Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / RECETOX/MSMetaEnhancer issues and pull requests

#155 - Switched to poetry and added additional converters

Pull Request - State: open - Opened by hechth 12 months ago

#154 - Switch to poetry as buildsystem

Issue - State: open - Opened by hechth 12 months ago

#153 - Add `pubchem: inchikey -> inchi` search

Issue - State: open - Opened by hechth 12 months ago

#152 - Update IDSM SPARQL queries to achieve better performance

Pull Request - State: closed - Opened by galgonek about 1 year ago

#151 - Implement derive molecular_weight from Formula converter

Issue - State: open - Opened by hechth about 1 year ago

#149 - Release 0.3.0

Issue - State: closed - Opened by xtrojak almost 2 years ago

#148 - Release 0.3.0

Pull Request - State: closed - Opened by xtrojak almost 2 years ago

#147 - Clean up CI

Pull Request - State: closed - Opened by xtrojak almost 2 years ago

#146 - Clean up CI

Issue - State: closed - Opened by xtrojak almost 2 years ago

#145 - PubChem blocking time

Pull Request - State: closed - Opened by xtrojak almost 2 years ago

#144 - Prevent Throttler from freezing the whole app

Pull Request - State: closed - Opened by xtrojak almost 2 years ago

#143 - Improve PubChem throttling

Issue - State: closed - Opened by xtrojak almost 2 years ago

#142 - Improve PubChem throttling

Issue - State: closed - Opened by xtrojak almost 2 years ago - 1 comment

#141 - Enable metadata input

Pull Request - State: closed - Opened by xtrojak almost 2 years ago - 2 comments

#140 - Remove NLM (ChemIDplus) service

Pull Request - State: closed - Opened by xtrojak almost 2 years ago

#139 - Remove NLM service

Issue - State: closed - Opened by xtrojak almost 2 years ago

#138 - Implement InChI to SMILES conversion

Pull Request - State: closed - Opened by xtrojak almost 2 years ago - 3 comments

#137 - Implement pandas data loader

Issue - State: closed - Opened by hechth almost 2 years ago

#136 - Implement pandas data loader to load only spectrum metadata

Issue - State: closed - Opened by hechth almost 2 years ago

#135 - Update docs

Pull Request - State: closed - Opened by xtrojak over 2 years ago

#134 - Double check documentation

Issue - State: closed - Opened by hechth over 2 years ago

#133 - Changed BridgeDB references to BridgeDb

Pull Request - State: closed - Opened by hechth over 2 years ago

#132 - The main branch is called 'main' and not 'master.

Pull Request - State: closed - Opened by egonw over 2 years ago

#131 - Update BridgeDB to BridgeDb

Issue - State: closed - Opened by egonw over 2 years ago - 2 comments

#130 - Release 025

Pull Request - State: closed - Opened by hechth over 2 years ago

#129 - Release 0.2.5

Issue - State: closed - Opened by hechth over 2 years ago

#128 - Minor fixes to bibliography

Pull Request - State: closed - Opened by csoneson over 2 years ago

#127 - Update package version

Pull Request - State: closed - Opened by maximskorik over 2 years ago
Labels: documentation

#126 - Update version in software to 0.2.4

Issue - State: closed - Opened by hechth over 2 years ago
Labels: documentation

#125 - Fix Publish to PyPi action

Pull Request - State: closed - Opened by maximskorik over 2 years ago - 2 comments
Labels: bug

#124 - Fix Circuit Breaker pattern in python 3.9; fix skipping async tests

Pull Request - State: closed - Opened by maximskorik over 2 years ago - 2 comments
Labels: bug

#123 - Fix async tests

Pull Request - State: closed - Opened by maximskorik over 2 years ago

#122 - Add circuit breaker to WebConverter class

Pull Request - State: closed - Opened by maximskorik over 2 years ago - 1 comment

#121 - Unify packaging management

Pull Request - State: closed - Opened by xtrojak over 2 years ago

#120 - Change order of entries in docs front page

Pull Request - State: closed - Opened by xtrojak over 2 years ago

#119 - Simplified yaml files

Pull Request - State: closed - Opened by hechth over 2 years ago

#118 - Update Curator tests

Pull Request - State: closed - Opened by xtrojak over 2 years ago

#117 - Remove misleading code from README example

Pull Request - State: closed - Opened by xtrojak over 2 years ago

#116 - RunTimeError when running the example script

Issue - State: closed - Opened by chryswoods over 2 years ago - 1 comment

#113 - [Exploratory] Using the circuit breaker design pattern for web calls

Issue - State: closed - Opened by marshallmcdonnell over 2 years ago - 1 comment

#112 - pytest failure

Issue - State: closed - Opened by chryswoods over 2 years ago - 3 comments

#111 - Fix DOIs

Issue - State: closed - Opened by hechth over 2 years ago - 3 comments

#110 - rev and minimize the codeql config

Pull Request - State: closed - Opened by martenson over 2 years ago

#109 - rev the publish pypi workflow

Pull Request - State: closed - Opened by martenson over 2 years ago

#108 - Escape single quotes in IDSM

Pull Request - State: closed - Opened by xtrojak over 2 years ago

#107 - Update JOSS paper before submission

Pull Request - State: closed - Opened by xtrojak over 2 years ago

#106 - Simplify meta.yaml file

Issue - State: closed - Opened by hechth almost 3 years ago - 5 comments

#105 - Update to version 0.2.3

Pull Request - State: closed - Opened by xtrojak almost 3 years ago

#104 - Introduce KEGG ID conversions to BridgeDB service

Pull Request - State: closed - Opened by xtrojak almost 3 years ago - 1 comment

#103 - Changed double to single quotes in IDSM

Pull Request - State: closed - Opened by xtrojak almost 3 years ago - 1 comment

#102 - Escaped single quotes in strings

Issue - State: closed - Opened by xtrojak almost 3 years ago - 2 comments
Labels: bug

