Ecosyste.ms: Issues

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GitHub / Project-MONAI/MONAILabel issues and pull requests

#1546 - feat(labels): add initial labels from the server as starting point

Pull Request - State: closed - Opened by sedghi over 1 year ago - 1 comment

#1545 - feat(segmentation tools): working new segmentation panel and brushes

Pull Request - State: closed - Opened by sedghi over 1 year ago

#1545 - feat(segmentation tools): working new segmentation panel and brushes

Pull Request - State: closed - Opened by sedghi over 1 year ago

#1544 - Update transforms that use `image_meta_dict`

Issue - State: open - Opened by yiheng-wang-nv over 1 year ago

#1541 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1537 - Add transform to apply orientation to guidance

Pull Request - State: open - Opened by diazandr3s over 1 year ago - 2 comments

#1537 - Add transform to apply orientation to guidance

Pull Request - State: closed - Opened by diazandr3s over 1 year ago - 6 comments

#1533 - Fix network loading

Pull Request - State: closed - Opened by matt3o over 1 year ago - 4 comments

#1533 - Fix network loading

Pull Request - State: open - Opened by matt3o over 1 year ago - 1 comment

#1531 - feat(ohifv3): parse segment centroids for jump and make smartEdit work

Pull Request - State: closed - Opened by sedghi over 1 year ago - 1 comment

#1531 - feat(ohifv3): parse segment centroids for jump and make smartEdit work

Pull Request - State: closed - Opened by sedghi over 1 year ago - 1 comment

#1528 - Update README - fix unbroken links

Pull Request - State: closed - Opened by diazandr3s over 1 year ago

#1527 - Update infer bundle class to create deepedit infer class

Pull Request - State: closed - Opened by diazandr3s over 1 year ago - 2 comments

#1525 - add segmentation load/rendering for OHIF v3

Pull Request - State: closed - Opened by sedghi over 1 year ago - 1 comment

#1524 - Add request info to return config label indexes

Pull Request - State: closed - Opened by diazandr3s over 1 year ago

#1523 - ValueError: empty range for randrange() (0, 0, 0)

Issue - State: closed - Opened by aletolia over 1 year ago - 2 comments

#1521 - Fix silent fail if network loads wrong weights

Pull Request - State: closed - Opened by matt3o over 1 year ago - 3 comments

#1514 - Add UX improvements into QuPath extension

Pull Request - State: closed - Opened by ivanvykopal over 1 year ago

#1513 - Monailabel Gui/App not starting at all

Issue - State: closed - Opened by raghavzns over 1 year ago - 5 comments

#1512 - Auto-run pretrained model fails with Error 404

Issue - State: closed - Opened by matt3o over 1 year ago - 8 comments

#1508 - Loading network weights with wrong state_dict fails silently

Issue - State: closed - Opened by matt3o over 1 year ago - 4 comments
Labels: enhancement

#1507 - MultiGPU usage problem

Issue - State: open - Opened by gokceay over 1 year ago - 5 comments

#1505 - function to initialise orientation and direction in nrrd images

Pull Request - State: closed - Opened by dorkylever over 1 year ago - 2 comments

#1504 - Create init_direction_and_ori.py

Pull Request - State: closed - Opened by dorkylever over 1 year ago

#1501 - MonaiLabel Segmentation Error

Issue - State: open - Opened by brchck over 1 year ago - 3 comments

#1500 - Fix loading of a next sample for Slicer3D

Pull Request - State: closed - Opened by MartinBrisiak over 1 year ago - 4 comments

#1499 - fix-slicer3d-extension

Pull Request - State: closed - Opened by MartinBrisiak over 1 year ago

#1498 - Fix loading of a next sample for Slicer3D

Pull Request - State: closed - Opened by MartinBrisiak over 1 year ago

#1497 - slicer3d monailabel extension unable to fetch image from the server

Issue - State: open - Opened by MartinBrisiak over 1 year ago - 1 comment

#1496 - Auto segmentation didn't show the pretrain model

Issue - State: open - Opened by antoniaaaaaaaa over 1 year ago - 3 comments

#1493 - 3d Slicer with Keycloak auth not working

Issue - State: open - Opened by demo125 over 1 year ago - 3 comments

#1490 - More documentation on using local (non-zoo) bundles with MONAILabel

Issue - State: open - Opened by wyli over 1 year ago - 3 comments

#1489 - Error while training with MONAILabel's deepedit

Issue - State: closed - Opened by lukasvanderstricht over 1 year ago - 9 comments

