Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Project-MONAI/MONAI issues and pull requests
#6338 - remove deprecated 'by_case' in data analyzer .yaml output
Issue -
State: closed - Opened by wyli about 1 year ago
Labels: Feature request
#6331 - return the spatial transform parameters in registration networks
Issue -
State: closed - Opened by wyli about 1 year ago
Labels: Contribution wanted, Feature request
#6323 - test networks with test_onnx_save
Pull Request -
State: closed - Opened by liqunfu about 1 year ago
- 3 comments
#6321 - saveimaged saving 2D masks in nifti format flipped
Issue -
State: closed - Opened by OmarAshkar about 1 year ago
#6311 - IntegrationClassification2D timeout
Issue -
State: closed - Opened by wyli about 1 year ago
- 4 comments
#6311 - IntegrationClassification2D timeout
Issue -
State: closed - Opened by wyli about 1 year ago
- 4 comments
#6305 - Weights & Biases handlers for MonAI
Pull Request -
State: closed - Opened by soumik12345 over 1 year ago
- 11 comments
#6281 - Remove deprecated `AsChannelFirst` and `AsChannelFirstd`
Pull Request -
State: open - Opened by drbeh over 1 year ago
- 4 comments
#6280 - Ensure anything deprecated since 0.8 is removed
Issue -
State: open - Opened by drbeh over 1 year ago
- 5 comments
#6275 - Add API to locate package modules
Issue -
State: closed - Opened by Nic-Ma over 1 year ago
Labels: Feature request
#6267 - RuntimeError: SSIMLoss 3 Channel; 2D
Issue -
State: closed - Opened by a-parida12 over 1 year ago
- 8 comments
#6257 - Lazy eval refactor
Pull Request -
State: closed - Opened by atbenmurray over 1 year ago
- 33 comments
#6230 - optionally skip logging when rank >0
Issue -
State: closed - Opened by wyli over 1 year ago
- 8 comments
Labels: Contribution wanted, Feature request
#6225 - Support for `ImageReader` in `SlidingWindowSplitter`
Issue -
State: open - Opened by drbeh over 1 year ago
Labels: enhancement, Feature request
#6222 - spatial resample -- adaptive padding mode when switching the backends
Issue -
State: closed - Opened by wyli over 1 year ago
- 1 comment
Labels: Contribution wanted, Feature request
#6220 - [WIP] add `FLStatsHandler`
Pull Request -
State: closed - Opened by KumoLiu over 1 year ago
- 3 comments
#6220 - [WIP] add `FLStatsHandler`
Pull Request -
State: closed - Opened by KumoLiu over 1 year ago
- 3 comments
#6185 - Benchmark on AMOS dataset
Issue -
State: open - Opened by heyufan1995 over 1 year ago
Labels: enhancement
#6178 - Add dynamic segmentor and controller
Issue -
State: open - Opened by tangy5 over 1 year ago
Labels: Feature request
#6167 - ResourceWarning: Implicitly cleaning up
Issue -
State: open - Opened by wyli over 1 year ago
- 2 comments
Labels: bug
#6161 - Add supports for AMD GPU
Pull Request -
State: open - Opened by yaomingamd over 1 year ago
- 5 comments
#6156 - benchmark/tutorial lazy resampling components and workflows
Issue -
State: closed - Opened by wyli over 1 year ago
#6152 - testing with pytorch 2.0
Issue -
State: closed - Opened by wyli over 1 year ago
- 1 comment
#6151 - releasing v1.2 -- checklist
Issue -
State: open - Opened by wyli over 1 year ago
#6123 - `collate_meta_tensor` to handle varying metadata keys
Issue -
State: closed - Opened by wyli over 1 year ago
- 6 comments
Labels: Contribution wanted, Feature request
#6119 - Including Windows BUILD_MONAI instructions in documentation
Issue -
State: open - Opened by masadcv over 1 year ago
- 1 comment
Labels: bug, Contribution wanted
#6118 - Install Monai with all dependencies on windows following the documentation
Issue -
State: closed - Opened by bpavie over 1 year ago
- 5 comments
Labels: Contribution wanted, Feature request
#6116 - A Dropout rate of 50% is systematically applied in the V-Net even when dropout_prob is set to 0
Issue -
State: closed - Opened by BLmbert over 1 year ago
- 2 comments
Labels: enhancement, Contribution wanted
#6107 - WSI sliding window splitter
Pull Request -
State: open - Opened by drbeh over 1 year ago
- 12 comments
#6100 - Add gradient accumulation functionality to SupervisedTrainer
Issue -
State: open - Opened by jak0bw over 1 year ago
- 1 comment
Labels: Contribution wanted
#6082 - `GridPatch` with `pin_memory=True` significant slow-down in following epochs
Issue -
State: open - Opened by drbeh over 1 year ago
- 4 comments
Labels: bug, Contribution wanted
#6079 - Make Dints TensorRT Convertable
Issue -
State: open - Opened by binliunls over 1 year ago
- 5 comments
Labels: Feature request
#6064 - Use a different unit rather than 'level' for pathology image resolution
Issue -
State: open - Opened by JHancox over 1 year ago
- 3 comments
Labels: Feature request, Pathology/Microscopy
#6062 - Affine transformation order in AffineGrid wrong?
