Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Project-MONAI/MONAI issues and pull requests

#7287 - MONAI Bundle as an isolated python library

Issue - State: closed - Opened by surajpaib 10 months ago - 1 comment
Labels: Feedback welcomed, community

#7286 - `Invert` transform for MetaTensor

Issue - State: closed - Opened by surajpaib 10 months ago - 1 comment

#7285 - 6676 port generative networks vqvae

Pull Request - State: closed - Opened by marksgraham 10 months ago - 2 comments

#7284 - RuntimeError for SwinUNETR version 2 but not for version 1.

Issue - State: closed - Opened by j-morano 10 months ago - 2 comments
Labels: question, need discussions

#7280 - wholeBody_ct_segmentation failed to be download

Pull Request - State: closed - Opened by KumoLiu 10 months ago - 1 comment

#7279 - SegResNet crashes mid training

Issue - State: closed - Opened by LOL1234LOL 10 months ago - 1 comment

#7278 - About the RandCropByPosNegLabeld function and Spacingd function

Issue - State: closed - Opened by quxianjiuguo 10 months ago - 1 comment

#7275 - update the Python version requirements for transformers

Pull Request - State: closed - Opened by KumoLiu 10 months ago - 3 comments

#7274 - Bump conda-incubator/setup-miniconda from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#7272 - 7263 add diffusion loss

Pull Request - State: closed - Opened by kvttt 10 months ago - 6 comments

#7271 - add SoftclDiceLoss and SoftDiceclDiceLoss loss function in documentation

Pull Request - State: closed - Opened by ytl0623 10 months ago - 2 comments

#7270 - DataLoader Error after few epochs

Issue - State: closed - Opened by YazdanSalimi 10 months ago - 1 comment

#7268 - Quote $PY_EXE variable to deal with Python path that contain spaces in Bash

Pull Request - State: closed - Opened by ytl0623 10 months ago - 9 comments

#7266 - Skip Old Pytorch Versions for `SwinUNETR`

Pull Request - State: closed - Opened by KumoLiu 10 months ago - 3 comments

#7265 - Checkpoint Function Not Well Tested For Old Pytorch Versions

Issue - State: closed - Opened by ericspod 10 months ago - 1 comment

#7264 - DynUNet training pipeline fails on custom dataset (StopIteration exception)

Issue - State: closed - Opened by ckolluru 10 months ago - 2 comments

#7263 - Add diffusion regularizer for image registration

Issue - State: closed - Opened by kvttt 10 months ago
Labels: Feature request

#7262 - Fix B026 unrecommanded star-arg unpacking after a keyword argument

Pull Request - State: closed - Opened by KumoLiu 10 months ago - 1 comment

#7261 - B026 unrecommanded star-arg unpacking after a keyword argument

Issue - State: closed - Opened by KumoLiu 10 months ago
Labels: bug

#7260 - 6676 port generative networks autoencoderkl

Pull Request - State: closed - Opened by marksgraham 10 months ago - 7 comments

#7256 - RuntimeError

Issue - State: closed - Opened by Zhongrocky 10 months ago - 2 comments

#7255 - 7254 fix crop center correction

Pull Request - State: open - Opened by ltetrel 10 months ago - 1 comment

#7254 - Invalid shape sample from RandCropByLabelClasses

Issue - State: closed - Opened by ltetrel 10 months ago - 12 comments
Labels: enhancement, Design discussions

#7253 - Rename `optional_packages_version` to `required_packages_version`

Pull Request - State: closed - Opened by KumoLiu 10 months ago - 7 comments

#7250 - CI/CD Improvements

Issue - State: closed - Opened by ericspod 11 months ago - 2 comments
Labels: enhancement, CI/CD

#7249 - add class label option to write metric report to improve readability …

Pull Request - State: closed - Opened by elitap 11 months ago - 2 comments

#7248 - Remove all absolute path in Auto3DSeg

Issue - State: open - Opened by mingxin-zheng 11 months ago
Labels: enhancement

#7247 - auto updates

Pull Request - State: closed - Opened by monai-bot 11 months ago - 1 comment

#7246 - DenseNet121 failing to register in AzureML using mlflow

Issue - State: closed - Opened by kavmar 11 months ago - 6 comments

#7245 - :memo: [array] Add examples for EnsureType and CastToType

Pull Request - State: closed - Opened by ishandutta0098 11 months ago - 2 comments

#7244 - :hammer: [dataset] Handle corrupted cached file in PersistentDataset

Pull Request - State: closed - Opened by ishandutta0098 11 months ago - 3 comments

