QTIM-Lab/DeepNeuro issues and pull requests

#62 - 。

Issue - State: closed - Opened by TSbme 6 months ago

#61 - When I pulled the skull-stripping module, it would not run

Issue - State: closed - Opened by TSbme over 1 year ago

#60 - fail to import preprocessing module

Issue - State: open - Opened by glzhs about 2 years ago

#59 - HTTPError: HTTP Error 400: Bad Request - loading 'sample_gbm_nifti' sample data

Issue - State: open - Opened by jayurbain over 4 years ago

#58 - HTTP Error 400: bad request

Issue - State: open - Opened by tyronepower almost 5 years ago

#57 - fix(segment_gbm): Update links for GBM segmentation models

Pull Request - State: open - Opened by ysuter almost 5 years ago

#56 - HTTP Error 400 while running Segment_GBM

Issue - State: open - Opened by kbenahmed89 almost 5 years ago - 3 comments

#55 - PermissionError Errno 13 - docker - Brain metastases segmentation

Issue - State: open - Opened by giemmecci almost 5 years ago - 2 comments

#54 - ValueError: could not broadcast input array from shape (64,64,8,2) into shape (64,64,8,3)

Issue - State: closed - Opened by agatadefr about 5 years ago - 3 comments

#53 - ValueError: Cannot create group in read only mode

Issue - State: closed - Opened by agatadefr about 5 years ago

#52 - FileNotFoundError: No such file or no access

Issue - State: closed - Opened by agatadefr about 5 years ago - 5 comments

#51 - about the ADNI dataset

Issue - State: open - Opened by linxueya about 5 years ago

#50 - KeyError: running glioblastoma segmentation from command line

Issue - State: closed - Opened by agatadefr about 5 years ago - 4 comments

#49 - HTTP Error 400 while running Segment_GBM module on the command line

Issue - State: open - Opened by giemmecci about 5 years ago - 10 comments

#48 - Dropbox links broken for notebook sample data

Issue - State: open - Opened by michaelabuchanan about 5 years ago - 2 comments

#47 - Create data converters for DICOM-RT data

Issue - State: open - Opened by AndrewBeers over 5 years ago
Labels: enhancement

#46 - Move from Python 3.5 to 3.6

Issue - State: open - Opened by AndrewBeers over 5 years ago
Labels: enhancement

#45 - typo on ischemic

Issue - State: closed - Opened by JonathanChiang over 5 years ago - 2 comments

#44 - Winter Development 2018

Pull Request - State: closed - Opened by AndrewBeers over 5 years ago

#43 - ValueError: bad marshal data (unknown type code)

Issue - State: closed - Opened by ujjwalbaid0408 over 5 years ago - 1 comment
Labels: bug

#42 - fix: DICOM Conversion errors part II

Pull Request - State: closed - Opened by AndrewBeers almost 6 years ago

#41 - fix: Preprocessor error with DICOM conversion

Pull Request - State: closed - Opened by AndrewBeers almost 6 years ago

#40 - docker: DeepNeuro base docker, add dcmqi

Pull Request - State: closed - Opened by AndrewBeers almost 6 years ago

#39 - Typo corrections on previous merge.

Pull Request - State: closed - Opened by AndrewBeers almost 6 years ago

#38 - RSNA Update / Fall Development

Pull Request - State: closed - Opened by AndrewBeers almost 6 years ago

#37 - Support for TPU (in Colab or otherwise)

Issue - State: open - Opened by AndrewBeers almost 6 years ago
Labels: enhancement

#36 - Pre-emptive error notices.

Issue - State: open - Opened by AndrewBeers almost 6 years ago - 2 comments
Labels: enhancement

#35 - Refactor DICOM conversion for DeepNeuro

Issue - State: open - Opened by AndrewBeers almost 6 years ago
Labels: enhancement

#34 - Current script for rano calculation

Pull Request - State: open - Opened by changken1 almost 6 years ago

#33 - Some minor fixes to deal with missing tkinter and easy_install errors

Pull Request - State: closed - Opened by jmbrown89 almost 6 years ago

#32 - Log files

Issue - State: open - Opened by jmbrown89 almost 6 years ago
Labels: enhancement

#31 - Summer Update for DeepNeuro

Pull Request - State: closed - Opened by AndrewBeers almost 6 years ago

#30 - Is there any plan about upgrade to Python 3.x?

