiple genomes per species

Issue - State: closed - Opened by blakesweeney about 5 years ago - 1 comment

#453 - Provide GFF/BED files for more genomes on FTP

Issue - State: closed - Opened by AntonPetrov over 5 years ago - 1 comment
Labels: enhancement

#443 - Ensure python3 compatibility, create a python3-based Docker image

Issue - State: closed - Opened by BurkovBA over 5 years ago
Labels: technical debt

#439 - Use qa_status table for QA messages

Issue - State: closed - Opened by blakesweeney almost 6 years ago - 1 comment
Labels: enhancement

#437 - Display phylogenies using rnc_taxonomy table

Issue - State: closed - Opened by blakesweeney almost 6 years ago - 2 comments

#408 - LNcipedia checkbox cannot be unclicked

Issue - State: closed - Opened by BurkovBA about 6 years ago - 1 comment
Labels: bug

#384 - Create new tables for representing publications

Issue - State: closed - Opened by blakesweeney over 6 years ago - 1 comment

#373 - The chromosome selected to display is inconsistent

Issue - State: closed - Opened by blakesweeney over 6 years ago - 3 comments
Labels: enhancement

#357 - Make the difference between a generic page and a species specific page clear

Issue - State: closed - Opened by blakesweeney over 6 years ago - 2 comments
Labels: enhancement, SAB

#354 - Add reasonable links to pubmed/europepmc searches

Issue - State: closed - Opened by blakesweeney over 6 years ago
Labels: new feature, SAB

#352 - Reconsider RNAcentral's stance on importing cis-reg elements from Rfam

Issue - State: closed - Opened by blakesweeney over 6 years ago - 2 comments
Labels: data problem, SAB

#333 - Inconsistency: GenomeMappings columns names are start/stop, GenomeLocations start/end

Issue - State: closed - Opened by BurkovBA over 6 years ago - 1 comment
Labels: data problem, technical debt

#332 - Accession.species should be replaced with taxid

Issue - State: open - Opened by BurkovBA over 6 years ago
Labels: technical debt

#324 - Show interesting publications for some sequences

Issue - State: closed - Opened by blakesweeney over 6 years ago - 1 comment
Labels: enhancement

#306 - Merge identical features in feature viewer

Issue - State: closed - Opened by BurkovBA almost 7 years ago
Labels: enhancement

#296 - Import more data on publications from EuropePMC

Issue - State: closed - Opened by BurkovBA almost 7 years ago - 1 comment
Labels: enhancement, new data

#292 - Export ID mapping file to EuropePMC

Issue - State: closed - Opened by AntonPetrov almost 7 years ago - 1 comment
Labels: new feature

#281 - Add quality check for inconsistent lineage assignments

Issue - State: closed - Opened by blakesweeney almost 7 years ago - 1 comment
Labels: qc

#261 - Sequence search improvements

Issue - State: closed - Opened by AntonPetrov almost 7 years ago - 1 comment
Labels: enhancement, new feature

#239 - Link to lncpedia publication page

Issue - State: closed - Opened by blakesweeney about 7 years ago - 1 comment
Labels: enhancement

#238 - Add data from lncDB

Issue - State: closed - Opened by blakesweeney about 7 years ago - 1 comment
Labels: new database

#214 - Import OMIM

Issue - State: closed - Opened by AntonPetrov over 7 years ago
Labels: new database

#212 - Investigate Google indexing problems

Issue - State: closed - Opened by AntonPetrov over 7 years ago - 1 comment
Labels: question

#204 - Import ZFIN

Issue - State: closed - Opened by AntonPetrov over 7 years ago - 1 comment
Labels: new database

#203 - Import LncRNAWiki

Issue - State: closed - Opened by AntonPetrov over 7 years ago - 1 comment
Labels: new database

#201 - Import CRW data

Issue - State: closed - Opened by AntonPetrov over 7 years ago - 1 comment
Labels: new database

#181 - The ordering of tracks should be the same between RNAcentral and Ensembl

Issue - State: closed - Opened by blakesweeney over 7 years ago - 1 comment
Labels: enhancement

#179 - Check that yeast lncRNA type is correct

Issue - State: closed - Opened by AntonPetrov over 7 years ago - 2 comments
Labels: data problem

#154 - Import E-Merge publications into RNAcentral

Issue - State: closed - Opened by AntonPetrov over 7 years ago - 1 comment
Labels: new feature

#140 - Additional QC checks

Issue - State: closed - Opened by AntonPetrov over 7 years ago - 1 comment
Labels: data problem

#138 - Import RMDB

Issue - State: closed - Opened by AntonPetrov over 7 years ago - 2 comments
Labels: new database

#99 - Fix SILVA ranges

Issue - State: closed - Opened by AntonPetrov almost 8 years ago - 1 comment
Labels: data problem

#98 - Import SILVA inferred taxonomy

Issue - State: closed - Opened by AntonPetrov almost 8 years ago - 1 comment
Labels: new data

#97 - Import more lncRNAdb xrefs

Issue - State: closed - Opened by AntonPetrov almost 8 years ago - 1 comment
Labels: new data

#75 - Common name exported incorrectly for xml indexing

Issue - State: closed - Opened by AntonPetrov about 8 years ago - 2 comments
Labels: bug

#67 - Summary pages for ncRNA types

Issue - State: closed - Opened by AntonPetrov about 8 years ago - 1 comment
Labels: new feature