#7243 - Same values returned from different confusion_matrix

Issue - State: closed - Opened by al3ms 11 months ago - 4 comments

#7240 - Documentation about what parameters can be overrides in Auto3dSeg

Issue - State: open - Opened by KumoLiu 11 months ago - 7 comments
Labels: documentation, enhancement

#7239 - add Yun Liu to user list to trigger blossom-ci [skip ci]

Pull Request - State: closed - Opened by YanxuanLiu 11 months ago - 2 comments

#7238 - Auto3dseg error using multiple GPUs

Issue - State: open - Opened by pwrightkcl 11 months ago - 12 comments
Labels: question, need discussions

#7236 - Using the MonAi procedure causes the following error

Issue - State: closed - Opened by StayNightShip 11 months ago - 1 comment

#7235 - SegResNet in 1D not supported yet

Issue - State: closed - Opened by nvahmadi 11 months ago - 1 comment
Labels: enhancement, Contribution wanted

#7234 - Replace single quotation marks with double quotation marks to install…

Pull Request - State: closed - Opened by ytl0623 11 months ago - 3 comments

#7233 - Spacing Transform only rescales spacing on 2 out of 3 Dimensions

Issue - State: closed - Opened by leopold-franz 11 months ago - 1 comment

#7231 - Fixup mypy 1.7.0 errors

Pull Request - State: closed - Opened by Shadow-Devil 11 months ago - 2 comments

#7230 - MyPy 1.7.0 typing errors

Issue - State: closed - Opened by Shadow-Devil 11 months ago

#7227 - Refactor additions from Generative module

Issue - State: open - Opened by marksgraham 11 months ago - 8 comments
Labels: enhancement, refactor

#7226 - Question on mutable default values

Issue - State: closed - Opened by function2-llx 11 months ago

#7225 - Enhance deepedit transforms to do label check

Issue - State: closed - Opened by yiheng-wang-nv 11 months ago - 3 comments
Labels: enhancement

#7222 - auto3dseg analyzer incorrectly computes size of images, rounds to integers

Issue - State: closed - Opened by jpsacha 11 months ago - 5 comments
Labels: need discussions

#7220 - Improve documentation: Transform parameters with multiple keys

Issue - State: closed - Opened by msseibel 11 months ago - 2 comments

#7217 - fix useless error msg in nnunetv2runner

Pull Request - State: closed - Opened by elitap 11 months ago - 1 comment

#7215 - Split Forward Pass of Feature Maps in 3D Convolution

Pull Request - State: open - Opened by dongyang0122 11 months ago

#7213 - Update bug_report.md

Pull Request - State: closed - Opened by dzenanz 11 months ago - 3 comments

#7212 - Cannot load weights in MONAI 1.3 created with 1.2

Issue - State: closed - Opened by dzenanz 11 months ago - 1 comment

#7210 - Failed to run inference in MONAI Label Server - Slicer

Issue - State: closed - Opened by annkapopp 11 months ago - 1 comment

#7209 - Create memory-friendly layers in MONAI to enable 3D large tensors

Issue - State: open - Opened by dongyang0122 11 months ago
Labels: Feature request

#7207 - Shape of class_weight in FocalLoss changed after saving checkpoint.

Issue - State: open - Opened by Hsuxu 11 months ago - 2 comments
Labels: enhancement

#7206 - Random folding in Auto3DSeg `AutoRunner` doesn't acknowledge `num_fold` input

Issue - State: open - Opened by drbeh 11 months ago - 1 comment
Labels: enhancement

#7205 - Expose EnesembleRunner in AutoRunner

Pull Request - State: closed - Opened by drbeh 11 months ago - 1 comment

#7204 - Ensemble Outputs for AutoRunner

Issue - State: closed - Opened by drbeh 11 months ago - 1 comment
Labels: enhancement

#7203 - auto updates

Pull Request - State: closed - Opened by monai-bot 11 months ago - 1 comment

#7198 - 2872 implementation of mixup, cutmix and cutout

Pull Request - State: closed - Opened by juampatronics 11 months ago - 8 comments

#7197 - Add VoxelMorph tutorial

Issue - State: closed - Opened by kvttt 11 months ago - 1 comment
Labels: Feature request

#7196 - [WIP]Ports generative networks

Pull Request - State: closed - Opened by marksgraham 11 months ago - 9 comments

#7195 - add support of [skip ci] in PR titles for skipping the premerge pipelines

Issue - State: open - Opened by wyli 11 months ago
Labels: Feature request, CI/CD

#7193 - cldice loss documentation

Issue - State: closed - Opened by wyli 11 months ago
Labels: documentation, good first issue, Contribution wanted

