Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / PredictiveEcology/reproducible issues and pull requests

#402 - cacheId bugfix

Pull Request - State: closed - Opened by eliotmcintire 14 days ago

#400 - bug in `Cache` when `omitArgs` is specified for an "x" argument

Issue - State: closed - Opened by CeresBarros 2 months ago - 4 comments
Labels: high priority

#399 - minor precision in postProcessTo doc.

Pull Request - State: closed - Opened by CeresBarros 3 months ago

#398 - filename2 fix

Pull Request - State: closed - Opened by ianmseddy 3 months ago

#397 - Documentation misleading or bug?

Issue - State: open - Opened by CeresBarros 4 months ago

#396 - Cache false positive in LandR::prepRawBiomassMap

Issue - State: open - Opened by ianmseddy 4 months ago - 1 comment

#395 - inputPaths fixes

Pull Request - State: closed - Opened by eliotmcintire 4 months ago

#394 - try to get `inputPaths` back to full functionality

Pull Request - State: closed - Opened by eliotmcintire 4 months ago

#393 - preProcess fails when `terra` not installed and `fun = NA`

Issue - State: open - Opened by CeresBarros 4 months ago - 1 comment

#392 - bugfix for Cache edge case Cache( pkg::fun(arg1, arg2) )

Pull Request - State: closed - Opened by eliotmcintire 4 months ago

#391 - inconsistent cache size reporting and management

Issue - State: open - Opened by achubaty 5 months ago - 1 comment

#389 - consider exporting objects being used by `SpaDES.core`

Issue - State: open - Opened by achubaty 5 months ago - 1 comment

#387 - outstanding local test failures for `modsForLargeArchives` branch

Issue - State: closed - Opened by achubaty 5 months ago - 6 comments

#386 - 'crayon' superseded; use 'cli'

Issue - State: open - Opened by achubaty 6 months ago - 1 comment

#385 - Clarified documentation for `prepInputs` and `postProcess`

Pull Request - State: closed - Opened by CeresBarros 7 months ago

#384 - Clarified documentation for `prepInputs(, useCache)`

Pull Request - State: closed - Opened by CeresBarros 7 months ago - 1 comment

#382 - possibly unsafe calls: assignInNamespace on branch modsForLargeArchives

Issue - State: closed - Opened by achubaty 7 months ago - 2 comments

#381 - Update actions to use to 'node20'

Issue - State: closed - Opened by CeresBarros 8 months ago - 1 comment

#380 - Modifications for large archives; other minor changes

Pull Request - State: closed - Opened by eliotmcintire 10 months ago - 1 comment

#379 - Build

Pull Request - State: closed - Opened by tati-micheletti 10 months ago

#378 - Masking RTM erroring outside module, but stalling in a module

Issue - State: closed - Opened by tati-micheletti 10 months ago - 2 comments

#377 - leftover files running R CMD check

Issue - State: closed - Opened by achubaty 11 months ago - 1 comment

#376 - preProcess -- missing archive details when using inputPaths

Pull Request - State: closed - Opened by eliotmcintire 11 months ago

#375 - Filenames arg returnList; wrap/unwrapSpatRaster genericize

Pull Request - State: closed - Opened by eliotmcintire 11 months ago

#373 - Reproducible temp cache dir

Pull Request - State: closed - Opened by tati-micheletti 11 months ago

#371 - partial argument match of 'file' to 'fileFormat'

Issue - State: closed - Opened by achubaty 12 months ago - 1 comment

#369 - empty `lists` retrieved from cache as `SpatVectors`

Issue - State: open - Opened by CeresBarros 12 months ago - 7 comments

#368 - fails on file-backed terra objects if quick is specified

Pull Request - State: closed - Opened by eliotmcintire 12 months ago

#367 - fix for preexisting nested archive

Pull Request - State: closed - Opened by ianmseddy 12 months ago

#366 - partial match of 'filesExtr' to 'filesExtracted'

Issue - State: closed - Opened by achubaty 12 months ago - 1 comment

#365 - use ask = FALSE when trying to auto recover cache

Pull Request - State: closed - Opened by achubaty 12 months ago

#364 - improved handling of relative and absolute paths

Pull Request - State: closed - Opened by achubaty 12 months ago

#363 - isAbsolutePath() defined differently twice in helpers.R

Issue - State: closed - Opened by achubaty 12 months ago - 2 comments

#362 - makeRelative() symlink resolution

Issue - State: closed - Opened by achubaty almost 1 year ago - 3 comments

#361 - deal with "\nError in trying to recover cacheID: "

Pull Request - State: closed - Opened by eliotmcintire about 1 year ago

#360 - new cache helper isUpdated()

Pull Request - State: closed - Opened by achubaty about 1 year ago

#359 - caching/saving extremely slow -- problem capturing environments

Issue - State: open - Opened by achubaty about 1 year ago - 6 comments

#358 - if dwnld already exists, was missing nested paths

Pull Request - State: closed - Opened by eliotmcintire about 1 year ago

#356 - issue digesting `terra` object during `.inputObjects` call

Issue - State: closed - Opened by CeresBarros about 1 year ago - 11 comments

#355 - correct usage of crs in projectTo()??