Issue -
State: open - Opened by Spenhouet over 1 year ago
- 5 comments
Labels: Contribution wanted, community, need discussions
#6061 - Affine and Affined return the affine of the transform instead of the result image
Issue -
State: closed - Opened by Spenhouet over 1 year ago
- 2 comments
#6054 - Integrate AzureML functionality into Auto3dSeg
Issue -
State: open - Opened by peterhessey over 1 year ago
- 2 comments
Labels: Contribution wanted, Feature request
#6047 - Fix unused arg in `SlidingPatchWSIDataset`
Pull Request -
State: closed - Opened by drbeh over 1 year ago
- 6 comments
#6046 - Improve HoVerNet postprocessing performance
Issue -
State: open - Opened by drbeh over 1 year ago
- 12 comments
Labels: enhancement, Pathology/Microscopy
#6043 - Consider adding support for PyTorch on Apple M1/M2 MPS enabled devices
Issue -
State: closed - Opened by dazzag24 over 1 year ago
- 1 comment
Labels: Contribution wanted, Upstream fix required
#6011 - Full lazy resampling implementation
Pull Request -
State: closed - Opened by atbenmurray over 1 year ago
- 12 comments
#5994 - 5809 hedjitter
Pull Request -
State: open - Opened by Ycblue over 1 year ago
- 6 comments
#5985 - need commercial friendly pre-trained weights for endoscopic_tool_segmentation bundle and example
Issue -
State: open - Opened by daguangxu over 1 year ago
Labels: Bundles
#5938 - feature request : please add cldice loss
Issue -
State: closed - Opened by dirtycomputer over 1 year ago
- 11 comments
Labels: Contribution wanted, Feature request
#5930 - Multiprocess cache dataset CPU memory usage
Issue -
State: closed - Opened by wyli over 1 year ago
- 10 comments
Labels: bug
#5917 - simplify `list_data_collate` and `collate_meta_tensor ` using `collate`
Issue -
State: closed - Opened by wyli over 1 year ago
- 4 comments
Labels: Contribution wanted, Feature request
#5910 - Can create_multi_gpu_supervised_trainer inherit from monai's SupervisedTrainer instead of Ignite's create_supervised_trainer?