#7192 - Bug report

Issue - State: closed - Opened by iffthomas 11 months ago - 1 comment

#7190 - NN-UNet

Issue - State: closed - Opened by iffthomas 11 months ago - 1 comment

#7187 - Precision issue in `get_confusion_matrix `

Pull Request - State: closed - Opened by KumoLiu 11 months ago - 2 comments

#7186 - Float precision issue in get_confusion_matrix

Issue - State: closed - Opened by catherinetaylor2 11 months ago
Labels: bug

#7185 - 4d nifti files cannot load successfully

Issue - State: closed - Opened by windyjunfeng 11 months ago - 3 comments

#7184 - AttributeError: 'DintsAlgo' object has no attribute 'mlflow_tracking_uri'

Issue - State: closed - Opened by KumoLiu 11 months ago - 1 comment
Labels: bug

#7183 - Auto3DSeg's subprocess.run should collect error output

Issue - State: closed - Opened by dzenanz 11 months ago - 1 comment

#7182 - 5394 enable py311 tests

Pull Request - State: closed - Opened by wyli 11 months ago - 2 comments

#7181 - 6627 reading dcm folder filtering filenames

Pull Request - State: closed - Opened by wyli 11 months ago - 3 comments

#7180 - Add cache option in `GridPatchDataset`

Pull Request - State: closed - Opened by KumoLiu 11 months ago - 4 comments

#7179 - Bump actions/checkout from 3 to 4 [skip ci]

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 3 comments
Labels: dependencies

#7178 - Implemented VoxelMorph

Pull Request - State: closed - Opened by kvttt 11 months ago - 11 comments

#7176 - [Auto3DSeg] Add mlflow support in autorunner.

Pull Request - State: closed - Opened by dongyang0122 11 months ago - 8 comments

#7175 - autorunner params from config

Pull Request - State: closed - Opened by myron 11 months ago - 6 comments

#7173 - auto updates

Pull Request - State: closed - Opened by monai-bot 11 months ago - 1 comment

#7171 - runtime error trying to resize storage that is not resizable

Issue - State: closed - Opened by SnoopyXI 11 months ago - 7 comments

#7169 - Add a marching cube transform to get surface representations

Issue - State: open - Opened by rcremese 11 months ago
Labels: Feature request

#7168 - Enable Chaining in Auto3DSeg CLI

Pull Request - State: closed - Opened by drbeh 11 months ago - 1 comment

#7167 - Auto3DSeg AutoRunner Fire CLI Chaining Fails

Issue - State: closed - Opened by drbeh 11 months ago

#7165 - simplify `list_data_collate` and `collate_meta_tensor`

Pull Request - State: closed - Opened by KumoLiu 11 months ago - 2 comments

#7164 - Error when build docs

Issue - State: closed - Opened by KumoLiu 11 months ago

#7163 - Support return dice for each class in `DiceMetric`

Pull Request - State: closed - Opened by KumoLiu 11 months ago - 1 comment

#7162 - Get Dice for each class in `DiceMetric`

Issue - State: closed - Opened by KumoLiu 11 months ago

#7159 - [WIP] 7145 common factory class

Pull Request - State: closed - Opened by marksgraham 11 months ago - 2 comments

#7158 - Refactor `self.weight` in `DiceLoss` and `FocalLoss`

Pull Request - State: closed - Opened by KumoLiu 11 months ago - 2 comments

#7157 - partition_dataset_classes should output the partitioned labels too

Issue - State: closed - Opened by JHancox 11 months ago - 1 comment
Labels: enhancement

#7155 - auto updates

Pull Request - State: closed - Opened by monai-bot 12 months ago - 1 comment

#7153 - (WIP) onnx export 2nd batch

Pull Request - State: open - Opened by liqunfu 12 months ago

#7150 - Lazy Resampling Roadmap (1.4+)

Issue - State: closed - Opened by atbenmurray 12 months ago - 1 comment

#7149 - Bug in SwinUNETR

Issue - State: closed - Opened by dmus 12 months ago - 1 comment

#7148 - Using keys in .npz files for `NumpyReader`

Pull Request - State: closed - Opened by KumoLiu 12 months ago - 1 comment

#7147 - Bug: NumpyReader for .npz files with variable names.

Issue - State: closed - Opened by mandelkow 12 months ago

#7146 - `Lazy=True` ignored when using nested `Compose`

Issue - State: open - Opened by KumoLiu 12 months ago - 6 comments
Labels: bug

#7144 - 7143 fixes resnet pretrained test

Pull Request - State: closed - Opened by wyli 12 months ago - 2 comments