Ecosyste.ms: Issues

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GitHub / Project-MONAI/MONAI issues and pull requests

#4863 - Rename `Transpose` to `Permute` to Reflect Behaviour

Issue - State: open - Opened by ericspod almost 2 years ago - 3 comments
Labels: Feedback welcomed, need discussions

#4823 - 4822 remove deprecated class call in `EnsureChannelFirst`

Pull Request - State: closed - Opened by KumoLiu almost 2 years ago - 7 comments

#4700 - built-in option of `FromMetaTensor` in LoadImage?

Issue - State: open - Opened by wyli almost 2 years ago
Labels: Feature request

#4647 - Multi instance learning with data from multiple files

Issue - State: closed - Opened by ChristianEschen almost 2 years ago - 5 comments
Labels: Feature request

#4624 - Random cropping with scaling option for super-resolution data augmentation

Issue - State: open - Opened by masadcv about 2 years ago - 5 comments
Labels: Contribution wanted, Feature request

#4622 - profiling the image reader/writer

Issue - State: open - Opened by wyli about 2 years ago - 1 comment
Labels: Feature request

#4491 - Extend/correct behaviour of RandAffined to allow for different input shapes

Issue - State: closed - Opened by josegcpa about 2 years ago - 3 comments
Labels: Feature request

#4411 - Implementation of the skeletonisation of the prediction - to be used for centre line DSC

Issue - State: closed - Opened by csudre about 2 years ago - 1 comment
Labels: Module: metrics, Feature request, WG: Evaluation

#4372 - MONAI Dataset objects incompatible with `torch.utils.data.BatchSampler`

Issue - State: open - Opened by ericspod about 2 years ago
Labels: Feature request

#4240 - [DO NOT REVIEW] dummy test: verify blackduck status [skip ci]

Pull Request - State: closed - Opened by pxLi about 2 years ago - 4 comments

#4232 - Packaging C++ functions in MONAI

Issue - State: closed - Opened by masadcv about 2 years ago - 15 comments
Labels: Feature request

#4211 - [WIP] 90 dense vnet

Pull Request - State: open - Opened by dwml about 2 years ago - 3 comments

#4205 - Implementation of boundary-aware ShapeLoss

Pull Request - State: open - Opened by arnauddhaene about 2 years ago - 4 comments
Labels: Feature request

#4204 - Implementation of boundary-aware shape loss

Issue - State: open - Opened by arnauddhaene about 2 years ago
Labels: Feature request

#4193 - MaskedLoss is confusing/incorrect

Issue - State: closed - Opened by razorx89 about 2 years ago - 7 comments
Labels: bug, enhancement, Feature request

#4135 - LoadImage and SaveImage using network source (S3 or Google Cloud Storage)

Issue - State: closed - Opened by karwojan about 2 years ago - 5 comments
Labels: Feature request

#4111 - developer's guide for network architectures

Issue - State: open - Opened by wyli about 2 years ago - 2 comments
Labels: documentation, Feature request

#4078 - Cuda morphological hausdorff

Pull Request - State: open - Opened by jakubMitura14 about 2 years ago - 17 comments

#4068 - Add the boundary enhancement loss implementation for 2D/3D medical image segmentation

Issue - State: open - Opened by dongyang0122 about 2 years ago
Labels: enhancement, Feature request

#4067 - Add tutorials for the T-AutoML model searching/training/validation

Issue - State: open - Opened by dongyang0122 about 2 years ago
Labels: Feature request

#4066 - Add the predictor-based search algorithm

Issue - State: open - Opened by dongyang0122 about 2 years ago
Labels: Feature request

#4065 - Add architecture search space with various network connections

Issue - State: open - Opened by dongyang0122 about 2 years ago
Labels: Feature request

#4064 - Add tutorials for DARTS model search/training/validation

Issue - State: open - Opened by dongyang0122 about 2 years ago
Labels: Feature request

#4063 - Create DARTS based networks for segmentation/classification

Issue - State: open - Opened by dongyang0122 about 2 years ago
Labels: Feature request

#4062 - Add/verify search cells for various operations

Issue - State: open - Opened by dongyang0122 about 2 years ago
Labels: Feature request

#4059 - Cache non-deterministic transforms for SmartCacheDataset

Issue - State: closed - Opened by EdvardGrodem about 2 years ago - 4 comments
Labels: Feature request, Feedback welcomed

#4049 - Expanded Discussion of Tensor Type/Format/Modality in Bundle Definition

Issue - State: closed - Opened by ericspod over 2 years ago - 3 comments
Labels: Feature request, Bundles

#4042 - Automatically download / upload models with hugging face, torch hub

Issue - State: closed - Opened by Nic-Ma over 2 years ago - 2 comments
Labels: Feature request, Bundles

#4027 - Applying Transform Chain to Geometric Objects

Issue - State: open - Opened by vikashg over 2 years ago - 14 comments
Labels: enhancement, Module: data, Module: transform, Feature request, WG: Transforms

#4015 - Develop a dataset for global stain extraction

Issue - State: open - Opened by drbeh over 2 years ago
Labels: Feature request, Pathology/Microscopy