Issue -
State: closed - Opened by chezhia over 1 year ago
- 6 comments
#5899 - Merging/overriding configs with same format in monai bundle run
Issue -
State: closed - Opened by surajpaib over 1 year ago
- 13 comments
Labels: Feature request
#5898 - replace assertion errors and improve error messages
Issue -
State: open - Opened by wyli over 1 year ago
Labels: good first issue, Contribution wanted, Feature request
#5898 - replace assertion errors and improve error messages
Issue -
State: closed - Opened by wyli over 1 year ago
- 2 comments
Labels: good first issue, Contribution wanted, Feature request
#5884 - Fully type annotate any partially typed functions (mypy)
Issue -
State: closed - Opened by Shadow-Devil over 1 year ago
- 1 comment
Labels: Feature request
#5882 - weekly-preview workflow failing
Issue -
State: closed - Opened by Warvito over 1 year ago
- 2 comments
Labels: bug
#5874 - Implement an Gaussian Merger
Issue -
State: open - Opened by drbeh over 1 year ago
- 4 comments
Labels: Feature request
#5873 - Implement a min/max Merger for overlapping patches
Issue -
State: open - Opened by drbeh over 1 year ago
Labels: Feature request
#5857 - runtests.sh does not work on Windows
Issue -
State: open - Opened by dzenanz over 1 year ago
- 1 comment
Labels: bug, Contribution wanted
#5832 - 5831 testing premerge
Pull Request -
State: closed - Opened by wyli over 1 year ago
#5831 - distributed tests premerge OOM
Issue -
State: closed - Opened by wyli over 1 year ago
- 1 comment
#5831 - distributed tests premerge OOM
Issue -
State: closed - Opened by wyli over 1 year ago
- 1 comment
#5821 - Define python level abstraction for a Bundle
Issue -
State: open - Opened by Nic-Ma over 1 year ago
- 8 comments
Labels: Feature request
#5817 - auto3dseg flexibility to override inference parameters for each model in the ensemble
Issue -
State: closed - Opened by wyli over 1 year ago
Labels: Feature request
#5809 - HEDJitter Transform
Issue -
State: open - Opened by Ycblue over 1 year ago
- 12 comments
Labels: Feature request, Pathology/Microscopy
#5804 - simplify the configparser usage to get parsed attributes easily
Issue -
State: closed - Opened by wyli over 1 year ago
- 7 comments
Labels: Feature request
#5800 - [Feature Request]: CLIP Driven Universal Model
Issue -
State: open - Opened by tangy5 over 1 year ago
- 2 comments
Labels: Design discussions, Contribution wanted, Feature request
#5747 - Auto3d Add function to generate the shell scripts which can run separately.
Issue -
State: closed - Opened by AHarouni over 1 year ago
- 2 comments
Labels: enhancement
#5747 - Auto3d Add function to generate the shell scripts which can run separately.
Issue -
State: closed - Opened by AHarouni over 1 year ago
- 2 comments
Labels: enhancement
#5723 - Reloading of corrupted cached files for PersistentDataset
Issue -
State: closed - Opened by Phinnik over 1 year ago
- 4 comments
Labels: good first issue, Contribution wanted, Feature request
#5723 - Reloading of corrupted cached files for PersistentDataset
Issue -
State: open - Opened by Phinnik over 1 year ago
- 4 comments
Labels: good first issue, Contribution wanted, Feature request
#5708 - [Feature request] Expose ITK Image to MONAI MetaTensor conversion
Issue -
State: closed - Opened by ntatsisk over 1 year ago
- 6 comments
Labels: Contribution wanted, Feature request
#5702 - [Feature Request] 3D support for PanopticQualityMetric + provide option to return confusion matrix
Issue -
State: open - Opened by neuronflow over 1 year ago
- 8 comments
Labels: Contribution wanted, Feature request
#5660 - test_smartcachedataset thread hangs occasionally
Issue -
State: closed - Opened by wyli over 1 year ago
- 4 comments
Labels: bug
#5647 - track sub and div and compute the NormalizeIntensity inverse
Issue -
State: open - Opened by wyli over 1 year ago
- 7 comments
Labels: Contribution wanted, Feature request
#5647 - track sub and div and compute the NormalizeIntensity inverse
Issue -
State: open - Opened by wyli over 1 year ago
- 7 comments
Labels: Contribution wanted, Feature request
#5637 - Sunset the mmar tests
Issue -
State: closed - Opened by wyli over 1 year ago
Labels: wontfix
#5632 - CacheDataset preserve cache_num
Pull Request -
State: closed - Opened by myron over 1 year ago
- 6 comments
#5631 - Revise API for algo templates
Issue -
State: closed - Opened by myron over 1 year ago
Labels: enhancement
#5629 - (partly) load weights from a bundle
Issue -
State: closed - Opened by wyli over 1 year ago
- 1 comment
Labels: Feature request
#5564 - Autorunner AlgoEnsemble improvements
Issue -
State: closed - Opened by myron over 1 year ago
- 9 comments
#5511 - Spatial transforms / RandAffined/ Resampler should not change data type
Issue -
State: closed - Opened by myron over 1 year ago
- 2 comments
Labels: bug
#5484 - Adding voxelmorph in MONAI?
