Ecosyste.ms: Issues

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GitHub / PyMVPA/PyMVPA issues and pull requests

#633 - Transform errors into accuracies

Pull Request - State: closed - Opened by sajjadtorabian about 2 years ago - 1 comment

#632 - modshogun.labels

Issue - State: open - Opened by geomen862 about 2 years ago

#631 - RSA tutorial does not work

Issue - State: open - Opened by GMerakis over 2 years ago

#630 - Reporting errors when importing mvpa2.suite

Issue - State: open - Opened by Y2KdeLaplace over 2 years ago - 1 comment

#629 - ImportError: No module named mvpa2.suite

Issue - State: open - Opened by MunibaFaiza over 2 years ago - 3 comments

#628 - docs: Fix a few typos

Pull Request - State: closed - Opened by timgates42 about 3 years ago - 1 comment

#626 - Searchlight Hyperalignment inappropriately scales values

Issue - State: open - Opened by bogpetre over 3 years ago - 4 comments

#625 - [DOC] fix broken link to NiBabel on starting page

Pull Request - State: open - Opened by mekman over 3 years ago

#624 - nibabel import error

Issue - State: open - Opened by snastase over 3 years ago - 2 comments

#623 - ModuleNotFoundError: No module named 'mvpa2'

Issue - State: closed - Opened by mndhub almost 4 years ago - 2 comments

#622 - Aggregating multiple runs

Issue - State: closed - Opened by Amandaobrien8 about 4 years ago - 1 comment

#621 - libsvm bindings broke on buster

Issue - State: closed - Opened by yarikoptic over 4 years ago - 1 comment

#620 - probability mask in fmri_dataset is not working properly

Issue - State: closed - Opened by bakerhassan over 4 years ago

#619 - FIX import of skipif for newer versions of numpy

Pull Request - State: closed - Opened by mvdoc over 4 years ago

#616 - Error when using 'pjoin' module

Issue - State: closed - Opened by rickwith about 5 years ago - 1 comment

#614 - BLD: for travis, set language to java and use trusty as distribution

Pull Request - State: closed - Opened by nno over 5 years ago - 5 comments

#611 - TODOs postponed during Python3 conversion

Issue - State: open - Opened by yarikoptic over 5 years ago

#610 - BF: guard against under/overflows and mitigate in case of logprob=True (default)

Pull Request - State: closed - Opened by yarikoptic over 5 years ago - 9 comments

#608 - ENH(BK): prototype for get_contrasts to obtain contrasts for fit NiPy GLM model

Pull Request - State: closed - Opened by yarikoptic over 5 years ago - 4 comments

#606 - Set division in HalfPartitioner to floor division for Python 3 compat

Pull Request - State: open - Opened by ddwagner over 5 years ago - 4 comments

#605 - BF: AttributeMap -- consider only int (+unsigned) and float to be numeric labels

Pull Request - State: closed - Opened by yarikoptic over 5 years ago - 3 comments

#604 - Unicode target labels cause opaque error message

Issue - State: closed - Opened by florisvanvugt over 5 years ago - 2 comments

#603 - ENH: fsl.load_stats to load cope/zstat etc from .feat directories

Pull Request - State: open - Opened by yarikoptic over 5 years ago - 2 comments
Labels: good-for-hackathon

#602 - BF: set affine to the one we know in map2nifti

Pull Request - State: closed - Opened by yarikoptic over 5 years ago - 3 comments

#601 - Convert bytes output of subprocess to string for Python 3

Pull Request - State: closed - Opened by justinshenk over 5 years ago - 4 comments

#599 - map2nifti returns an object with no affine transformation

Issue - State: closed - Opened by ddwagner almost 6 years ago

#598 - ImportError: No module named modshogun

Issue - State: closed - Opened by BrianOdegaard almost 6 years ago - 3 comments

#597 - GNBWeights

Pull Request - State: closed - Opened by adswa almost 6 years ago - 5 comments

#596 - [ENH]: Sensitvitiy Analyzer for sklearns SGD classifier

Pull Request - State: open - Opened by adswa almost 6 years ago - 1 comment

#594 - [FIX] attempt to fix return of nan when convolving negative values with HRF