Issue - State: closed - Opened by Qinka almost 6 years ago - 1 comment

#29 - Model Refactoring

Pull Request - State: closed - Opened by AndrewBeers about 6 years ago

#28 - windows support?

Issue - State: closed - Opened by bgongsi about 6 years ago - 1 comment
Labels: question

#27 - Multi-sequence inputs stored as 4D niftis are not handled correctly

Issue - State: open - Opened by jmbrown89 about 6 years ago
Labels: bug

#26 - Adding stronger support for 2D neural networks in DeepNeuro, callbacks, GANs, and convenience features.

Pull Request - State: closed - Opened by AndrewBeers about 6 years ago

#25 - 2to3

Pull Request - State: closed - Opened by AndrewBeers about 6 years ago

#24 - Replace xrange for Python 3.x compatibility

Issue - State: closed - Opened by eashvere about 6 years ago - 3 comments

#23 - Error-Catching for bad cases in data groups.

Issue - State: closed - Opened by AndrewBeers about 6 years ago - 1 comment
Labels: bug, enhancement

#22 - Update model.py

Pull Request - State: closed - Opened by changken1 about 6 years ago

#21 - Integrate neurodocker with DeepNeuro.

Issue - State: open - Opened by AndrewBeers about 6 years ago
Labels: enhancement

#20 - Train/Test Splits with Patient/Identifier Groupings

Issue - State: open - Opened by AndrewBeers about 6 years ago
Labels: enhancement

#19 - Update output.py

Pull Request - State: closed - Opened by changken1 over 6 years ago

#18 - Create more efficient patching practices for training data.

Issue - State: open - Opened by AndrewBeers over 6 years ago
Labels: enhancement

#17 - Create save-out function for any format.

Issue - State: closed - Opened by AndrewBeers over 6 years ago - 1 comment
Labels: enhancement

#16 - Embed radiomics tools from qtim_tools into DeepNeuro as either a "model", or and "output", or both.

Issue - State: open - Opened by AndrewBeers over 6 years ago
Labels: enhancement

#15 - Create a .deepneuro file that manages the locations of external packages like 3DSlicer

Issue - State: open - Opened by AndrewBeers over 6 years ago
Labels: enhancement

#14 - fix: Variety of self-inflicted errors.

Pull Request - State: closed - Opened by AndrewBeers over 6 years ago

#13 - Create an "un-preprocessing" pipeline

Issue - State: open - Opened by AndrewBeers over 6 years ago
Labels: enhancement

#12 - Skull Stripping Module + Major Update

Pull Request - State: closed - Opened by AndrewBeers over 6 years ago

#11 - Create internal practices regarding batch dimensions, channel dimensions.

Issue - State: closed - Opened by AndrewBeers over 6 years ago - 1 comment
Labels: bug

#10 - Refactor Data Transformation Code

Issue - State: open - Opened by AndrewBeers over 6 years ago - 1 comment
Labels: enhancement

#9 - Parallel inference.

Issue - State: open - Opened by AndrewBeers over 6 years ago
Labels: enhancement

#8 - Templating for DeepNeuro modules.

Issue - State: open - Opened by AndrewBeers over 6 years ago
Labels: enhancement

#7 - Test Suites

Issue - State: open - Opened by AndrewBeers over 6 years ago - 1 comment
Labels: enhancement

#6 - Handling different input volume dimensions

Issue - State: open - Opened by jmbrown89 over 6 years ago - 1 comment
Labels: enhancement

#5 - Remove excessive print statements during augmentation phase

Issue - State: closed - Opened by jmbrown89 over 6 years ago - 2 comments
Labels: enhancement

#4 - Suggestions for Improvement

Issue - State: closed - Opened by changken1 over 6 years ago - 1 comment
Labels: enhancement

#3 - Deepneuro temp file bug

Pull Request - State: closed - Opened by AndrewBeers over 6 years ago

#2 - Patch-searching heuristic

Issue - State: closed - Opened by AndrewBeers almost 7 years ago

#1 - Transfer data-type conversion utilities from qtim_tools to DeepNeuro

Issue - State: closed - Opened by AndrewBeers almost 7 years ago

GitHub / QTIM-Lab/DeepNeuro issues and pull requests