#1487 - Monai label server add API to return number of requests in the queue

Issue - State: open - Opened by AHarouni over 1 year ago - 1 comment

#1486 - Monai label should take advantage of all gpus while running inference

Issue - State: closed - Opened by AHarouni over 1 year ago - 5 comments

#1484 - 3D Slicer fetching wrong sample due to local cache

Issue - State: open - Opened by elialombardo over 1 year ago - 1 comment

#1483 - use methods from GeneralTools for getting filename, fix #1480

Pull Request - State: closed - Opened by hubutui over 1 year ago - 2 comments

#1482 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#1480 - the first `/` is missing if we use `Utils.getFileName` on Linux system

Issue - State: closed - Opened by hubutui over 1 year ago - 10 comments

#1478 - Add SAM embedding computation class to segmentation/radiology app

Pull Request - State: closed - Opened by diazandr3s over 1 year ago

#1477 - Use existing segmentation as segmentNode

Issue - State: open - Opened by EvaHeffinck over 1 year ago - 2 comments

#1476 - Fix md5 hashing with FIPS mode

Pull Request - State: closed - Opened by MattTheCuber over 1 year ago - 4 comments

#1474 - Paired programing

Pull Request - State: closed - Opened by Ivan-E-Johnson over 1 year ago

#1473 - Fixed a small typo in the Slicer Module

Pull Request - State: closed - Opened by AbhilakshSinghReen over 1 year ago

#1469 - Monailabel is ignoring arguments (issue with PYTHONPATH?)

Issue - State: open - Opened by dorkylever over 1 year ago - 13 comments

#1467 - Release 0.7 preparation

Pull Request - State: closed - Opened by tangy5 over 1 year ago

#1466 - 0.7.0 release prepare

Pull Request - State: closed - Opened by tangy5 over 1 year ago - 3 comments

#1464 - [Slicer] Fixed the "Background" label in the SmartEdit/Deepgrow section being hidden

Pull Request - State: closed - Opened by MattTheCuber over 1 year ago - 6 comments

#1462 - Fix logging for multiple user/runs

Pull Request - State: closed - Opened by SachidanandAlle over 1 year ago - 1 comment

#1459 - Import multiple labels

Issue - State: open - Opened by haochenz23 over 1 year ago - 6 comments

#1457 - MONAI Label extension in Qupath (pathology app startup failed)

Issue - State: open - Opened by CZXHPB over 1 year ago - 7 comments

#1454 - ERROR: No matching distribution found for numpy==1.21.6

Issue - State: closed - Opened by aaekay over 1 year ago - 5 comments

#1453 - Failed to create process during training hovernet_nuclei model

Issue - State: closed - Opened by Rajeshtims over 1 year ago - 9 comments

#1450 - [DO NOT REVIEW] Test premerge [skip ci]

Pull Request - State: closed - Opened by YanxuanLiu over 1 year ago - 7 comments

#1450 - [DO NOT REVIEW] Test premerge [skip ci]

Pull Request - State: closed - Opened by YanxuanLiu over 1 year ago - 7 comments

#1446 - Need a way to provide patient/ volume level annotations

Issue - State: open - Opened by AHarouni over 1 year ago

#1445 - Need a scoring method to compare inference of 2 models

Issue - State: open - Opened by AHarouni over 1 year ago

#1444 - Need new scoring method to count inferred labels

Issue - State: open - Opened by AHarouni over 1 year ago - 2 comments

#1442 - Allow the use of cpu when having GPUs

Issue - State: open - Opened by AHarouni almost 2 years ago

#1441 - Update installation.rst

Pull Request - State: closed - Opened by eltociear almost 2 years ago

#1440 - qMRMLSegmentEditorWidget has no attribute named 'setSourceVolumeNode'

