Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ProLint/prolint2 issues and pull requests

#92 - notebook access

Issue - State: open - Opened by Nancyarvin 6 months ago

#91 - 89 fix the command line usage

Pull Request - State: closed - Opened by danielpastor97 6 months ago

#89 - Fix the command line usage.

Issue - State: closed - Opened by danielpastor97 7 months ago

#88 - Upgrade to python 3.10

Pull Request - State: closed - Opened by danielpastor97 8 months ago

#87 - Fixing issues in beta release.

Pull Request - State: closed - Opened by danielpastor97 8 months ago
Labels: bug

#86 - Plotting error

Issue - State: closed - Opened by chelsea-brown 10 months ago

#85 - prolint2.plotting error

Issue - State: closed - Opened by amiel-ab about 1 year ago

#84 - Polish docs.

Issue - State: closed - Opened by danielpastor97 about 1 year ago

#83 - Fix command-line version.

Issue - State: closed - Opened by danielpastor97 about 1 year ago
Labels: bug

#82 - Heatmap/contact projection error

Issue - State: closed - Opened by amiel-ab about 1 year ago - 2 comments

#81 - 80 publish v100

Pull Request - State: closed - Opened by danielpastor97 over 1 year ago - 1 comment

#80 - Publish v1.0.0

Issue - State: closed - Opened by bisejdiu over 1 year ago - 2 comments

#79 - Load server data from local file

Issue - State: closed - Opened by bisejdiu over 1 year ago

#78 - Complete Library Overhaul: Refactoring, OOP, Documentation, and API Improvements

Pull Request - State: closed - Opened by bisejdiu over 1 year ago - 2 comments

#77 - Adding visualization functions

Pull Request - State: closed - Opened by danielpastor97 over 1 year ago - 1 comment
Labels: enhancement

#76 - extending contacts

Pull Request - State: closed - Opened by danielpastor97 over 1 year ago - 1 comment
Labels: enhancement

#75 - 72 create getting started notebook

Pull Request - State: closed - Opened by danielpastor97 over 1 year ago - 1 comment

#74 - Improvements to the calculated and displayed metrics

Issue - State: closed - Opened by bisejdiu almost 2 years ago
Labels: enhancement

#73 - Server code overhaul, new application + many fixes

Pull Request - State: closed - Opened by bisejdiu almost 2 years ago

#72 - Create Getting Started notebook.

Issue - State: closed - Opened by danielpastor97 almost 2 years ago
Labels: documentation

#71 - Integrate Server/Dashboard to ProLint

Pull Request - State: closed - Opened by bisejdiu almost 2 years ago - 4 comments

#70 - Create visualization apps to use the software from a jupyter notebook.

Pull Request - State: closed - Opened by danielpastor97 almost 2 years ago - 1 comment

#69 - Updating documentation.

Pull Request - State: closed - Opened by danielpastor97 almost 2 years ago - 1 comment
Labels: enhancement

#68 - adding unittests

Pull Request - State: closed - Opened by danielpastor97 almost 2 years ago - 1 comment
Labels: enhancement

#67 - Add unittests.

Issue - State: closed - Opened by danielpastor97 almost 2 years ago
Labels: enhancement

#66 - 62 define visualization functions and custom metrics

Pull Request - State: closed - Opened by danielpastor97 almost 2 years ago
Labels: enhancement

#65 - fix index of residue index.

Pull Request - State: closed - Opened by danielpastor97 almost 2 years ago - 1 comment
Labels: enhancement

#64 - Fixing residue offset in export function

Pull Request - State: closed - Opened by flop20 almost 2 years ago

#63 - Fix issue with the interactions in the Dashboard.

Issue - State: closed - Opened by danielpastor97 almost 2 years ago
Labels: enhancement

#62 - Define visualization functions and custom metrics.

Issue - State: closed - Opened by danielpastor97 almost 2 years ago
Labels: enhancement

#61 - adding metrics

Pull Request - State: closed - Opened by danielpastor97 about 2 years ago - 2 comments
Labels: enhancement

#60 - 42 adding exporting options

Pull Request - State: closed - Opened by danielpastor97 about 2 years ago

#59 - Update the documentation.

Issue - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#56 - Implement the analysis of membrane curvature.

Issue - State: closed - Opened by danielpastor97 about 2 years ago

#55 - Redefine data structure for the results including different metrics.

Issue - State: closed - Opened by danielpastor97 about 2 years ago - 1 comment
Labels: enhancement

#54 - Include parallelization with Dask.

Issue - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#53 - extra comments in the parser file

Pull Request - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#50 - implementing fixed order of selection groups.

