Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Project-MONAI/MONAI issues and pull requests

#6338 - remove deprecated 'by_case' in data analyzer .yaml output

Issue - State: closed - Opened by wyli about 1 year ago
Labels: Feature request

#6331 - return the spatial transform parameters in registration networks

Issue - State: closed - Opened by wyli about 1 year ago
Labels: Contribution wanted, Feature request

#6323 - test networks with test_onnx_save

Pull Request - State: closed - Opened by liqunfu about 1 year ago - 3 comments

#6321 - saveimaged saving 2D masks in nifti format flipped

Issue - State: closed - Opened by OmarAshkar about 1 year ago

#6311 - IntegrationClassification2D timeout

Issue - State: closed - Opened by wyli about 1 year ago - 4 comments

#6311 - IntegrationClassification2D timeout

Issue - State: closed - Opened by wyli about 1 year ago - 4 comments

#6305 - Weights & Biases handlers for MonAI

Pull Request - State: closed - Opened by soumik12345 over 1 year ago - 11 comments

#6281 - Remove deprecated `AsChannelFirst` and `AsChannelFirstd`

Pull Request - State: open - Opened by drbeh over 1 year ago - 4 comments

#6280 - Ensure anything deprecated since 0.8 is removed

Issue - State: open - Opened by drbeh over 1 year ago - 5 comments

#6275 - Add API to locate package modules

Issue - State: closed - Opened by Nic-Ma over 1 year ago
Labels: Feature request

#6267 - RuntimeError: SSIMLoss 3 Channel; 2D

Issue - State: closed - Opened by a-parida12 over 1 year ago - 8 comments

#6257 - Lazy eval refactor

Pull Request - State: closed - Opened by atbenmurray over 1 year ago - 33 comments

#6230 - optionally skip logging when rank >0

Issue - State: closed - Opened by wyli over 1 year ago - 8 comments
Labels: Contribution wanted, Feature request

#6225 - Support for `ImageReader` in `SlidingWindowSplitter`

Issue - State: open - Opened by drbeh over 1 year ago
Labels: enhancement, Feature request

#6222 - spatial resample -- adaptive padding mode when switching the backends

Issue - State: closed - Opened by wyli over 1 year ago - 1 comment
Labels: Contribution wanted, Feature request

#6220 - [WIP] add `FLStatsHandler`

Pull Request - State: closed - Opened by KumoLiu over 1 year ago - 3 comments

#6220 - [WIP] add `FLStatsHandler`

Pull Request - State: closed - Opened by KumoLiu over 1 year ago - 3 comments

#6185 - Benchmark on AMOS dataset

Issue - State: open - Opened by heyufan1995 over 1 year ago
Labels: enhancement

#6178 - Add dynamic segmentor and controller

Issue - State: open - Opened by tangy5 over 1 year ago
Labels: Feature request

#6167 - ResourceWarning: Implicitly cleaning up

Issue - State: open - Opened by wyli over 1 year ago - 2 comments
Labels: bug

#6161 - Add supports for AMD GPU

Pull Request - State: open - Opened by yaomingamd over 1 year ago - 5 comments

#6156 - benchmark/tutorial lazy resampling components and workflows

Issue - State: closed - Opened by wyli over 1 year ago

#6152 - testing with pytorch 2.0

Issue - State: closed - Opened by wyli over 1 year ago - 1 comment

#6151 - releasing v1.2 -- checklist

Issue - State: open - Opened by wyli over 1 year ago

#6123 - `collate_meta_tensor` to handle varying metadata keys

Issue - State: closed - Opened by wyli over 1 year ago - 6 comments
Labels: Contribution wanted, Feature request

#6119 - Including Windows BUILD_MONAI instructions in documentation

Issue - State: open - Opened by masadcv over 1 year ago - 1 comment
Labels: bug, Contribution wanted

#6118 - Install Monai with all dependencies on windows following the documentation

Issue - State: closed - Opened by bpavie over 1 year ago - 5 comments
Labels: Contribution wanted, Feature request

#6116 - A Dropout rate of 50% is systematically applied in the V-Net even when dropout_prob is set to 0

Issue - State: closed - Opened by BLmbert over 1 year ago - 2 comments
Labels: enhancement, Contribution wanted

#6107 - WSI sliding window splitter

Pull Request - State: open - Opened by drbeh over 1 year ago - 12 comments

#6100 - Add gradient accumulation functionality to SupervisedTrainer

Issue - State: open - Opened by jak0bw over 1 year ago - 1 comment
Labels: Contribution wanted

#6082 - `GridPatch` with `pin_memory=True` significant slow-down in following epochs

Issue - State: open - Opened by drbeh over 1 year ago - 4 comments
Labels: bug, Contribution wanted

#6079 - Make Dints TensorRT Convertable

Issue - State: open - Opened by binliunls over 1 year ago - 5 comments
Labels: Feature request

#6064 - Use a different unit rather than 'level' for pathology image resolution

Issue - State: open - Opened by JHancox over 1 year ago - 3 comments
Labels: Feature request, Pathology/Microscopy

#6062 - Affine transformation order in AffineGrid wrong?