Issue - State: open - Opened by wyli almost 2 years ago - 1 comment

#1439 - fixes typo slicer next sample

Pull Request - State: closed - Opened by wyli almost 2 years ago

#1438 - default server address slicer plugin

Issue - State: open - Opened by wyli almost 2 years ago - 1 comment

#1437 - Add option to run batch inference from slicer UI

Issue - State: open - Opened by AHarouni almost 2 years ago - 2 comments

#1436 - Add ability to load different label to current image

Issue - State: open - Opened by AHarouni almost 2 years ago - 1 comment

#1435 - OHIF Stack Image Sync

Issue - State: open - Opened by ReubenDo almost 2 years ago - 3 comments

#1433 - Upcoming OpenSlide release will change library filename

Issue - State: open - Opened by bgilbert almost 2 years ago - 1 comment

#1432 - Label Reviewer plugin Doesn't load labels

Issue - State: open - Opened by AHarouni almost 2 years ago

#1430 - Monaibundle lung nodule model error

Issue - State: closed - Opened by junxiant almost 2 years ago - 2 comments

#1428 - Fix typos in quickstart

Pull Request - State: closed - Opened by diazandr3s almost 2 years ago

#1426 - Return prediction with indexes defined in config file

Pull Request - State: closed - Opened by diazandr3s almost 2 years ago - 1 comment

#1425 - Add endo path default bundle version

Pull Request - State: closed - Opened by tangy5 almost 2 years ago

#1424 - Update MONAI to RC6 + Fix Docker for OHIF

Pull Request - State: closed - Opened by SachidanandAlle almost 2 years ago

#1422 - Adding near-real time collaborative manual segmentation

Issue - State: open - Opened by kchawla-pi almost 2 years ago - 2 comments

#1421 - Hovernet Training Error

Issue - State: closed - Opened by OmarAshkar almost 2 years ago - 4 comments

#1420 - Expose a simple way to add training handlers

Issue - State: open - Opened by AHarouni almost 2 years ago

#1418 - upgrade to monairc5 and doc recover

Pull Request - State: closed - Opened by tangy5 almost 2 years ago

#1416 - version download for patholog endoscopy, doc update

Pull Request - State: closed - Opened by tangy5 almost 2 years ago - 2 comments

#1415 - Fix broken link to viewers

Pull Request - State: closed - Opened by diazandr3s almost 2 years ago

#1414 - Pass arg to Infer DeepEdit

Pull Request - State: closed - Opened by diazandr3s almost 2 years ago

#1412 - Update LargestCCD to handle things errors better

Pull Request - State: closed - Opened by Geeks-Sid almost 2 years ago - 3 comments

#1408 - Possible enhancements of `monailabel/utils/others/generic.py`

Issue - State: open - Opened by yiheng-wang-nv almost 2 years ago - 5 comments
Labels: enhancement

#1407 - DeepEdit click based refinement seems to be adding segmentation on wrong side

Issue - State: open - Opened by VishalJ99 almost 2 years ago - 22 comments

#1406 - Background clicks for spleen deepEdit, adding to segmentation, not removing

Issue - State: closed - Opened by VishalJ99 almost 2 years ago - 5 comments

#1405 - update monai to rc4 and fix docs build

Pull Request - State: closed - Opened by SachidanandAlle almost 2 years ago
Labels: 0.7.0

#1404 - Toolkit NGC bundle compatibilities

Pull Request - State: closed - Opened by tangy5 almost 2 years ago - 1 comment
Labels: 0.7.0

#1403 - README.md URLs for Tutorials Broken

Issue - State: closed - Opened by ericspod almost 2 years ago - 4 comments

#1402 - Export torch script when training, Allow to import it for inference

Issue - State: open - Opened by AHarouni almost 2 years ago - 3 comments

#1399 - Add pathology bundle auth token var

Pull Request - State: closed - Opened by tangy5 almost 2 years ago
Labels: 0.7.0

#1398 - Hovernet fix

Pull Request - State: closed - Opened by SachidanandAlle almost 2 years ago

#1397 - Monai Label holds on to GPU memory when facing OOM error

Issue - State: open - Opened by AHarouni almost 2 years ago