Pull Request - State: closed - Opened by danielpastor97 about 2 years ago
Labels: bug

#49 - 43 fix order of the groups during the interactive selection

Pull Request - State: closed - Opened by danielpastor97 about 2 years ago
Labels: bug

#48 - 40 adding new lipid types with al option in the command line

Pull Request - State: closed - Opened by danielpastor97 about 2 years ago
Labels: bug

#47 - implementing config file

Pull Request - State: closed - Opened by danielpastor97 about 2 years ago

#46 - Self-interactions.

Issue - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#44 - Improve API usage.

Issue - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#43 - Fix order of the groups during the interactive selection.

Issue - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#42 - Adding exporting options.

Issue - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#41 - adding config file to future main.

Issue - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#40 - Adding new lipid types with -al option in the command line.

Issue - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#39 - Implement a contact network application

Pull Request - State: closed - Opened by bisejdiu about 2 years ago
Labels: enhancement

#38 - Demo to release on September 5th, 2022.

Pull Request - State: closed - Opened by danielpastor97 about 2 years ago
Labels: enhancement

#37 - Optimizations, styling and speed improvements

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#36 - Unitests and config file

Pull Request - State: closed - Opened by danielpastor97 over 2 years ago - 1 comment
Labels: enhancement

#35 - include a config file for default parameters.

Issue - State: closed - Opened by danielpastor97 over 2 years ago
Labels: enhancement

#34 - Implement a structure viewer to the dashboard

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#33 - Dashboard styling and layout improvements

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#32 - Implement a heatmap application to show residue-lipid distance array

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#31 - table of top interacting lipids

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#30 - Server ufcc calculations and working ganttApp

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#29 - Resolves server and gantt branches merge conflicts

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#28 - Link server module with main app

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#27 - Improvements to the ufcc contact calculation and retrieval code

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#26 - Server integration

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#25 - Gantt app implementation

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#24 - Protein data integration

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#23 - Pie chart app

Pull Request - State: closed - Opened by bisejdiu over 2 years ago

#22 - Increase the coverage of the tests.

Issue - State: closed - Opened by danielpastor97 over 2 years ago
Labels: enhancement

#21 - Support for logical operations between groups in the interactive selection.

Issue - State: closed - Opened by danielpastor97 over 2 years ago - 1 comment
Labels: enhancement

#20 - interactive selection of groups

Pull Request - State: closed - Opened by danielpastor97 over 2 years ago - 3 comments
Labels: enhancement

#19 - Remove demo branch?

Issue - State: closed - Opened by bisejdiu over 2 years ago - 1 comment

#18 - installation fixed from setup.py

Pull Request - State: closed - Opened by danielpastor97 over 2 years ago - 1 comment

#17 - Update setup.py installation

Issue - State: closed - Opened by bisejdiu over 2 years ago - 1 comment

#16 - including sample data

Pull Request - State: closed - Opened by danielpastor97 over 2 years ago - 1 comment
Labels: enhancement

#15 - CLI prototype and warnings handling

Pull Request - State: closed - Opened by danielpastor97 over 2 years ago - 2 comments
Labels: enhancement

#14 - Add a cli version of the code

Issue - State: closed - Opened by bisejdiu over 2 years ago - 1 comment
Labels: enhancement

#13 - Add contact metrics to the contact calculation routine

Issue - State: closed - Opened by bisejdiu over 2 years ago
Labels: enhancement

#12 - Implement a visualization frontend (dashboard)

Issue - State: closed - Opened by bisejdiu over 2 years ago - 5 comments

#11 - Deal with MDAnalysis warnings when working with Martini model

Issue - State: closed - Opened by bisejdiu over 2 years ago
Labels: enhancement

#10 - Add trajectory information

Issue - State: closed - Opened by bisejdiu over 2 years ago - 1 comment

#9 - Implement support for Index Library

Issue - State: closed - Opened by bisejdiu over 2 years ago
Labels: enhancement

#8 - Loading examples and example files

Issue - State: closed - Opened by bisejdiu over 2 years ago
Labels: enhancement

#7 - export_to_prolintpy method

Issue - State: closed - Opened by danielpastor97 over 2 years ago - 1 comment
Labels: enhancement

#6 - HPC support with the Dask scheduler

Issue - State: closed - Opened by danielpastor97 over 2 years ago
Labels: enhancement

#5 - Include parser

Issue - State: closed - Opened by danielpastor97 over 2 years ago - 1 comment
Labels: enhancement

#4 - Show compute statistics

Issue - State: closed - Opened by bisejdiu over 2 years ago
Labels: enhancement

#3 - fixing dependencies

Pull Request - State: closed - Opened by danielpastor97 over 2 years ago

#2 - Creating basic topology definition

Pull Request - State: closed - Opened by danielpastor97 over 2 years ago

#1 - Adding the contacts class and basic tests.

Issue - State: closed - Opened by danielpastor97 over 2 years ago
Labels: enhancement