Issue - State: open - Opened by achubaty about 1 year ago

#354 - return NULL instead of "" for Filenames

Pull Request - State: closed - Opened by eliotmcintire about 1 year ago - 1 comment

#353 - Issue 350 -- AssessDataType for factors

Pull Request - State: closed - Opened by eliotmcintire about 1 year ago

#352 - Issue 351 -- Use only character string when comparing getRVersion

Pull Request - State: closed - Opened by eliotmcintire about 1 year ago

#351 - Use character for `getRVersion() <= XXX`

Issue - State: closed - Opened by eliotmcintire about 1 year ago

#350 - assessDataType() gets incorrect data type for categorical raster

Issue - State: closed - Opened by achubaty about 1 year ago - 1 comment

#349 - enforce code style via GitHub actions?

Issue - State: open - Opened by achubaty about 1 year ago - 5 comments

#348 - revdep checks with GitHub Actions

Pull Request - State: closed - Opened by achubaty about 1 year ago - 8 comments

#347 - cleanup code using styler, lintr , and goodpractice pkgs

Pull Request - State: closed - Opened by achubaty about 1 year ago

#346 - change test to sample instead of round

Pull Request - State: closed - Opened by eliotmcintire about 1 year ago

#345 - silently failing to cache SpaDES events

Issue - State: closed - Opened by CeresBarros about 1 year ago - 5 comments

#344 - multiple CRAN check failures

Issue - State: closed - Opened by achubaty about 1 year ago - 3 comments

#342 - bugfix: missing args in .unwrap call

Pull Request - State: closed - Opened by CeresBarros about 1 year ago - 1 comment

#341 - `preProcess` fails when `reproducible.inputPaths` is set `targetFile = NULL`

Issue - State: closed - Opened by CeresBarros about 1 year ago - 2 comments

#340 - bugfix: missing args in .unwrap call

Pull Request - State: closed - Opened by CeresBarros about 1 year ago - 1 comment

#339 - Message still shows after `reproducible.cachePath` option is set

Issue - State: open - Opened by see24 about 1 year ago - 1 comment

#337 - minor

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#336 - Updates to deal with SpaDES.core changes

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#335 - Unzipping large raster corrupts file

Issue - State: open - Opened by CeresBarros over 1 year ago - 2 comments

#334 - rm data.table::setattr to deal with modified compiler constants

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#333 - Improvements on `postProcess`/`postProcessTo`-related documentation

Pull Request - State: closed - Opened by CeresBarros over 1 year ago

#332 - Maintain maskWithRTM

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago - 1 comment

#331 - `postProcess`/`postProcessTo` fail when `to` and `projectTo` are supplied

Issue - State: closed - Opened by CeresBarros over 1 year ago - 3 comments

#329 - Issue 326

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#328 - Allow reproducible to run without `sf`

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#327 - copy files from destinationPath to inputPaths

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#326 - prepInputs error cropping polygons using raster

Issue - State: closed - Opened by achubaty over 1 year ago - 2 comments

#325 - Issue 323

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#323 - `prepInputs` extracts all files despite `alsoExtract = NA`

Issue - State: closed - Opened by CeresBarros over 1 year ago - 4 comments

#322 - Recovery from Cache when function's objective is a file change

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#321 - 320 `prepInputs`/`preProcess` failing when using `reproducible.inputPaths`

Pull Request - State: closed - Opened by CeresBarros over 1 year ago - 1 comment

#319 - 318 `remapOldArgs` makes `projectTo` FALSE

Pull Request - State: closed - Opened by CeresBarros over 1 year ago

#318 - `remapOldArgs` makes `projectTo` FALSE

Issue - State: closed - Opened by CeresBarros over 1 year ago - 1 comment

#317 - 316 `Cache(writeOutputs, ...)` is not retrieving a the output raster obj

Pull Request - State: closed - Opened by CeresBarros over 1 year ago - 1 comment

#316 - `Cache(writeOutputs, ...)` is not retrieving a the output raster obj

Issue - State: closed - Opened by CeresBarros over 1 year ago - 3 comments

#314 - test failure using data.table from github master

Issue - State: closed - Opened by tdhock over 1 year ago - 4 comments

#313 - checksums test fails

Issue - State: closed - Opened by achubaty over 1 year ago

#312 - inaccessible google drive file used in tests

Issue - State: closed - Opened by achubaty over 1 year ago - 1 comment

#311 - use testthat test fixtures for test setup and teardown

Issue - State: closed - Opened by achubaty over 1 year ago - 1 comment

#310 - GHA w/ new env vars for rasterRead and useDBI options

Pull Request - State: closed - Opened by achubaty over 1 year ago - 2 comments

#308 - nested subfolders with identical names

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#307 - archives with nested folder structure and identical base filenames

Issue - State: closed - Opened by achubaty over 1 year ago - 1 comment

#306 - rm defunct functions

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#305 - rm google auth chunk in testInit bc covr can't handle it

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago

#304 - code coverage bumps

Pull Request - State: closed - Opened by eliotmcintire over 1 year ago