Pull Request - State: closed - Opened by adswa almost 6 years ago - 3 comments

#593 - Connectivity Hyperalignment log issue

Pull Request - State: closed - Opened by anibalsolon almost 6 years ago - 3 comments

#592 - Tutorial issue

Issue - State: closed - Opened by don-tpanic about 6 years ago - 2 comments

#591 - [Work in progress] GNBWeights

Pull Request - State: closed - Opened by adswa about 6 years ago - 8 comments

#590 - Installation Error

Issue - State: closed - Opened by johnmarktaylor91 over 6 years ago - 5 comments

#588 - Two fixes to make docs buildable again

Pull Request - State: closed - Opened by yarikoptic over 6 years ago - 2 comments

#587 - Preparing for 2.6.5 release -- do not merge

Pull Request - State: closed - Opened by yarikoptic over 6 years ago - 1 comment

#586 - Add unittest to CHA

Pull Request - State: closed - Opened by feilong over 6 years ago - 6 comments

#584 - Adds searchlight on the surface mesh - using disks instead of spheres

Pull Request - State: closed - Opened by miykael over 6 years ago - 7 comments

#583 - [ENH] Add flag for Searchlight to preallocate output

Pull Request - State: closed - Opened by mvdoc over 6 years ago - 6 comments

#582 - wrong cluster labels from GroupClusterThreshold

Issue - State: open - Opened by dinga92 over 6 years ago - 2 comments

#581 - Wrong GNB probabilities

Issue - State: closed - Opened by yarikoptic over 6 years ago - 17 comments

#580 - Added connectivity hyperalignment to algorithms.

Pull Request - State: closed - Opened by swaroopgj over 6 years ago - 8 comments

#579 - make prep-afni-surf compatible with matplotlib >=2.0.0

Pull Request - State: closed - Opened by dillonplunkett over 6 years ago - 3 comments

#578 - Hyperalignment BIDS-App

Issue - State: open - Opened by yarikoptic over 6 years ago
Labels: good-for-hackathon

#577 - Minor docs/code tune up for searchlight on surface

Pull Request - State: closed - Opened by yarikoptic over 6 years ago - 3 comments

#576 - FIX: return only indices for which we have neighbors in SurfaceQueryEngine

Pull Request - State: closed - Opened by mvdoc over 6 years ago - 4 comments

#574 - Error in pymvpa2-prep-afni-surf when generating QA images

Issue - State: closed - Opened by dillonplunkett over 6 years ago - 3 comments

#573 - FIX: order of parenthesis in ValueError in _find_node_indices

Pull Request - State: closed - Opened by mvdoc over 6 years ago - 2 comments

#572 - FutureWarning from numpy in svm.py

Issue - State: open - Opened by mvdoc almost 7 years ago

#571 - BF?ENH?: sort the unique values in the alternative handling of .unique

Pull Request - State: closed - Opened by yarikoptic almost 7 years ago - 4 comments

#570 - Can't import libsvm

Issue - State: open - Opened by ZoevilH almost 7 years ago - 12 comments

#569 - Making scatter more robust

Pull Request - State: closed - Opened by yarikoptic almost 7 years ago - 2 comments

#568 - smlr extension within (Neuro)Debian packages is not loaded

Issue - State: closed - Opened by yarikoptic almost 7 years ago - 1 comment

#567 - NeuroDebian package requires swig, gfortran but not listed as dependencies?

Issue - State: closed - Opened by mvdoc almost 7 years ago - 1 comment

#566 - Inconsistency of naming tutorial data (data instead of haxby2001)

Issue - State: open - Opened by mvdoc almost 7 years ago - 1 comment

#565 - Added new classifier ShrinkageLDA to gda.py

Pull Request - State: open - Opened by mmbannert almost 7 years ago - 14 comments

#564 - mvpa2-lib 2.6.3 package appears to break smlr.