Issue - State: open - Opened by Spenhouet over 1 year ago - 5 comments
Labels: Contribution wanted, community, need discussions

#6054 - Integrate AzureML functionality into Auto3dSeg

Issue - State: open - Opened by peterhessey over 1 year ago - 2 comments
Labels: Contribution wanted, Feature request

#6047 - Fix unused arg in `SlidingPatchWSIDataset`

Pull Request - State: closed - Opened by drbeh over 1 year ago - 6 comments

#6046 - Improve HoVerNet postprocessing performance

Issue - State: open - Opened by drbeh over 1 year ago - 12 comments
Labels: enhancement, Pathology/Microscopy

#6043 - Consider adding support for PyTorch on Apple M1/M2 MPS enabled devices

Issue - State: closed - Opened by dazzag24 over 1 year ago - 1 comment
Labels: Contribution wanted, Upstream fix required

#6011 - Full lazy resampling implementation

Pull Request - State: closed - Opened by atbenmurray over 1 year ago - 12 comments

#5994 - 5809 hedjitter

Pull Request - State: open - Opened by Ycblue over 1 year ago - 6 comments

#5938 - feature request : please add cldice loss

Issue - State: closed - Opened by dirtycomputer over 1 year ago - 11 comments
Labels: Contribution wanted, Feature request

#5930 - Multiprocess cache dataset CPU memory usage

Issue - State: closed - Opened by wyli over 1 year ago - 10 comments
Labels: bug

#5917 - simplify `list_data_collate` and `collate_meta_tensor ` using `collate`

Issue - State: closed - Opened by wyli over 1 year ago - 4 comments
Labels: Contribution wanted, Feature request

#5899 - Merging/overriding configs with same format in monai bundle run

Issue - State: closed - Opened by surajpaib over 1 year ago - 13 comments
Labels: Feature request

#5898 - replace assertion errors and improve error messages

Issue - State: open - Opened by wyli over 1 year ago
Labels: good first issue, Contribution wanted, Feature request

#5898 - replace assertion errors and improve error messages

Issue - State: closed - Opened by wyli over 1 year ago - 2 comments
Labels: good first issue, Contribution wanted, Feature request

#5884 - Fully type annotate any partially typed functions (mypy)

Issue - State: closed - Opened by Shadow-Devil over 1 year ago - 1 comment
Labels: Feature request

#5882 - weekly-preview workflow failing

Issue - State: closed - Opened by Warvito over 1 year ago - 2 comments
Labels: bug

#5874 - Implement an Gaussian Merger

Issue - State: open - Opened by drbeh over 1 year ago - 4 comments
Labels: Feature request

#5873 - Implement a min/max Merger for overlapping patches

Issue - State: open - Opened by drbeh over 1 year ago
Labels: Feature request

#5857 - runtests.sh does not work on Windows

Issue - State: open - Opened by dzenanz over 1 year ago - 1 comment
Labels: bug, Contribution wanted

#5832 - 5831 testing premerge

Pull Request - State: closed - Opened by wyli over 1 year ago

#5831 - distributed tests premerge OOM

Issue - State: closed - Opened by wyli over 1 year ago - 1 comment

#5831 - distributed tests premerge OOM

Issue - State: closed - Opened by wyli over 1 year ago - 1 comment

#5821 - Define python level abstraction for a Bundle

Issue - State: open - Opened by Nic-Ma over 1 year ago - 8 comments
Labels: Feature request

#5817 - auto3dseg flexibility to override inference parameters for each model in the ensemble

Issue - State: closed - Opened by wyli over 1 year ago
Labels: Feature request

#5809 - HEDJitter Transform

Issue - State: open - Opened by Ycblue over 1 year ago - 12 comments
Labels: Feature request, Pathology/Microscopy

#5804 - simplify the configparser usage to get parsed attributes easily

Issue - State: closed - Opened by wyli over 1 year ago - 7 comments
Labels: Feature request

#5800 - [Feature Request]: CLIP Driven Universal Model

Issue - State: open - Opened by tangy5 over 1 year ago - 2 comments
Labels: Design discussions, Contribution wanted, Feature request

#5747 - Auto3d Add function to generate the shell scripts which can run separately.

Issue - State: closed - Opened by AHarouni over 1 year ago - 2 comments
Labels: enhancement

#5747 - Auto3d Add function to generate the shell scripts which can run separately.