#101 - BridgeDB: Add KEGG Compound ID conversions

Issue - State: closed - Opened by hechth almost 3 years ago

#100 - Update to version 0.2.2

Pull Request - State: closed - Opened by hechth almost 3 years ago

#99 - Release 0.2.2

Issue - State: closed - Opened by hechth almost 3 years ago

#98 - Create publish_pypi.yaml

Pull Request - State: closed - Opened by hechth almost 3 years ago

#97 - Enabled CI for all platforms

Pull Request - State: closed - Opened by hechth almost 3 years ago

#96 - Store logs during annotation

Pull Request - State: closed - Opened by xtrojak almost 3 years ago - 1 comment

#95 - Log: introduce `error` level

Issue - State: closed - Opened by xtrojak almost 3 years ago

#94 - Missing metadata in log file

Issue - State: open - Opened by xtrojak almost 3 years ago

#93 - Implement CI to publish the package on PyPI

Issue - State: closed - Opened by hechth almost 3 years ago

#92 - Continuosly write to log file

Issue - State: closed - Opened by hechth almost 3 years ago

#91 - Log unknown errors

Pull Request - State: closed - Opened by xtrojak almost 3 years ago - 3 comments

#90 - Log unexpected exceptions

Issue - State: closed - Opened by xtrojak almost 3 years ago
Labels: enhancement

#89 - Update meta.yaml file

Issue - State: closed - Opened by hechth almost 3 years ago

#88 - Update CHANGELOG.md

Pull Request - State: closed - Opened by xtrojak almost 3 years ago

#87 - Always terminate Monitor thread

Pull Request - State: closed - Opened by xtrojak almost 3 years ago - 4 comments

#86 - Tool will not finish on an error

Issue - State: closed - Opened by xtrojak almost 3 years ago
Labels: bug

#85 - Improved parsing of PubChem response

Pull Request - State: closed - Opened by xtrojak almost 3 years ago - 4 comments

#84 - PubChem fails on no hits

Issue - State: closed - Opened by xtrojak almost 3 years ago
Labels: bug

#83 - JOSS paper updates

Pull Request - State: closed - Opened by xtrojak almost 3 years ago

#82 - IDSM service status

Issue - State: open - Opened by xtrojak almost 3 years ago - 3 comments

#81 - Release v0.2.0

Pull Request - State: closed - Opened by xtrojak almost 3 years ago

#80 - Support additional conversions

Pull Request - State: closed - Opened by xtrojak almost 3 years ago - 1 comment

#79 - 75 generalise classes

Pull Request - State: closed - Opened by xtrojak almost 3 years ago

#78 - Add ClassyFire service

Issue - State: open - Opened by hechth almost 3 years ago
Labels: wontfix

#77 - Reintroduce PubChem

Pull Request - State: closed - Opened by xtrojak almost 3 years ago

#76 - Additional conversions

Issue - State: closed - Opened by hechth almost 3 years ago - 1 comment

#75 - Generalise conversion and annotation process

Issue - State: closed - Opened by xtrojak almost 3 years ago

#74 - Rename PubChem to IDSM

Pull Request - State: closed - Opened by xtrojak almost 3 years ago

#73 - Rename PubChem to IDSM

Issue - State: closed - Opened by xtrojak almost 3 years ago

#72 - Added community guidelines

Pull Request - State: closed - Opened by xtrojak about 3 years ago

#71 - 62 improve docs

Pull Request - State: closed - Opened by xtrojak about 3 years ago

#70 - Additional conversions and validation logging

Pull Request - State: closed - Opened by xtrojak about 3 years ago

#69 - CIR returns multiple values

Issue - State: closed - Opened by xtrojak about 3 years ago - 7 comments

#68 - Verification should be tracked in logging

Issue - State: closed - Opened by hechth about 3 years ago

#67 - `PubChem: XXX -> SMILES`: differentiate between canonical and isomeric smiles

Issue - State: closed - Opened by hechth about 3 years ago - 4 comments

#66 - Add CIR: Inchi -> SMILES conversion

Issue - State: closed - Opened by hechth about 3 years ago

#65 - JOSS paper

Pull Request - State: closed - Opened by xtrojak about 3 years ago - 4 comments

#64 - 59 Validate metadata

Pull Request - State: closed - Opened by xtrojak about 3 years ago - 2 comments

#62 - Improve docs layout

Issue - State: closed - Opened by martenson about 3 years ago

#61 - Monitoring of services status

Pull Request - State: closed - Opened by xtrojak about 3 years ago - 1 comment

#60 - 51 - Improve documentation

Pull Request - State: closed - Opened by xtrojak about 3 years ago - 2 comments

#59 - INCHIKEY field gets filled with html content

Issue - State: closed - Opened by hechth about 3 years ago - 4 comments
Labels: bug

#56 - Not available service behaviour

Issue - State: closed - Opened by xtrojak about 3 years ago

#54 - CTS - not reliable performance

Issue - State: closed - Opened by xtrojak about 3 years ago - 2 comments

#53 - try codeql

Pull Request - State: closed - Opened by martenson about 3 years ago - 1 comment