Ecosyste.ms: Issues

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GitHub / RIVM-bioinformatics/AmpliGone issues and pull requests

#82 - fix: static analysis compatibility

Pull Request - State: open - Opened by raaijmag about 1 month ago - 1 comment

#81 - Improve maintainability of core read modification logic

Issue - State: open - Opened by florianzwagemaker 2 months ago
Labels: enhancement

#80 - Improve representation of (alignment)score in primersearch output BEDfile

Issue - State: open - Opened by florianzwagemaker 2 months ago
Labels: enhancement

#79 - Some questions regarding 16s rRNA primers

Issue - State: open - Opened by Thomieh73 5 months ago - 1 comment

#78 - version 2.0.0

Pull Request - State: open - Opened by florianzwagemaker 6 months ago - 1 comment

#77 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago - 1 comment

#76 - chore(main): release 1.3.1

Pull Request - State: closed - Opened by ids-bioinformatics 8 months ago - 1 comment
Labels: autorelease: tagged

#74 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago

#73 - chore(main): release 1.3.0

Pull Request - State: closed - Opened by ids-bioinformatics over 1 year ago - 1 comment
Labels: autorelease: tagged

#72 - Use reference-specific primer coordinates

Pull Request - State: closed - Opened by florianzwagemaker over 1 year ago

#71 - multi-ref support

Pull Request - State: closed - Opened by florianzwagemaker over 1 year ago

#70 - support for multi-fasta reference input

Pull Request - State: closed - Opened by florianzwagemaker over 1 year ago

#69 - Support for multiple sequences in the input reference FASTA file

Issue - State: closed - Opened by BertBog over 1 year ago - 4 comments
Labels: enhancement, good first issue

#68 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago

#67 - chore(main): release 1.2.1

Pull Request - State: closed - Opened by ids-bioinformatics almost 2 years ago - 1 comment
Labels: autorelease: tagged

#66 - Extension checking

Pull Request - State: closed - Opened by KHajji almost 2 years ago

#65 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago

#64 - chore(main): release 1.2.0

Pull Request - State: closed - Opened by ids-bioinformatics almost 2 years ago - 1 comment
Labels: autorelease: tagged

#63 - Add fragmented amplicon-type removal method

Pull Request - State: closed - Opened by florianzwagemaker almost 2 years ago

#62 - add fragmented amplicon type

Pull Request - State: closed - Opened by florianzwagemaker almost 2 years ago

#61 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#60 - chore: release 1.1.0

Pull Request - State: closed - Opened by ids-bioinformatics over 2 years ago - 1 comment
Labels: autorelease: tagged

#58 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#57 - chore: release 1.0.3

Pull Request - State: closed - Opened by ids-bioinformatics over 2 years ago - 1 comment
Labels: autorelease: tagged

#56 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#55 - chore: release 1.0.2

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago - 1 comment
Labels: autorelease: tagged

#53 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#52 - chore: release 1.0.1

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago - 1 comment
Labels: autorelease: tagged

#51 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago

#50 - chore: release 1.0.0

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago - 1 comment
Labels: autorelease: tagged

#48 - Addition of docstrings

Pull Request - State: closed - Opened by florianzwagemaker over 2 years ago

#47 - BED support

Pull Request - State: closed - Opened by KHajji over 2 years ago

#46 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#45 - chore: release 0.4.3

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#44 - remove unnecessary print statement and update docs

Pull Request - State: closed - Opened by florianzwagemaker almost 3 years ago

#43 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#42 - chore: release 0.4.2

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#41 - allow user-defined primer error rate

Pull Request - State: closed - Opened by florianzwagemaker almost 3 years ago

#40 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#39 - chore: release 0.4.1

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#38 - fix duplications in the removed primers overview

Pull Request - State: closed - Opened by florianzwagemaker almost 3 years ago

#37 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#36 - chore: release 0.4.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#34 - Tail pr removals

Pull Request - State: closed - Opened by florianzwagemaker almost 3 years ago

#33 - Mismatch primer search

Pull Request - State: closed - Opened by florianzwagemaker almost 3 years ago

#32 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago

#31 - chore: release 0.3.3

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#29 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#28 - chore: release 0.3.2

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#27 - fix exported coordinates

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago

#26 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#25 - chore: release 0.3.1

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#24 - account for softclips and custom scoring params

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago

#23 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#22 - chore: release 0.3.0

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#21 - Use CIGAR strings for primer removal process & fast data loading

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago
Labels: enhancement

#20 - Use CIGAR strings to determine sequence cut position

Pull Request - State: closed - Opened by KHajji about 3 years ago
Labels: enhancement

#19 - Improve data loading speed

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago
Labels: enhancement

#18 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#17 - chore: release 0.2.3

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#16 - set correct exit code for #12

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago

#15 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#14 - chore: release 0.2.2

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#13 - Make sure AmpliGone exits cleanly in various situations

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago

#12 - Give an option to exit cleanly when empty input is given

Issue - State: closed - Opened by florianzwagemaker about 3 years ago
Labels: enhancement

#11 - Exit cleanly when no primer-sequence coordinates are found

Issue - State: closed - Opened by florianzwagemaker about 3 years ago
Labels: enhancement

#10 - chore: sync main to dev

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago

#9 - chore: release 0.2.1

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#8 - add github-actions rules + fix for primer case sensitivity

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago

#7 - add CI rules to dev branch for future merge

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago

#6 - Chore: sync main to dev

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago

#5 - add first version of AmpliGone docs

Pull Request - State: closed - Opened by florianzwagemaker about 3 years ago

#4 - Mixed-case primer input is not supported

Issue - State: closed - Opened by florianzwagemaker about 3 years ago - 1 comment
Labels: bug

#3 - Output csv file with primers that have been removed

Pull Request - State: closed - Opened by florianzwagemaker over 3 years ago

#2 - Exit gracefully when encountering empty input files

Issue - State: closed - Opened by florianzwagemaker over 3 years ago - 1 comment
Labels: bug, enhancement

#1 - Dev

Pull Request - State: closed - Opened by florianzwagemaker over 3 years ago