#4006 - Generalized Stain Normalization

Issue - State: open - Opened by drbeh over 2 years ago - 2 comments
Labels: Feature request, Pathology/Microscopy

#3947 - ViT pre-trained for 3D images

Issue - State: closed - Opened by phcerdan over 2 years ago - 4 comments
Labels: question

#3938 - MILModel does not fully support torchscript

Issue - State: open - Opened by yiheng-wang-nv over 2 years ago
Labels: enhancement

#3848 - Pathology Raw Annotations to Patch-level Annotations

Issue - State: open - Opened by drbeh over 2 years ago
Labels: enhancement, Feature request

#3831 - Rotate with nearest filter does not return same dtype

Issue - State: closed - Opened by razorx89 over 2 years ago - 3 comments
Labels: bug

#3808 - Add transform to ignore tumors smaller than x mm^3

Issue - State: closed - Opened by Nic-Ma over 2 years ago - 4 comments
Labels: Feature request

#3805 - Non-breaking refactoring of the array transforms to dispatch by input data type (and by additional info.)

Issue - State: closed - Opened by wyli over 2 years ago
Labels: Design discussions, Feature request, Feedback welcomed

#3781 - Downsampling Augmentation Transform

Issue - State: closed - Opened by lyndonboone over 2 years ago - 9 comments
Labels: Contribution wanted, Feature request

#3779 - Dall-e - Image Transformers Collaboration

Issue - State: open - Opened by JP-MRPhys over 2 years ago
Labels: Feature request, Feedback welcomed, community

#3775 - a "team" in readme/website

Issue - State: open - Opened by wyli over 2 years ago
Labels: Feature request

#3747 - Enhance error message according to feedback in Youtube channel

Issue - State: closed - Opened by Nic-Ma over 2 years ago - 8 comments
Labels: enhancement

#3716 - 3D Densenet does not support deterministic training in GPU mode

Issue - State: closed - Opened by yiheng-wang-nv over 2 years ago - 2 comments
Labels: enhancement

#3505 - Refactor Stain Normalization

Pull Request - State: open - Opened by drbeh over 2 years ago - 6 comments
Labels: Pathology/Microscopy

#3481 - Introduce Boundary loss and Hausdorff loss

Issue - State: closed - Opened by tomvars over 2 years ago - 3 comments
Labels: Contribution wanted, Feature request

#3339 - RandAffined does not work for differently sized images

Issue - State: closed - Opened by Spenhouet over 2 years ago - 5 comments
Labels: enhancement

#3328 - Heatmap generation transforms

Issue - State: open - Opened by masadcv over 2 years ago - 6 comments
Labels: Contribution wanted, Feature request

#3328 - Heatmap generation transforms

Issue - State: open - Opened by masadcv over 2 years ago - 6 comments
Labels: Contribution wanted, Feature request

#3201 - g++ error: no such file or directory (To build with MONAI Cpp/CUDA extensions)

Issue - State: closed - Opened by hired-ld over 2 years ago - 4 comments

#3182 - CropForegroundd only works for image with same size and orientation

Issue - State: closed - Opened by Spenhouet over 2 years ago - 10 comments
Labels: question

#3116 - epoch durations significantly increase over time when using cached datasets?!

Issue - State: open - Opened by neuronflow over 2 years ago - 15 comments
Labels: question

#3032 - Interpretability of Segmentation UNet

Issue - State: closed - Opened by wyli almost 3 years ago - 2 comments
Labels: Contribution wanted, Feature request

#3031 - Monai generates lots of Pyright/pylance errors (reportPrivateImportUsage)

Issue - State: closed - Opened by dyollb almost 3 years ago - 6 comments
Labels: question

#2872 - Support Mixup and Cutmix transformation

Issue - State: closed - Opened by JiYuanFeng almost 3 years ago - 13 comments
Labels: Contribution wanted, Feature request

#2872 - Support Mixup and Cutmix transformation

Issue - State: closed - Opened by JiYuanFeng almost 3 years ago - 13 comments
Labels: Contribution wanted, Feature request

#2823 - type annotation `NdarrayOrTensor`

Issue - State: closed - Opened by wyli almost 3 years ago - 4 comments
Labels: enhancement

#2737 - Determine 1-2 tutorials per user persona and validate

Issue - State: open - Opened by zephyrie almost 3 years ago
Labels: enhancement, CookBook

#2646 - porting the polynomials into monai using pytorch

Issue - State: closed - Opened by wyli almost 3 years ago - 1 comment
Labels: Contribution wanted, Feature request

#2566 - Registration benchmark - BendingEnergyLoss

Issue - State: closed - Opened by kate-sann5100 almost 3 years ago - 1 comment
Labels: Feature request

#2565 - Registration benchmarking - image loss

Issue - State: closed - Opened by kate-sann5100 almost 3 years ago - 2 comments
Labels: Feature request

#2250 - MONAI's CRF takes too long on CPU

Issue - State: closed - Opened by masadcv about 3 years ago - 5 comments
Labels: question