Issue -
State: closed - Opened by bhosalems over 1 year ago
- 5 comments
Labels: Contribution wanted, Feature request
#5477 - ResNet implementation: set bias=False for downsample-B
Pull Request -
State: closed - Opened by thatgeeman over 1 year ago
- 12 comments
#5463 - parameter `filepath` of `download_and_extract`
Issue -
State: open - Opened by wyli over 1 year ago
Labels: enhancement, Contribution wanted
#5454 - Low GPU utilization (<40%) with spleen bundle
Issue -
State: open - Opened by AHarouni over 1 year ago
- 1 comment
Labels: enhancement
#5419 - security.md to define how users should report security issues for this repo
Issue -
State: open - Opened by wyli over 1 year ago
Labels: Feature request
#5406 - Padding is unavailable on any model / PR guidance
Issue -
State: closed - Opened by wahabk over 1 year ago
Labels: Contribution wanted, Feature request
#5394 - Python 3.11 support
Issue -
State: closed - Opened by rijobro over 1 year ago
- 3 comments
Labels: Feature request
#5374 - Unify Auto3DSeg BundleGen filepath name
Issue -
State: closed - Opened by mingxin-zheng over 1 year ago
Labels: enhancement
#5336 - There are two risks adding a `transform_list` here:
Issue -
State: closed - Opened by holgerroth over 1 year ago
- 1 comment
Labels: documentation, enhancement, Feature request
#5311 - Integration test for pathology pipelines
Issue -
State: open - Opened by drbeh over 1 year ago
- 4 comments
Labels: Pathology/Microscopy
#5283 - MetaTensor and DistributedDataParallel. bug (SyncBatchNormBackward is a view and is being modified inplace)
Issue -
State: open - Opened by myron over 1 year ago
- 3 comments
Labels: bug
#5281 - Segresnet improvements
Pull Request -
State: closed - Opened by myron over 1 year ago
- 5 comments
#5267 - Include ObjectID for create_test_image_2d
Issue -
State: open - Opened by JHancox over 1 year ago
- 8 comments
Labels: Contribution wanted, Feature request
#5198 - Issue with distributed `SyncBatchNorm` in MIL pipeline
Issue -
State: open - Opened by drbeh almost 2 years ago
- 10 comments
Labels: bug, Pathology/Microscopy
#5172 - FROC metrics for 3D data
Issue -
State: open - Opened by akiliyiu almost 2 years ago
- 2 comments
Labels: Contribution wanted
#5171 - problem for importing monai
Issue -
State: closed - Opened by mfarhadirad almost 2 years ago
- 3 comments
#5157 - test_transchex integration error (transformers v4.22)
Issue -
State: closed - Opened by wyli almost 2 years ago
Labels: dependencies
#5156 - VanillaGrad, SmoothGrad, etc. have crosshatching
Issue -
State: closed - Opened by rijobro almost 2 years ago
- 2 comments
Labels: question
#5135 - RandSpatialCropd cannot be used together with RandCropByLabelClassesd or RandCropByPosNegLabeld
Issue -
State: closed - Opened by akiliyiu almost 2 years ago
- 1 comment
Labels: Module: transform, Feature request
#4980 - `WSIReader` support for reading by mpp or magnification
Issue -
State: open - Opened by drbeh almost 2 years ago
- 10 comments
Labels: Pathology/Microscopy
#4961 - OS Error : broken data stream when reading image file | 2D Image not being read from PIL
Issue -
State: closed - Opened by finalelement almost 2 years ago
- 5 comments
Labels: enhancement
#4942 - Add option to set determinism with bundle configs
Issue -
State: closed - Opened by holgerroth almost 2 years ago
- 8 comments
Labels: Feature request
#4917 - No source for code: '/__w/MONAI/MONAI/config-3.8.py'.
Issue -
State: open - Opened by wyli almost 2 years ago
- 1 comment
Labels: bug, CI/CD