Issue - State: closed - Opened by AHarouni over 1 year ago - 2 comments
Labels: enhancement

#5723 - Reloading of corrupted cached files for PersistentDataset

Issue - State: closed - Opened by Phinnik over 1 year ago - 4 comments
Labels: good first issue, Contribution wanted, Feature request

#5723 - Reloading of corrupted cached files for PersistentDataset

Issue - State: open - Opened by Phinnik over 1 year ago - 4 comments
Labels: good first issue, Contribution wanted, Feature request

#5708 - [Feature request] Expose ITK Image to MONAI MetaTensor conversion

Issue - State: closed - Opened by ntatsisk over 1 year ago - 6 comments
Labels: Contribution wanted, Feature request

#5702 - [Feature Request] 3D support for PanopticQualityMetric + provide option to return confusion matrix

Issue - State: open - Opened by neuronflow over 1 year ago - 8 comments
Labels: Contribution wanted, Feature request

#5660 - test_smartcachedataset thread hangs occasionally

Issue - State: closed - Opened by wyli over 1 year ago - 4 comments
Labels: bug

#5647 - track sub and div and compute the NormalizeIntensity inverse

Issue - State: open - Opened by wyli over 1 year ago - 7 comments
Labels: Contribution wanted, Feature request

#5647 - track sub and div and compute the NormalizeIntensity inverse

Issue - State: open - Opened by wyli over 1 year ago - 7 comments
Labels: Contribution wanted, Feature request

#5637 - Sunset the mmar tests

Issue - State: closed - Opened by wyli over 1 year ago
Labels: wontfix

#5632 - CacheDataset preserve cache_num

Pull Request - State: closed - Opened by myron over 1 year ago - 6 comments

#5631 - Revise API for algo templates

Issue - State: closed - Opened by myron over 1 year ago
Labels: enhancement

#5629 - (partly) load weights from a bundle

Issue - State: closed - Opened by wyli over 1 year ago - 1 comment
Labels: Feature request

#5564 - Autorunner AlgoEnsemble improvements

Issue - State: closed - Opened by myron over 1 year ago - 9 comments

#5511 - Spatial transforms / RandAffined/ Resampler should not change data type

Issue - State: closed - Opened by myron over 1 year ago - 2 comments
Labels: bug

#5484 - Adding voxelmorph in MONAI?

Issue - State: closed - Opened by bhosalems over 1 year ago - 5 comments
Labels: Contribution wanted, Feature request

#5477 - ResNet implementation: set bias=False for downsample-B

Pull Request - State: closed - Opened by thatgeeman over 1 year ago - 12 comments

#5463 - parameter `filepath` of `download_and_extract`

Issue - State: open - Opened by wyli over 1 year ago
Labels: enhancement, Contribution wanted

#5454 - Low GPU utilization (<40%) with spleen bundle

Issue - State: open - Opened by AHarouni over 1 year ago - 1 comment
Labels: enhancement

#5419 - security.md to define how users should report security issues for this repo

Issue - State: open - Opened by wyli over 1 year ago
Labels: Feature request

#5406 - Padding is unavailable on any model / PR guidance

Issue - State: closed - Opened by wahabk over 1 year ago
Labels: Contribution wanted, Feature request

#5394 - Python 3.11 support

Issue - State: closed - Opened by rijobro over 1 year ago - 3 comments
Labels: Feature request

#5374 - Unify Auto3DSeg BundleGen filepath name

Issue - State: closed - Opened by mingxin-zheng over 1 year ago
Labels: enhancement

#5336 - There are two risks adding a `transform_list` here:

Issue - State: closed - Opened by holgerroth over 1 year ago - 1 comment
Labels: documentation, enhancement, Feature request

#5311 - Integration test for pathology pipelines

Issue - State: open - Opened by drbeh over 1 year ago - 4 comments
Labels: Pathology/Microscopy

#5281 - Segresnet improvements

Pull Request - State: closed - Opened by myron over 1 year ago - 5 comments

#5267 - Include ObjectID for create_test_image_2d

Issue - State: open - Opened by JHancox over 1 year ago - 8 comments
Labels: Contribution wanted, Feature request

#5198 - Issue with distributed `SyncBatchNorm` in MIL pipeline

Issue - State: open - Opened by drbeh almost 2 years ago - 10 comments
Labels: bug, Pathology/Microscopy

#5172 - FROC metrics for 3D data

Issue - State: open - Opened by akiliyiu almost 2 years ago - 2 comments
Labels: Contribution wanted

#5171 - problem for importing monai

Issue - State: closed - Opened by mfarhadirad almost 2 years ago - 3 comments

#5157 - test_transchex integration error (transformers v4.22)

Issue - State: closed - Opened by wyli almost 2 years ago
Labels: dependencies

#5156 - VanillaGrad, SmoothGrad, etc. have crosshatching

Issue - State: closed - Opened by rijobro almost 2 years ago - 2 comments
Labels: question

#5135 - RandSpatialCropd cannot be used together with RandCropByLabelClassesd or RandCropByPosNegLabeld

Issue - State: closed - Opened by akiliyiu almost 2 years ago - 1 comment
Labels: Module: transform, Feature request

#4980 - `WSIReader` support for reading by mpp or magnification

Issue - State: open - Opened by drbeh almost 2 years ago - 10 comments
Labels: Pathology/Microscopy

#4961 - OS Error : broken data stream when reading image file | 2D Image not being read from PIL

Issue - State: closed - Opened by finalelement almost 2 years ago - 5 comments
Labels: enhancement

#4942 - Add option to set determinism with bundle configs

Issue - State: closed - Opened by holgerroth almost 2 years ago - 8 comments
Labels: Feature request

#4917 - No source for code: '/__w/MONAI/MONAI/config-3.8.py'.

Issue - State: open - Opened by wyli almost 2 years ago - 1 comment
Labels: bug, CI/CD