#2245 - RandFlip operates on all axes or none

Issue - State: closed - Opened by rijobro about 3 years ago - 1 comment
Labels: enhancement

#2210 - ProbMapProducer on multi-gpu inference

Issue - State: closed - Opened by ZiyueXu77 about 3 years ago - 3 comments
Labels: enhancement

#2127 - Evidencial Fully Convolutional Network

Issue - State: open - Opened by paul-bd about 3 years ago - 3 comments
Labels: Contribution wanted, Feature request

#2112 - 2111 - adds a `map_items` option to compose

Pull Request - State: closed - Opened by wyli about 3 years ago - 2 comments

#2080 - Program freezes when using DDP training

Issue - State: closed - Opened by sandylaker about 3 years ago - 5 comments
Labels: Contribution wanted, Upstream fix required

#2024 - Non determinism in CRF algorithm on certain configurations.

Issue - State: closed - Opened by charliebudd about 3 years ago
Labels: bug

#1984 - initialising 3D classification models from the 2D pretrained

Issue - State: closed - Opened by wyli about 3 years ago - 6 comments
Labels: Module: networks, Feature request

#1964 - Gradient handling in Workflows

Issue - State: closed - Opened by danieltudosiu about 3 years ago - 4 comments
Labels: question, WG: Research

#1656 - How to open dicom with LoadImage() from Tempfile

Issue - State: closed - Opened by tugot17 over 3 years ago - 2 comments
Labels: question, WG: IO

#1568 - test cases should not change the global random states

Issue - State: closed - Opened by wyli over 3 years ago - 2 comments
Labels: enhancement, CI/CD

#1462 - release precompiled binaries

Issue - State: closed - Opened by wyli over 3 years ago - 1 comment
Labels: Feature request, CI/CD, Packaging

#1417 - Make `spatial_gradient` a transform

Issue - State: closed - Opened by tvercaut over 3 years ago - 3 comments
Labels: Feature request

#1332 - Versatile distance transforms (Euclidean and Geodesic)

Issue - State: open - Opened by tvercaut over 3 years ago - 8 comments
Labels: Module: transform, Module: networks, Feature request, WG: Transforms, WG: Research

#1205 - [Feature request] Volumetric Detection Ops

Issue - State: closed - Opened by mibaumgartner over 3 years ago - 4 comments
Labels: Module: transform, Module: networks, Contribution wanted, Feature request

#1180 - Automatic continuation of training from latest checkpoint

Issue - State: closed - Opened by Irme over 3 years ago - 9 comments
Labels: Contribution wanted, Feature request

#1143 - Data Parallel without excessive gathering and scattering

Issue - State: closed - Opened by danieltudosiu over 3 years ago - 4 comments
Labels: Contribution wanted, Feature request

#1039 - Mean Hausdorff metric/loss function

Issue - State: closed - Opened by Dale-Black almost 4 years ago - 9 comments
Labels: Module: metrics, Module: networks, Feature request, WG: Evaluation

#924 - Meta Learning Module

Issue - State: closed - Opened by Vector-Wang almost 4 years ago - 4 comments
Labels: Contribution wanted, WG: Research

#807 - Training instability with Dice Loss/Tversky Loss

Issue - State: closed - Opened by martaranzini almost 4 years ago - 38 comments
Labels: bug

#789 - CUDA implementation of higher-order image resampling (e.g. cubic spline)

Issue - State: closed - Opened by tvercaut almost 4 years ago - 2 comments
Labels: Module: transform, Module: networks, Feature request, WG: Transforms

#528 - Class API for Visualize Module

Issue - State: closed - Opened by abpwrs about 4 years ago - 7 comments
Labels: Feature request, WG: Evaluation

#519 - radiogenomic-gan

Issue - State: closed - Opened by gagandaroach about 4 years ago - 1 comment
Labels: Feature request, WG: Research

#464 - Question about U-net architecture for segmentation

Issue - State: closed - Opened by joriswuts about 4 years ago - 10 comments
Labels: question

#464 - Question about U-net architecture for segmentation

Issue - State: closed - Opened by joriswuts about 4 years ago - 10 comments
Labels: question

#315 - Fully-connected 3D CRF

Issue - State: closed - Opened by LucasFidon about 4 years ago - 12 comments
Labels: Feature request

#229 - Structured changelog and sync with GitHub release notes

Issue - State: closed - Opened by tvercaut over 4 years ago - 3 comments
Labels: Low risk, CI/CD

#189 - differentiable transforms

Issue - State: closed - Opened by mhubii over 4 years ago - 9 comments
Labels: Feature request, WG: Transforms

#178 - spatial downsampling with antialiasing

Issue - State: closed - Opened by wyli over 4 years ago - 1 comment
Labels: Contribution wanted, Feature request

#94 - Port deepmedic

Issue - State: closed - Opened by wyli over 4 years ago - 5 comments
Labels: Contribution wanted

#90 - Port dense v-net

Issue - State: closed - Opened by wyli over 4 years ago - 3 comments
Labels: Contribution wanted