Issue - State: closed - Opened by ddwagner almost 7 years ago - 3 comments

#563 - ENH: Robustify h5save() in the presence of file locks

Pull Request - State: closed - Opened by mih almost 7 years ago - 5 comments
Labels: Enhancement

#562 - GroupClusterThreshold: Cluster labels are grouped in vertical stripes

Issue - State: closed - Opened by shimsei almost 7 years ago - 7 comments

#561 - because chisqprob was deprecated in 0.17.0

Pull Request - State: closed - Opened by usmanayubsh almost 7 years ago - 2 comments

#560 - conda-forge pymvpa2 package doesn't come with pprocess

Issue - State: open - Opened by mvdoc almost 7 years ago - 1 comment

#559 - examples/nested_cv.py fails

Issue - State: open - Opened by mvdoc about 7 years ago - 1 comment

#558 - PyMVPA aborts when loading fmri dataset

Issue - State: closed - Opened by samfux84 about 7 years ago - 7 comments

#557 - cmdline invocation is sensitive to missing optional depends

Issue - State: closed - Opened by yarikoptic about 7 years ago

#556 - Minor fixups

Pull Request - State: closed - Opened by yarikoptic about 7 years ago - 4 comments

#555 - A variety of fixes to make tests pass across all the builds for conda-forge recipe

Pull Request - State: closed - Opened by yarikoptic about 7 years ago - 3 comments

#554 - a variety of issue on windows

Issue - State: closed - Opened by yarikoptic about 7 years ago
Labels: Test failure

#552 - ENH & FIX for Procrustes

Pull Request - State: closed - Opened by feilong about 7 years ago - 5 comments

#550 - Leftover of the fix for sphinx somehow forgotten etc

Pull Request - State: closed - Opened by yarikoptic about 7 years ago - 2 comments

#546 - Travis reports error in tests.test_misc_scatter.test_plot_scatter

Issue - State: closed - Opened by nno about 7 years ago

#544 - Cannot build libsvm bindings

Issue - State: closed - Opened by samfux84 about 7 years ago - 4 comments

#540 - travis: shogun-python-modular not available

Issue - State: closed - Opened by nno about 7 years ago - 2 comments

#537 - extend mvpa2.wtf output with paths to modules

Issue - State: open - Opened by yarikoptic about 7 years ago
Labels: Enhancement, Easy

#536 - DOC contributing.MD file for PyMVPA

Pull Request - State: open - Opened by chrispycheng about 7 years ago - 2 comments

#531 - Change colormap in scatter

Issue - State: closed - Opened by mvdoc over 7 years ago - 3 comments

#525 - RF: Python 2/3 compatibility

Pull Request - State: open - Opened by chrispycheng over 7 years ago - 8 comments

#524 - Crossnobis

Pull Request - State: open - Opened by bpinsard over 7 years ago - 14 comments

#507 - NF: Log and apply selections

Pull Request - State: closed - Opened by effigies about 8 years ago - 10 comments

#500 - AttributeError while importing with latest scipy (0.18.0)

Issue - State: closed - Opened by feilong about 8 years ago - 4 comments

#489 - Error importing mvpa2.support.scipy.stats

Issue - State: closed - Opened by bertholdl over 8 years ago - 2 comments

#472 - IndexError with StaticFeatureSelection

Issue - State: open - Opened by feilong over 8 years ago - 2 comments

#423 - [WiP] Problems with GroupClusterThreshold

Issue - State: open - Opened by mvdoc almost 9 years ago - 1 comment

#395 - ENH(WiP): perspective API improvement for GroupClusterThreshold

Pull Request - State: open - Opened by yarikoptic almost 9 years ago - 14 comments
Labels: Suggestion, Enhancement, More info needed

#261 - New partitioner: merge of NFoldPartitioner + Sifter

Issue - State: open - Opened by yarikoptic almost 10 years ago - 1 comment
Labels: Enhancement

#128 - Python 3 version?

Issue - State: open - Opened by naught101 about 11 years ago - 19 comments

#94 - Tutorial data path is '.'

Issue - State: closed - Opened by channingmoore over 12 years ago - 1 comment